Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

7351012 .. 7353445

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATGGAGTCAATCGAGTCTACTGTCCCACCCGGTTTCCGCTTTCATCCGACCGATGAAGAGCTCGTCGGGTACTATCTTAGAAAGAAAGTTGCCTCCCAGAAGATCGATCTTGATGTCATCAGAGACATTGATCTCTACAGAATCGAACCATGGGATCTTCAAGAGAGATGTCGAATCGGATATGAAGAGCAGAACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACTGGGACAAGGACCAACAGAGCAACCATGGCTGGGTTTTGGAAAGCAACGGGTCGAGACAAATCAGTATACGATAAGGCAAAACTGATCGGGATGAGGAAAACCCTTGTCTTCTACAAAGGAAGGGCTCCAAATGGACAGAAGAGCGATTGGATCATGCACGAATACAGACTCGAATCTGACGAAAATGGACCTCCGCAGGAAGAAGGATGGGTCGTGTGCAGAGCATTCAAGAAGAGAACCAGTAGTCAAAACAAAAGCATCGAAGGGTGGGACTCAAGCTACTTCTATGAAGAACTTAACGGTCTCACTTCCGTCGCTGATCCAACCAATTATATGATCTCGAGGCAGCCCCAGAGCTTTTTAAGCCAGAATTTCATGTGCAAGCAAGAGACAGAAGCTGACAGTTTGAACTTCCTGCACTCTGATCCGTTTGTCCAGCTTCCTCAGCTTGAGAGCCCGTCTCTTCCCTTAATAAAGCGGCCGAGCTCAACGTCTCTTATATCGGAGAATAACATCGAAATAGAAGACCAGCAAAGTATTCGAGGGTGCAACGATGCCAAGAAGGTTACTGACTGGAGGGCTCTGGACAAGTTTGTGGCTTCACAGTTGAGTCAAGAGGAGAGATATGAAGGTGATGGAGAAGCAAGCTTTGGTGCAAATGATGAATCAGATATGGCATTGTTGTTGTTGCAGAGTAGTAGTGCTAGGGATGAAGATGATCAACTGGGAAACAAGTTAAATGGGTTCCTAAATTCGACTCCTGACTGTGATATTGGGATATGCATATTTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

346

Amino Acids

39.7

Weight (kDa)

4.95

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	20, 306
AciI	CCGC	3 cut(s)	40, 434, 718
AclWI	GGATC	4 cut(s)	165, 398, 554, 659
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	2 cut(s)	610, 991
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	74, 206
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	164, 469, 649, 1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	873, 905
AluBI	AGCT	8 cut(s)	64, 519, 597, 638, 679, 688, 726, 888
AluI	AGCT	8 cut(s)	64, 519, 597, 638, 679, 688, 726, 888
Alw21I	GWGCWC	2 cut(s)	66, 728
Alw26I	GTCTC	6 cut(s)	120, 288, 548, 623, 705, 738
AlwI	GGATC	4 cut(s)	165, 398, 554, 659
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	719
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	2 cut(s)	610, 991
AspS9I	GGNCC	2 cut(s)	249, 428
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	884
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	2 cut(s)	249, 428
BanII	GRGCYC	5 cut(s)	66, 367, 698, 728, 823
BbsI	GAAGAC	2 cut(s)	340, 771
Bbv12I	GWGCWC	2 cut(s)	66, 728
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	2 cut(s)	441, 869
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	6 cut(s)	120, 288, 548, 623, 705, 738
BfaI	CTAG	1 cut(s)	945
BfmI	CTRYAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	587, 719
BlsI	GCNGC	2 cut(s)	588, 720
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	249, 428
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	249, 428
BmiI	GGNNCC	2 cut(s)	366, 986
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	2 cut(s)	249, 974
BmsI	GCATC	2 cut(s)	507, 784
BmuI	ACTGGG	2 cut(s)	249, 974
BpiI	GAAGAC	2 cut(s)	340, 771
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	1 cut(s)	835
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	499, 710
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	152, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	4 cut(s)	244, 480, 818, 969
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	152, 264
BseGI	GGATG	4 cut(s)	46, 336, 452, 955
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	4 cut(s)	244, 480, 818, 969
BseRI	GAGGAG	1 cut(s)	872
BseX3I	CGGCCG	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	598
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	2 cut(s)	478, 641
Bsh1285I	CGRYCG	2 cut(s)	54, 722
BshFI	GGCC	1 cut(s)	721
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	2 cut(s)	54, 722
BsiHKAI	GWGCWC	2 cut(s)	66, 728
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	3 cut(s)	11, 256, 524
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	6 cut(s)	120, 288, 548, 623, 705, 738
BsmBI	CGTCTC	2 cut(s)	705, 738
BsmFI	GGGAC	3 cut(s)	11, 256, 524
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	721
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	5 cut(s)	66, 367, 698, 728, 823
Bsp19I	CCATGG	2 cut(s)	152, 264
BspACI	CCGC	3 cut(s)	40, 434, 718
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	1 cut(s)	697
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	366, 986
BspPI	GGATC	4 cut(s)	165, 398, 554, 659
BspQI	GCTCTTC	3 cut(s)	54, 183, 374
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	4 cut(s)	244, 480, 818, 969
BssECI	CCNNGG	2 cut(s)	152, 264
BssNAI	GTATAC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	152, 264
Bst1107I	GTATAC	1 cut(s)	307
Bst4CI	ACNGT	5 cut(s)	25, 542, 644, 846, 1007
Bst6I	CTCTTC	5 cut(s)	54, 183, 374, 467, 708
BstC8I	GCNNGC	2 cut(s)	623, 886
BstDEI	CTNAG	2 cut(s)	80, 684
BstDSI	CCRYGG	2 cut(s)	152, 264
BstF5I	GGATG	4 cut(s)	46, 336, 452, 955
BstMAI	GTCTC	6 cut(s)	120, 288, 548, 623, 705, 738
BstMCI	CGRYCG	2 cut(s)	54, 722
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 603, 685
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	2 cut(s)	340, 771
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	719
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	721
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	152, 264
BtsCI	GGATG	4 cut(s)	46, 336, 452, 955
Cac8I	GCNNGC	2 cut(s)	623, 886
CaiI	CAGNNNCTG	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	249, 428
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	73, 205
CviAII	CATG	4 cut(s)	153, 265, 394, 616
CviQI	GTAC	2 cut(s)	73, 205
DdeI	CTNAG	2 cut(s)	80, 684
EaeI	YGGCCR	1 cut(s)	719
EagI	CGGCCG	1 cut(s)	719
Eam1104I	CTCTTC	5 cut(s)	54, 183, 374, 467, 708
EarI	CTCTTC	5 cut(s)	54, 183, 374, 467, 708
Ecl136II	GAGCTC	2 cut(s)	64, 726
EclXI	CGGCCG	1 cut(s)	719
Eco130I	CCWWGG	2 cut(s)	152, 264
Eco24I	GRGCYC	5 cut(s)	66, 367, 698, 728, 823
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	249, 428
Eco52I	CGGCCG	1 cut(s)	719
Eco53kI	GAGCTC	2 cut(s)	64, 726
Eco57I	CTGAAG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	580
EcoICRI	GAGCTC	2 cut(s)	64, 726
EcoT14I	CCWWGG	2 cut(s)	152, 264
EcoT22I	ATGCAT	1 cut(s)	1025
EcoT38I	GRGCYC	5 cut(s)	66, 367, 698, 728, 823
ErhI	CCWWGG	2 cut(s)	152, 264
Esp3I	CGTCTC	2 cut(s)	705, 738
FaeI	CATG	4 cut(s)	156, 268, 397, 619
FaqI	GGGAC	3 cut(s)	11, 256, 524
FatI	CATG	4 cut(s)	152, 264, 393, 615
FbaI	TGATCA	1 cut(s)	958
FblI	GTMKAC	2 cut(s)	20, 306
Fnu4HI	GCNGC	2 cut(s)	587, 719
FokI	GGATG	4 cut(s)	33, 343, 459, 962
FriOI	GRGCYC	5 cut(s)	66, 367, 698, 728, 823
Fsp4HI	GCNGC	2 cut(s)	587, 719
FspBI	CTAG	1 cut(s)	945
GluI	GCNGC	2 cut(s)	587, 719
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	835
HaeIII	GGCC	1 cut(s)	721
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	4 cut(s)	156, 268, 397, 619
HindIII	AAGCTT	1 cut(s)	886
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	2 cut(s)	21, 307
Hpy188I	TCNGA	7 cut(s)	51, 125, 182, 418, 664, 745, 910
Hpy188III	TCNNGA	9 cut(s)	113, 164, 293, 328, 469, 580, 824, 854, 1001
Hpy8I	GTNNAC	2 cut(s)	21, 307
Hpy99I	CGWCG	2 cut(s)	71, 557
HpyAV	CCTTC	5 cut(s)	354, 437, 497, 796, 863
HpyCH4III	ACNGT	5 cut(s)	25, 542, 644, 846, 1007
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	8 cut(s)	397, 459, 621, 658, 789, 896, 931, 1023
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 603, 685
HpyF3I	CTNAG	2 cut(s)	80, 684
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	4 cut(s)	156, 268, 397, 619
Ksp22I	TGATCA	1 cut(s)	958
LguI	GCTCTTC	3 cut(s)	54, 183, 374
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	2 cut(s)	507, 784
MaeI	CTAG	1 cut(s)	945
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	1 cut(s)	805
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	5 cut(s)	66, 367, 698, 728, 823
MluCI	AATT	3 cut(s)	568, 610, 991
MlyI	GAGTC	6 cut(s)	17, 26, 402, 506, 859, 991
MmeI	TCCRAC	3 cut(s)	74, 260, 587
MnlI	CCTC	8 cut(s)	106, 327, 441, 576, 693, 776, 810, 850
Mph1103I	ATGCAT	1 cut(s)	1025
MseI	TTAA	4 cut(s)	537, 602, 710, 977
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	266, 603, 685
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	2 cut(s)	152, 264
NlaIII	CATG	4 cut(s)	156, 268, 397, 619
NlaIV	GGNNCC	2 cut(s)	366, 986
NmeAIII	GCCGAG	1 cut(s)	747
NsiI	ATGCAT	1 cut(s)	1025
PaeR7I	CTCGAG	1 cut(s)	580
PciSI	GCTCTTC	3 cut(s)	54, 183, 374
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	4 cut(s)	144, 177, 413, 905
PkrI	GCNGC	2 cut(s)	588, 720
PleI	GAGTC	6 cut(s)	16, 25, 402, 506, 858, 991
PpsI	GAGTC	6 cut(s)	16, 25, 402, 506, 858, 991
Psp124BI	GAGCTC	2 cut(s)	66, 728
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	366, 986
PspPI	GGNCC	2 cut(s)	249, 428
PsrI	GAACNNNNNNTAC	2 cut(s)	188, 220
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	74, 206
RsaNI	GTAC	2 cut(s)	73, 205
SacI	GAGCTC	2 cut(s)	66, 728
SapI	GCTCTTC	3 cut(s)	54, 183, 374
SaqAI	TTAA	4 cut(s)	537, 602, 710, 977
SatI	GCNGC	2 cut(s)	587, 719
Sau96I	GGNCC	2 cut(s)	249, 428
SchI	GAGTC	6 cut(s)	17, 26, 402, 506, 859, 991
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	5 cut(s)	66, 367, 698, 728, 823
SfaNI	GCATC	2 cut(s)	507, 784
SfcI	CTRYAG	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	580
SinI	GGWCC	2 cut(s)	249, 428
SlaI	CTCGAG	1 cut(s)	580
SmlI	CTYRAG	3 cut(s)	514, 580, 689
SmoI	CTYRAG	3 cut(s)	514, 580, 689
Sse9I	AATT	3 cut(s)	568, 610, 991
SsiI	CCGC	3 cut(s)	40, 434, 718
SspMI	CTAG	1 cut(s)	945
SstI	GAGCTC	2 cut(s)	66, 728
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	152, 264
TaaI	ACNGT	5 cut(s)	25, 542, 644, 846, 1007
TaiI	ACGT	1 cut(s)	734
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	568, 610, 991
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	4 cut(s)	144, 177, 413, 905
Tru1I	TTAA	4 cut(s)	537, 602, 710, 977
Tru9I	TTAA	4 cut(s)	537, 602, 710, 977
TseI	GCWGC	1 cut(s)	586
TspDTI	ATGAA	8 cut(s)	35, 72, 201, 543, 604, 882, 918, 966
TspGWI	ACGGA	2 cut(s)	541, 657
VpaK11BI	GGWCC	2 cut(s)	249, 428
XapI	RAATTY	2 cut(s)	610, 991
XhoI	CTCGAG	1 cut(s)	580
XmiI	GTMKAC	2 cut(s)	20, 306
XspI	CTAG	1 cut(s)	945
Zsp2I	ATGCAT	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.