Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004019.1

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

21445 .. 22016

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004019.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggagtcaatcgagtccactgttccgccaggttttcgatttcatccgactgatgaagaactcgttggttattaccttagaaagaaagttgcatcgcaaaagatcgatctcgatgtcatcagagacattgatctctaccgaatagaaccatgggatctgcaagatagatgccggatcgggtatgaggagcagaatgaatggtatttcttcagccacaaagataagaagtatccgacgggcacaaggaccaacagggctaccatggcggggttttggaaagcgacgggaagggataaatcggtgtacgataagtccaagctgataggaatgaggaaaactcttgttttctacaaagggagagctccgaatggacagaaaaccgactggatcatgcacgaataccgactcgaatccgacgaaaatggaccaccacaggcaagtactactgaaaagcatcatctttctcctctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

157

Amino Acids

18.52

Weight (kDa)

8.54

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 266
AclWI	GGATC	3 cut(s)	162, 182, 395
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	305, 442
AfiI	CCNNNNNNNGG	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	2 cut(s)	319, 362
AluI	AGCT	2 cut(s)	319, 362
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	162, 182, 395
AspS9I	GGNCC	2 cut(s)	246, 425
AvaII	GGWCC	2 cut(s)	246, 425
BaeGI	GKGCMC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	240
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	246, 425
BmgT120I	GGNCC	2 cut(s)	246, 425
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	101, 158, 463
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	149, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	30
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	149, 261
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	2 cut(s)	200, 456
BseSI	GKGCMC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	242, 364
Bsp143I	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
Bsp19I	CCATGG	2 cut(s)	149, 261
BspACI	CCGC	2 cut(s)	26, 266
BspDI	ATCGAT	1 cut(s)	105
BspPI	GGATC	3 cut(s)	162, 182, 395
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	149, 261
BssMI	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
BssT1I	CCWWGG	2 cut(s)	149, 261
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	2 cut(s)	149, 261
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	6 cut(s)	105, 109, 133, 157, 177, 390
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	149, 261
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	246, 425
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	304, 441
CviAII	CATG	3 cut(s)	150, 262, 391
CviJI	RGCY	4 cut(s)	213, 257, 319, 362
CviKI_1	RGCY	4 cut(s)	213, 257, 319, 362
CviQI	GTAC	2 cut(s)	304, 441
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	104, 108, 132, 156, 176, 389
DpnII	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
EciI	GGCGGA	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	149, 261
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	246, 425
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	149, 261
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	2 cut(s)	149, 261
FaeI	CATG	3 cut(s)	153, 265, 394
FaiI	YATR	4 cut(s)	151, 183, 263, 392
FatI	CATG	3 cut(s)	149, 261, 390
FauI	CCCGC	1 cut(s)	259
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	364
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	3 cut(s)	153, 265, 394
HinfI	GANTC	4 cut(s)	5, 14, 405, 410
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	18, 304
Hpy188I	TCNGA	5 cut(s)	48, 122, 234, 366, 415
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	18, 304
Hpy99I	CGWCG	3 cut(s)	238, 286, 419
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	92, 160, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	153, 265, 394
Kzo9I	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
LmnI	GCTCC	2 cut(s)	187, 367
LpnPI	CCDG	6 cut(s)	15, 42, 185, 238, 370, 419
LweI	GCATC	3 cut(s)	101, 158, 463
MalI	GATC	6 cut(s)	104, 108, 132, 156, 176, 389
MboI	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
MboII	GAAGA	2 cut(s)	68, 199
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	242, 364
MlyI	GAGTC	3 cut(s)	14, 23, 399
MmeI	TCCRAC	3 cut(s)	71, 257, 438
MnlI	CCTC	2 cut(s)	178, 324
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	2 cut(s)	149, 261
NdeII	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
NlaIII	CATG	3 cut(s)	153, 265, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	410
PleI	GAGTC	3 cut(s)	13, 22, 399
PpsI	GAGTC	3 cut(s)	13, 22, 399
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	246, 425
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	305, 442
RsaNI	GTAC	2 cut(s)	304, 441
SacI	GAGCTC	1 cut(s)	364
Sau3AI	GATC	6 cut(s)	102, 106, 130, 154, 174, 387
Sau96I	GGNCC	2 cut(s)	246, 425
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	3 cut(s)	14, 23, 399
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	242, 364
SetI	ASST	4 cut(s)	34, 78, 321, 364
SfaNI	GCATC	3 cut(s)	101, 158, 463
SinI	GGWCC	2 cut(s)	246, 425
SsiI	CCGC	2 cut(s)	26, 266
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	149, 261
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	5 cut(s)	12, 37, 105, 111, 408
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	1 cut(s)	410
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	32, 69, 210
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	246, 425
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.