Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

17110645 .. 17114141

Gene Structure 3497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAATCGGTGGATCAATCATGTAGTGTTCCTCCGGGATTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCATCGCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGGGATTTACAAGAGAGCTGCCGAATCGGATATGAGGAAAGAAATGAATGGTATTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTTTGGAAAGCCACGGGCCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGAAAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTTTGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACAGAAACTTGGAGCTCAAGTTACTTTTACGACGAATTACCGAGTGGAGTACGCTCAGTTACGGAGCCTCTTAACTACGTATCTAAGCAGAAACAAAACGTTTTTGCACAAGATTTAATGTTCAAGCAAGAACTAGAAGGATCAGATATCGGTTTAAACTTCATCCACTGCGATCAATTCATTCAACTTCCGCAGCTTGAAAGCCCTTCACTCCCTCTTACCAAAAGACCAGTGAGCTTGACGTCAATTACATCATTGGAGAAGAATAAAAATATCTACAAAAGACATTTAATAGAAGAGGATGTGAGCTTCAATGCGCTAATAAGTAGTGGAAATAAAGATAAGAAGAAGAAGAAAACATCAGTGATGACGACGGATTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTTTCGGGTTTTGGAGGTCATCATGAAGAAGATAACAATAAAATCGGTCATTACAATAACGAAGAGAGCAATAACAAGGGATCAGTAGAGACTGCTTCTTCCACGTTATTGAGTGATAGAGAAGAAGAGAACAGATTCATCAGTGGATTATTGTGTTCCAACTTGGACTATGACTTATATAGGGATTTACATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042060 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:1990110 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

377

Amino Acids

43.52

Weight (kDa)

6.19

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 138	1e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	749
AciI	CCGC	1 cut(s)	695
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	4 cut(s)	21, 401, 652, 1024
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	899
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	746
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	3 cut(s)	273, 301, 488
AflIII	ACRYGT	1 cut(s)	1126
AgsI	TTSAA	5 cut(s)	472, 628, 689, 704, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	6 cut(s)	67, 174, 519, 700, 741, 813
AluI	AGCT	6 cut(s)	67, 174, 519, 700, 741, 813
Alw21I	GWGCWC	3 cut(s)	69, 521, 892
Alw26I	GTCTC	2 cut(s)	291, 1019
AlwI	GGATC	4 cut(s)	21, 401, 652, 1024
AoxI	GGCC	2 cut(s)	292, 376
ApeKI	GCWGC	2 cut(s)	174, 697
ApoI	RAATTY	1 cut(s)	899
Asp700I	GAANNNNTTC	1 cut(s)	1070
AspLEI	GCGC	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	36, 490
AxyI	CCTNAGG	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	378
BanII	GRGCYC	3 cut(s)	69, 370, 521
Bbv12I	GWGCWC	3 cut(s)	69, 521, 892
BbvI	GCAGC	2 cut(s)	161, 709
BccI	CCATC	2 cut(s)	57, 926
BcnI	CCSGG	2 cut(s)	36, 490
BcoDI	GTCTC	2 cut(s)	291, 1019
BfaI	CTAG	2 cut(s)	413, 638
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	2 cut(s)	175, 698
BlsI	GCNGC	2 cut(s)	176, 699
Bme1390I	CCNGG	2 cut(s)	36, 490
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	36, 490
BmsI	GCATC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	2 cut(s)	36, 490
Bsa29I	ATCGAT	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	583
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	155, 267, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 301, 488
Bse118I	RCCGGY	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	734
Bse21I	CCTNAGG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	135
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	155, 267, 288
BseGI	GGATG	3 cut(s)	49, 666, 811
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	273, 301, 488
BseMII	CTCAG	2 cut(s)	452, 573
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	161, 709
BseYI	CCCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	294, 378
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	3 cut(s)	69, 521, 892
BsiSI	CCGG	3 cut(s)	35, 409, 489
BslI	CCNNNNNNNGG	3 cut(s)	273, 301, 488
BsmAI	GTCTC	2 cut(s)	291, 1019
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	294, 378
Bsp1286I	GDGCHC	4 cut(s)	69, 370, 521, 892
Bsp143I	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
Bsp19I	CCATGG	2 cut(s)	155, 267
BspACI	CCGC	1 cut(s)	695
BspANI	GGCC	2 cut(s)	294, 378
BspCNI	CTCAG	2 cut(s)	451, 572
BspDI	ATCGAT	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	1 cut(s)	570
BspPI	GGATC	4 cut(s)	21, 401, 652, 1024
BspQI	GCTCTTC	2 cut(s)	57, 358
BsrFI	RCCGGY	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	734
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	155, 267, 288
BssMI	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
BssNI	GRCGYC	1 cut(s)	746
BssT1I	CCWWGG	2 cut(s)	155, 267
Bst6I	CTCTTC	5 cut(s)	57, 358, 795, 993, 1056
BstACI	GRCGYC	1 cut(s)	746
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	3 cut(s)	438, 559, 588
BstDSI	CCRYGG	3 cut(s)	155, 267, 288
BstF5I	GGATG	3 cut(s)	49, 666, 811
BstHHI	GCGC	1 cut(s)	823
BstKTI	GATC	8 cut(s)	16, 111, 115, 139, 396, 647, 679, 1019
BstMAI	GTCTC	2 cut(s)	291, 1019
BstMBI	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	1130
BstSCI	CCNGG	2 cut(s)	34, 488
BstSFI	CTRYAG	1 cut(s)	142
BstSNI	TACGTA	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	161, 709
BstXI	CCANNNNNNTGG	1 cut(s)	932
Bsu15I	ATCGAT	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	294, 378
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	3 cut(s)	155, 267, 288
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	49, 666, 811
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	4 cut(s)	670, 741, 873, 1084
Cac8I	GCNNGC	1 cut(s)	495
CciI	TCATGA	1 cut(s)	958
CfoI	GCGC	1 cut(s)	823
Cfr10I	RCCGGY	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	7 cut(s)	21, 156, 268, 397, 401, 959, 1127
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	3 cut(s)	438, 559, 588
DpnI	GATC	8 cut(s)	15, 110, 114, 138, 395, 646, 678, 1018
DpnII	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
DraI	TTTAAA	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	5 cut(s)	57, 358, 795, 993, 1056
EarI	CTCTTC	5 cut(s)	57, 358, 795, 993, 1056
Ecl136II	GAGCTC	2 cut(s)	67, 519
Eco105I	TACGTA	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	155, 267
Eco24I	GRGCYC	3 cut(s)	69, 370, 521
Eco32I	GATATC	1 cut(s)	652
Eco53kI	GAGCTC	2 cut(s)	67, 519
Eco57I	CTGAAG	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	438
EcoICRI	GAGCTC	2 cut(s)	67, 519
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	155, 267
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	3 cut(s)	69, 370, 521
ErhI	CCWWGG	2 cut(s)	155, 267
FaeI	CATG	7 cut(s)	24, 159, 271, 400, 404, 962, 1130
FatI	CATG	7 cut(s)	20, 155, 267, 396, 400, 958, 1126
Fnu4HI	GCNGC	2 cut(s)	175, 698
FokI	GGATG	3 cut(s)	36, 653, 818
FriOI	GRGCYC	3 cut(s)	69, 370, 521
Fsp4HI	GCNGC	2 cut(s)	175, 698
FspBI	CTAG	2 cut(s)	413, 638
GlaI	GCGC	1 cut(s)	822
GluI	GCNGC	2 cut(s)	175, 698
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	294, 378
HapII	CCGG	3 cut(s)	35, 409, 489
HhaI	GCGC	1 cut(s)	823
Hin1I	GRCGYC	1 cut(s)	746
Hin1II	CATG	7 cut(s)	24, 159, 271, 400, 404, 962, 1130
Hin6I	GCGC	1 cut(s)	821
HinP1I	GCGC	1 cut(s)	821
HinfI	GANTC	7 cut(s)	5, 39, 45, 147, 180, 416, 1071
HpaII	CCGG	3 cut(s)	35, 409, 489
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	44, 185, 421, 649
Hpy188III	TCNNGA	4 cut(s)	116, 440, 472, 959
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	2 cut(s)	539, 880
HpyAV	CCTTC	3 cut(s)	440, 635, 720
HpyCH4IV	ACGT	4 cut(s)	582, 603, 746, 1040
HpyCH4V	TGCA	4 cut(s)	98, 400, 431, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	438, 559, 588
HpySE526I	ACGT	4 cut(s)	582, 603, 746, 1040
Hsp92I	GRCGYC	1 cut(s)	746
Hsp92II	CATG	7 cut(s)	24, 159, 271, 400, 404, 962, 1130
HspAI	GCGC	1 cut(s)	821
Kzo9I	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
LguI	GCTCTTC	2 cut(s)	57, 358
LmnI	GCTCC	2 cut(s)	516, 568
LpnPI	CCDG	7 cut(s)	48, 228, 258, 422, 425, 502, 747
Lsp1109I	GCAGC	2 cut(s)	161, 709
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	2 cut(s)	413, 638
MaeII	ACGT	4 cut(s)	582, 603, 746, 1040
MaeIII	GTNAC	3 cut(s)	74, 524, 562
MalI	GATC	8 cut(s)	15, 110, 114, 138, 395, 646, 678, 1018
MboI	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
MhlI	GDGCHC	4 cut(s)	69, 370, 521, 892
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	4 cut(s)	539, 680, 750, 899
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	3 cut(s)	77, 263, 1119
MnlI	CCTC	8 cut(s)	42, 184, 444, 447, 582, 729, 796, 944
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	1070
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	5 cut(s)	83, 576, 620, 659, 794
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	3 cut(s)	35, 409, 489
MspR9I	CCNGG	2 cut(s)	36, 490
MssI	GTTTAAAC	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	36, 490
NcoI	CCATGG	2 cut(s)	155, 267
NdeII	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
NlaIII	CATG	7 cut(s)	24, 159, 271, 400, 404, 962, 1130
NlaIV	GGNNCC	1 cut(s)	570
NmeAIII	GCCGAG	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	1130
PagI	TCATGA	1 cut(s)	958
PciI	ACATGT	1 cut(s)	1126
PciSI	GCTCTTC	2 cut(s)	57, 358
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	1070
PfeI	GAWTC	6 cut(s)	5, 39, 45, 147, 180, 1071
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	176, 699
PleI	GAGTC	1 cut(s)	424
PmeI	GTTTAAAC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	583
PscI	ACATGT	1 cut(s)	1126
Psp124BI	GAGCTC	2 cut(s)	69, 521
Psp1406I	AACGTT	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SacI	GAGCTC	2 cut(s)	69, 521
SapI	GCTCTTC	2 cut(s)	57, 358
SaqAI	TTAA	5 cut(s)	83, 576, 620, 659, 794
SatI	GCNGC	2 cut(s)	175, 698
Sau3AI	GATC	8 cut(s)	13, 108, 112, 136, 393, 644, 676, 1016
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	2 cut(s)	36, 490
SduI	GDGCHC	4 cut(s)	69, 370, 521, 892
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SnaBI	TACGTA	1 cut(s)	583
Sse9I	AATT	4 cut(s)	539, 680, 750, 899
SsiI	CCGC	1 cut(s)	695
SspMI	CTAG	2 cut(s)	413, 638
SstI	GAGCTC	2 cut(s)	69, 521
StyD4I	CCNGG	2 cut(s)	34, 488
StyI	CCWWGG	2 cut(s)	155, 267
TaiI	ACGT	4 cut(s)	585, 606, 749, 1043
TaqI	TCGA	3 cut(s)	111, 150, 894
TaqII	GACCGA	1 cut(s)	971
TasI	AATT	4 cut(s)	539, 680, 750, 899
TfiI	GAWTC	6 cut(s)	5, 39, 45, 147, 180, 1071
Tru1I	TTAA	5 cut(s)	83, 576, 620, 659, 794
Tru9I	TTAA	5 cut(s)	83, 576, 620, 659, 794
TscAI	CASTG	4 cut(s)	677, 741, 873, 1084
TseI	GCWGC	2 cut(s)	174, 697
TspDTI	ATGAA	7 cut(s)	75, 216, 417, 655, 673, 975, 1063
TspGWI	ACGGA	2 cut(s)	581, 893
TspRI	CASTG	4 cut(s)	677, 741, 873, 1084
XapI	RAATTY	1 cut(s)	899
XceI	RCATGY	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	1070
XspI	CTAG	2 cut(s)	413, 638
ZraI	GACGTC	1 cut(s)	747
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.