Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Forward (+)

17014002 .. 17018578

Gene Structure 4577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G166300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATGGAGTCAATCGAGTCCACTGTCCCACCAGGTTTCCGATTTCATCCAACTGATGAAGAGCTCGTCGGCTACTATCTCAGGAAGAAAGTTGCCTCCCAGAAGATCGATCTTGATGTCATCAGAGACATTGATCTCTACAGAATCGAACCATGGGACCTTCAAGAGAGATGCCGGATCGGGTATGAAGAGCAGAACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACTGGGACAAGGACCAACAGAGCCACCATGGCTGGGTTTTGGAAAGCAACGGGTCGAGACAAATCAGTGTACGACAAGACAAAACTGATTGGGATGAGGAAAACCCTTGTTTTCTACAAAGGAAGGGCTCCAAATGGACAGAAGACCGATTGGATTATGCACGAATACAGACTTGAATCCGAGGAGAATGGACCTCCACAGGAAGAAGGATGGGTGGTATGCAGAGCATTCAAGAAGAGAACCAGTAGCCAAAACAAAGGCATTGAAGGGTGGGACTCAAGCTACTTCTACGAAGAACTCAACGGTGTCAGTTCTGTCGTTGATCCAACCGAATATATGATCTCGAGGCAGCCTCCAAGCTTTTTAGCCCAGAATTTCATGTGCAAGCAAGAGACAGAAGCTGACAGTTTGAACTTCATGCACTCTGATCATTTTGTGCAGCTGCCTCAGCTAGAGAGCCCATCTCTGCCATTGATATCAAAGAGGCCGAGCTCAATGTCTCTGATATCGGAGAACAATATTGAAGTGGAAGACGAGCCCAAGAAGGTGACTGACTGGAGGGCCTTGGACAAGTTTGTGGCATCTCAGTTGAGTCAAGAAGAGAGGTATGAAGGTGATGGAGAGTCAAGCTTTGGGGCGCATGATGATTCAGAGATGGCATTGTTGTTATTGCAGAGTAGTGGTAGGGATGATGACCAGGGGAACAAGTTGAATGGGTTCCTAAATTCCAGTCCTGATGGTGATATTGGGATATGCATATTTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

336

Amino Acids

38.65

Weight (kDa)

5.0

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	185, 554
AcsI	RAATTY	2 cut(s)	610, 961
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	206, 308
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	8 cut(s)	164, 413, 469, 503, 649, 761, 949, 1001
AjnI	CCWGG	2 cut(s)	31, 933
AluBI	AGCT	8 cut(s)	64, 519, 597, 638, 679, 688, 729, 867
AluI	AGCT	8 cut(s)	64, 519, 597, 638, 679, 688, 729, 867
Alw21I	GWGCWC	2 cut(s)	66, 731
Alw26I	GTCTC	4 cut(s)	120, 288, 623, 741
AlwI	GGATC	2 cut(s)	185, 554
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	2 cut(s)	722, 798
ApeKI	GCWGC	3 cut(s)	586, 676, 679
ApoI	RAATTY	2 cut(s)	610, 961
Asp700I	GAANNNNTTC	1 cut(s)	953
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	4 cut(s)	157, 249, 428, 798
AsuHPI	GGTGA	3 cut(s)	796, 863, 989
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	3 cut(s)	157, 249, 428
BanII	GRGCYC	5 cut(s)	66, 367, 698, 731, 777
BbsI	GAAGAC	2 cut(s)	386, 774
Bbv12I	GWGCWC	2 cut(s)	66, 731
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	3 cut(s)	598, 666, 688
BccI	CCATC	5 cut(s)	441, 706, 848, 886, 968
BciT130I	CCWGG	2 cut(s)	33, 935
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	4 cut(s)	120, 288, 623, 741
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	587, 677, 680
BlsI	GCNGC	3 cut(s)	588, 678, 681
Bme1390I	CCNGG	2 cut(s)	33, 935
Bme18I	GGWCC	3 cut(s)	157, 249, 428
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	4 cut(s)	157, 249, 428, 798
BmiI	GGNNCC	3 cut(s)	158, 366, 956
BmrFI	CCNGG	2 cut(s)	33, 935
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	2 cut(s)	161, 827
BmuI	ACTGGG	1 cut(s)	249
BpiI	GAAGAC	2 cut(s)	386, 774
BplI	GAGNNNNNCTC	4 cut(s)	574, 606, 685, 717
BpmI	CTGGAG	1 cut(s)	814
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	499
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	5 cut(s)	152, 264, 417, 801, 934
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	4 cut(s)	244, 480, 797, 966
BseBI	CCWGG	2 cut(s)	33, 935
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	5 cut(s)	152, 264, 417, 801, 934
BseGI	GGATG	4 cut(s)	46, 336, 452, 931
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	94, 698, 836
BseNI	ACTGG	4 cut(s)	244, 480, 797, 966
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	598, 666, 688
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	724, 800
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	66, 731
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	4 cut(s)	11, 170, 256, 524
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	4 cut(s)	120, 288, 623, 741
BsmFI	GGGAC	4 cut(s)	11, 170, 256, 524
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	724, 800
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	5 cut(s)	66, 367, 698, 731, 777
Bsp143I	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
Bsp19I	CCATGG	2 cut(s)	152, 264
BspANI	GGCC	2 cut(s)	724, 800
BspCNI	CTCAG	3 cut(s)	93, 697, 835
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	158, 366, 956
BspPI	GGATC	2 cut(s)	185, 554
BspQI	GCTCTTC	2 cut(s)	54, 183
BsrI	ACTGG	4 cut(s)	244, 480, 797, 966
BssECI	CCNNGG	5 cut(s)	152, 264, 417, 801, 934
BssMI	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
BssT1I	CCWWGG	3 cut(s)	152, 264, 801
Bst2UI	CCWGG	2 cut(s)	33, 935
Bst4CI	ACNGT	3 cut(s)	25, 542, 644
Bst6I	CTCTTC	4 cut(s)	54, 183, 467, 831
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	3 cut(s)	80, 684, 822
BstDSI	CCRYGG	2 cut(s)	152, 264
BstF5I	GGATG	4 cut(s)	46, 336, 452, 931
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	7 cut(s)	108, 112, 136, 180, 562, 579, 667
BstMAI	GTCTC	4 cut(s)	120, 288, 623, 741
BstMBI	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 685
BstNI	CCWGG	2 cut(s)	33, 935
BstSCI	CCNGG	2 cut(s)	31, 933
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	598, 666, 688
BstV2I	GAAGAC	2 cut(s)	386, 774
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	724, 800
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	152, 264
BtsCI	GGATG	4 cut(s)	46, 336, 452, 931
BtsIMutI	CAGTG	2 cut(s)	21, 309
Cac8I	GCNNGC	1 cut(s)	623
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	4 cut(s)	157, 249, 428, 798
ClaI	ATCGAT	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	205, 307
CviAII	CATG	5 cut(s)	153, 265, 616, 655, 878
CviQI	GTAC	2 cut(s)	205, 307
DdeI	CTNAG	3 cut(s)	80, 684, 822
DpnI	GATC	7 cut(s)	107, 111, 135, 179, 561, 578, 666
DpnII	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
Eam1104I	CTCTTC	4 cut(s)	54, 183, 467, 831
EarI	CTCTTC	4 cut(s)	54, 183, 467, 831
Ecl136II	GAGCTC	2 cut(s)	64, 729
Eco130I	CCWWGG	3 cut(s)	152, 264, 801
Eco24I	GRGCYC	5 cut(s)	66, 367, 698, 731, 777
Eco32I	GATATC	2 cut(s)	714, 744
Eco47I	GGWCC	3 cut(s)	157, 249, 428
Eco53kI	GAGCTC	2 cut(s)	64, 729
Eco57I	CTGAAG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	580
EcoICRI	GAGCTC	2 cut(s)	64, 729
EcoO109I	RGGNCCY	2 cut(s)	157, 798
EcoRII	CCWGG	2 cut(s)	31, 933
EcoRV	GATATC	2 cut(s)	714, 744
EcoT14I	CCWWGG	3 cut(s)	152, 264, 801
EcoT22I	ATGCAT	1 cut(s)	995
EcoT38I	GRGCYC	5 cut(s)	66, 367, 698, 731, 777
ErhI	CCWWGG	3 cut(s)	152, 264, 801
FaeI	CATG	5 cut(s)	156, 268, 619, 658, 881
FaqI	GGGAC	4 cut(s)	11, 170, 256, 524
FatI	CATG	5 cut(s)	152, 264, 615, 654, 877
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	3 cut(s)	587, 677, 680
FokI	GGATG	4 cut(s)	33, 343, 459, 938
FriOI	GRGCYC	5 cut(s)	66, 367, 698, 731, 777
Fsp4HI	GCNGC	3 cut(s)	587, 677, 680
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	3 cut(s)	587, 677, 680
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	814
HaeIII	GGCC	2 cut(s)	724, 800
HapII	CCGG	1 cut(s)	175
HhaI	GCGC	1 cut(s)	877
Hin1II	CATG	5 cut(s)	156, 268, 619, 658, 881
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HindIII	AAGCTT	2 cut(s)	595, 865
HinfI	GANTC	8 cut(s)	8, 17, 144, 413, 512, 829, 860, 884
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	3 cut(s)	796, 863, 989
Hpy166II	GTNNAC	2 cut(s)	21, 307
Hpy188I	TCNGA	8 cut(s)	41, 125, 237, 418, 664, 741, 748, 889
Hpy188III	TCNNGA	8 cut(s)	82, 113, 164, 293, 469, 580, 833, 971
Hpy8I	GTNNAC	2 cut(s)	21, 307
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	6 cut(s)	170, 354, 437, 497, 775, 842
HpyCH4III	ACNGT	3 cut(s)	25, 542, 644
HpyCH4V	TGCA	7 cut(s)	397, 459, 621, 658, 676, 910, 993
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 685
HpyF3I	CTNAG	3 cut(s)	80, 684, 822
Hsp92II	CATG	5 cut(s)	156, 268, 619, 658, 881
HspAI	GCGC	1 cut(s)	875
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
LguI	GCTCTTC	2 cut(s)	54, 183
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	598, 666, 688
LweI	GCATC	2 cut(s)	161, 827
MabI	ACCWGGT	1 cut(s)	31
MaeI	CTAG	1 cut(s)	689
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	7 cut(s)	107, 111, 135, 179, 561, 578, 666
MboI	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
MhlI	GDGCHC	5 cut(s)	66, 367, 698, 731, 777
MluCI	AATT	2 cut(s)	610, 961
MlyI	GAGTC	5 cut(s)	17, 26, 506, 838, 869
MmeI	TCCRAC	3 cut(s)	74, 260, 587
Mph1103I	ATGCAT	1 cut(s)	995
MroXI	GAANNNNTTC	1 cut(s)	953
MspA1I	CMGCKG	1 cut(s)	679
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	33, 935
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	2 cut(s)	33, 935
MwoI	GCNNNNNNNGC	2 cut(s)	266, 685
NcoI	CCATGG	2 cut(s)	152, 264
NdeII	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
NlaIII	CATG	5 cut(s)	156, 268, 619, 658, 881
NlaIV	GGNNCC	3 cut(s)	158, 366, 956
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	1 cut(s)	784
NsiI	ATGCAT	1 cut(s)	995
PaeR7I	CTCGAG	1 cut(s)	580
PciSI	GCTCTTC	2 cut(s)	54, 183
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	3 cut(s)	144, 413, 884
PkrI	GCNGC	3 cut(s)	588, 678, 681
PleI	GAGTC	5 cut(s)	16, 25, 506, 837, 868
PpsI	GAGTC	5 cut(s)	16, 25, 506, 837, 868
PpuMI	RGGWCCY	1 cut(s)	157
Psp124BI	GAGCTC	2 cut(s)	66, 731
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	31, 933
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	31, 933
PspN4I	GGNNCC	3 cut(s)	158, 366, 956
PspPI	GGNCC	4 cut(s)	157, 249, 428, 798
PspPPI	RGGWCCY	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	188, 220
PstNI	CAGNNNCTG	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	679
RsaI	GTAC	2 cut(s)	206, 308
RsaNI	GTAC	2 cut(s)	205, 307
SacI	GAGCTC	2 cut(s)	66, 731
SapI	GCTCTTC	2 cut(s)	54, 183
SatI	GCNGC	3 cut(s)	587, 677, 680
Sau3AI	GATC	7 cut(s)	105, 109, 133, 177, 559, 576, 664
Sau96I	GGNCC	4 cut(s)	157, 249, 428, 798
SchI	GAGTC	5 cut(s)	17, 26, 506, 838, 869
ScrFI	CCNGG	2 cut(s)	33, 935
SduI	GDGCHC	5 cut(s)	66, 367, 698, 731, 777
SexAI	ACCWGGT	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	161, 827
SfcI	CTRYAG	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	580
SinI	GGWCC	3 cut(s)	157, 249, 428
SlaI	CTCGAG	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	514, 580
SmoI	CTYRAG	2 cut(s)	514, 580
Sse9I	AATT	2 cut(s)	610, 961
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	2 cut(s)	66, 731
StyD4I	CCNGG	2 cut(s)	31, 933
StyI	CCWWGG	3 cut(s)	152, 264, 801
TaaI	ACNGT	3 cut(s)	25, 542, 644
TaqI	TCGA	5 cut(s)	15, 108, 147, 292, 581
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	610, 961
TfiI	GAWTC	3 cut(s)	144, 413, 884
TscAI	CASTG	2 cut(s)	28, 309
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	3 cut(s)	586, 676, 679
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	6 cut(s)	35, 72, 201, 604, 643, 861
TspRI	CASTG	2 cut(s)	28, 309
VpaK11BI	GGWCC	3 cut(s)	157, 249, 428
XapI	RAATTY	2 cut(s)	610, 961
XhoI	CTCGAG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.