FvH4_1g12050
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005584
Physical Location & Seq
Reverse (-)
6581856 .. 6586425
4570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12050.t1

Sequence Viewer

Length: 1092 bp
ATGGAGTCAATCGAGTCCACTGTTCCGCCAGGTTTTCGCTTTCATCCGACTGATGAAGAACTCGTTGGTTATTACCTTAGAAAGAAAGTTGCCTCGCAAAAGATCGATCTCGATGTCATCAGAGACATTGATCTCTACCGAATCGAACCATGGGATCTGCAAGATAGGTGCCGGATCGGGTATGAGGAGCAGAACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACGGGGACAAGGACCAACAGGGCTACCATGGCCGGGTTTTGGAAGGCGACGGGCCGGGACAAATCGGTTTACGATAAGTCCAAGCTGATCGGAATGAGGAAAACTCTTGTTTTCTACAAAGGGAGGGCTCCAAACGGCCAGAAAACTGACTGGATCATGCACGAATACCGACTTGAATCCGACGAAAATGGACCACCACAGGAAGAAGGATGGGTGGTATGCCGAGCATTCAAGAAAAGAACCAGTACCCAAAACAAAAGCATGGAAGGCTGGGACTCGAGCTATTTCTATGACGAACTTCATGGTGTCAGCTCCATCGTGGATCCAACCGATTTCATCTCGAGGCAGCCTCAAAGGGCGGCGCAAAGCTTCTTAGCTGCCCAGAGTTTCTTGTGTAAGCAGGAGATCACAGCTGAAGCTGACAATTTCAACAGCACTTTTATGCCTTCTGATCATTTTGTTCAACTCCCTCAGCTAGAGAGCCCATCTCTTCCCTTAATAAAGAAGCCGAGCTCATCAATGTCACTGATATCTTCGTCGGAGAATAATGTCGAAGAAGAGGTGGAGTGGATTAACAATAATAGAGGGTGCAGCAGTAACAGTAATAATGCCAAGAAAGCAGCTGCCGTGACTGACTGGAGGGACCTGGACAAGTTTGTAGCTTCTCAGTTGAGTCATGAAGATAAGTTTAATGAGTTAGGTGATCATGGAGAGTATTCAAGCTTTGGTGTTCATGATCACGATGATTCGGATATGGCGGCATTGTTGTTGTTGCAGAGGGATGACGGGAACAAGTTGAATGGGTTTTTAAGTTCCGGCTCGGATTGTGATCTCGGAATATGCATATTTGAAAAATGA

Protein Analysis

364

Amino Acids

41.54

Weight (kDa)

5.19

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 136 7.8e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AciI CCGC 3 cut(s) 26, 593, 992
AclWI GGATC 5 cut(s) 162, 182, 395, 551, 564
AcoI YGGCCR 2 cut(s) 264, 370
AcuI CTGAAG 2 cut(s) 193, 669
AfaI GTAC 2 cut(s) 203, 481
AfiI CCNNNNNNNGG 2 cut(s) 267, 273
AgsI TTSAA 7 cut(s) 410, 466, 664, 698, 954, 1033, 1085
AjnI CCWGG 2 cut(s) 28, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
Alw21I GWGCWC 1 cut(s) 749
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 5 cut(s) 162, 182, 395, 551, 564
Ama87I CYCGRG 2 cut(s) 511, 574
AoxI GGCC 3 cut(s) 264, 286, 370
ApeKI GCWGC 5 cut(s) 580, 611, 825, 854, 857
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 4 cut(s) 246, 286, 425, 877
AsuC2I CCSGG 2 cut(s) 268, 290
AsuHPI GGTGA 1 cut(s) 947
AvaI CYCGRG 2 cut(s) 511, 574
AvaII GGWCC 3 cut(s) 246, 425, 877
BamHI GGATCC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 3 cut(s) 364, 719, 749
Bbv12I GWGCWC 1 cut(s) 749
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 5 cut(s) 592, 598, 837, 844, 866
BccI CCATC 3 cut(s) 438, 557, 727
BceAI ACGGC 2 cut(s) 385, 845
BciT130I CCWGG 2 cut(s) 30, 881
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 685, 937, 970
BcnI CCSGG 2 cut(s) 268, 290
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 710
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 7 cut(s) 581, 594, 612, 826, 855, 858, 993
BlsI GCNGC 7 cut(s) 582, 595, 613, 827, 856, 859, 994
Bme1390I CCNGG 4 cut(s) 30, 268, 290, 881
Bme18I GGWCC 3 cut(s) 246, 425, 877
BmeT110I CYCGRG 2 cut(s) 511, 574
BmgT120I GGNCC 4 cut(s) 246, 286, 425, 877
BmiI GGNNCC 4 cut(s) 170, 363, 558, 878
BmrFI CCNGG 4 cut(s) 30, 268, 290, 881
BplI GAGNNNNNCTC 6 cut(s) 322, 354, 568, 600, 706, 738
BpmI CTGGAG 1 cut(s) 892
Bpu10I CCTNAGC 1 cut(s) 705
BpuMI CCSGG 2 cut(s) 268, 290
Bsa29I ATCGAT 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1062
BsaJI CCNNGG 2 cut(s) 149, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 273
Bse1I ACTGG 3 cut(s) 389, 477, 875
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 30, 881
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 149, 261
BseGI GGATG 3 cut(s) 43, 449, 1021
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 2 cut(s) 267, 273
BseMII CTCAG 2 cut(s) 719, 914
BseNI ACTGG 3 cut(s) 389, 477, 875
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 5 cut(s) 592, 598, 837, 844, 866
BseYI CCCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 844
BshFI GGCC 3 cut(s) 266, 288, 372
BshNI GGYRCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 749
BsiHKCI CYCGRG 2 cut(s) 511, 574
BsiSI CCGG 4 cut(s) 172, 267, 289, 1050
BslFI GGGAC 4 cut(s) 253, 305, 521, 890
BslI CCNNNNNNNGG 2 cut(s) 267, 273
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 4 cut(s) 253, 305, 521, 890
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 3 cut(s) 266, 288, 372
BsoBI CYCGRG 2 cut(s) 511, 574
Bsp1286I GDGCHC 3 cut(s) 364, 719, 749
Bsp19I CCATGG 2 cut(s) 149, 261
BspACI CCGC 3 cut(s) 26, 593, 992
BspANI GGCC 3 cut(s) 266, 288, 372
BspCNI CTCAG 2 cut(s) 718, 913
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 2 cut(s) 910, 967
BspLI GGNNCC 4 cut(s) 170, 363, 558, 878
BspPI GGATC 5 cut(s) 162, 182, 395, 551, 564
BspT107I GGYRCC 1 cut(s) 168
BsrI ACTGG 3 cut(s) 389, 477, 875
BssECI CCNNGG 2 cut(s) 149, 261
BssT1I CCWWGG 2 cut(s) 149, 261
Bst2UI CCWGG 2 cut(s) 30, 881
Bst4CI ACNGT 2 cut(s) 22, 836
Bst6I CTCTTC 2 cut(s) 729, 786
BstDEI CTNAG 4 cut(s) 77, 607, 705, 900
BstDSI CCRYGG 2 cut(s) 149, 261
BstF5I GGATG 3 cut(s) 43, 449, 1021
BstHHI GCGC 1 cut(s) 598
BstMAI GTCTC 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 263, 501, 851
BstNI CCWGG 2 cut(s) 30, 881
BstSCI CCNGG 4 cut(s) 28, 266, 288, 879
BstV1I GCAGC 5 cut(s) 592, 598, 837, 844, 866
BstX2I RGATCY 2 cut(s) 154, 556
BstYI RGATCY 2 cut(s) 154, 556
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 266, 288, 372
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 2 cut(s) 149, 261
BtsCI GGATG 3 cut(s) 43, 449, 1021
BtsIMutI CAGTG 2 cut(s) 18, 758
CciI TCATGA 2 cut(s) 910, 967
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 4 cut(s) 246, 286, 425, 877
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 202, 480
CviAII CATG 8 cut(s) 150, 262, 391, 496, 536, 911, 941, 968
CviQI GTAC 2 cut(s) 202, 480
DdeI CTNAG 4 cut(s) 77, 607, 705, 900
EaeI YGGCCR 2 cut(s) 264, 370
Eam1104I CTCTTC 2 cut(s) 729, 786
EarI CTCTTC 2 cut(s) 729, 786
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 747
Eco130I CCWWGG 2 cut(s) 149, 261
Eco24I GRGCYC 3 cut(s) 364, 719, 749
Eco32I GATATC 1 cut(s) 765
Eco47I GGWCC 3 cut(s) 246, 425, 877
Eco53kI GAGCTC 1 cut(s) 747
Eco57I CTGAAG 2 cut(s) 193, 669
Eco88I CYCGRG 2 cut(s) 511, 574
EcoICRI GAGCTC 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 877
EcoRII CCWGG 2 cut(s) 28, 879
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 149, 261
EcoT22I ATGCAT 1 cut(s) 1079
EcoT38I GRGCYC 3 cut(s) 364, 719, 749
ErhI CCWWGG 2 cut(s) 149, 261
FaeI CATG 8 cut(s) 153, 265, 394, 499, 539, 914, 944, 971
FaqI GGGAC 4 cut(s) 253, 305, 521, 890
FatI CATG 8 cut(s) 149, 261, 390, 495, 535, 910, 940, 967
FbaI TGATCA 3 cut(s) 685, 937, 970
Fnu4HI GCNGC 7 cut(s) 581, 594, 612, 826, 855, 858, 993
FokI GGATG 3 cut(s) 30, 456, 1028
FriOI GRGCYC 3 cut(s) 364, 719, 749
Fsp4HI GCNGC 7 cut(s) 581, 594, 612, 826, 855, 858, 993
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 597
GluI GCNGC 7 cut(s) 581, 594, 612, 826, 855, 858, 993
GsaI CCCAGC 1 cut(s) 508
GsuI CTGGAG 1 cut(s) 892
HaeIII GGCC 3 cut(s) 266, 288, 372
HapII CCGG 4 cut(s) 172, 267, 289, 1050
HhaI GCGC 1 cut(s) 598
Hin1II CATG 8 cut(s) 153, 265, 394, 499, 539, 914, 944, 971
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HindIII AAGCTT 2 cut(s) 601, 955
HinfI GANTC 7 cut(s) 5, 14, 141, 410, 509, 907, 980
HpaII CCGG 4 cut(s) 172, 267, 289, 1050
HphI GGTGA 1 cut(s) 947
Hpy166II GTNNAC 2 cut(s) 18, 304
Hpy188III TCNNGA 6 cut(s) 110, 466, 574, 911, 968, 974
Hpy8I GTNNAC 2 cut(s) 18, 304
Hpy99I CGWCG 4 cut(s) 238, 286, 419, 775
HpyAV CCTTC 4 cut(s) 271, 434, 494, 690
HpyCH4III ACNGT 2 cut(s) 22, 836
HpyCH4V TGCA 5 cut(s) 160, 394, 825, 1009, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 501, 851
HpyF3I CTNAG 4 cut(s) 77, 607, 705, 900
Hsp92II CATG 8 cut(s) 153, 265, 394, 499, 539, 914, 944, 971
HspAI GCGC 1 cut(s) 596
Ksp22I TGATCA 3 cut(s) 685, 937, 970
LmnI GCTCC 3 cut(s) 187, 367, 551
Lsp1109I GCAGC 5 cut(s) 592, 598, 837, 844, 866
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 3 cut(s) 756, 830, 862
MboII GAAGA 8 cut(s) 68, 199, 449, 716, 759, 800, 803, 926
MflI RGATCY 2 cut(s) 154, 556
MhlI GDGCHC 3 cut(s) 364, 719, 749
MluCI AATT 1 cut(s) 658
MlyI GAGTC 4 cut(s) 14, 23, 503, 916
MmeI TCCRAC 5 cut(s) 71, 257, 438, 584, 753
Mph1103I ATGCAT 1 cut(s) 1079
MseI TTAA 4 cut(s) 731, 807, 924, 1043
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 2 cut(s) 647, 857
MspI CCGG 4 cut(s) 172, 267, 289, 1050
MspR9I CCNGG 4 cut(s) 30, 268, 290, 881
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 30, 881
MwoI GCNNNNNNNGC 3 cut(s) 263, 501, 851
NciI CCSGG 2 cut(s) 268, 290
NcoI CCATGG 2 cut(s) 149, 261
NlaIII CATG 8 cut(s) 153, 265, 394, 499, 539, 914, 944, 971
NlaIV GGNNCC 4 cut(s) 170, 363, 558, 878
NmeAIII GCCGAG 2 cut(s) 482, 768
NmuCI GTSAC 2 cut(s) 756, 862
NsiI ATGCAT 1 cut(s) 1079
PaeR7I CTCGAG 2 cut(s) 511, 574
PagI TCATGA 2 cut(s) 910, 967
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 3 cut(s) 141, 410, 980
PkrI GCNGC 7 cut(s) 582, 595, 613, 827, 856, 859, 994
PleI GAGTC 4 cut(s) 13, 22, 503, 915
PpsI GAGTC 4 cut(s) 13, 22, 503, 915
PpuMI RGGWCCY 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 2 cut(s) 28, 879
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 2 cut(s) 28, 879
PspN4I GGNNCC 4 cut(s) 170, 363, 558, 878
PspPI GGNCC 4 cut(s) 246, 286, 425, 877
PspPPI RGGWCCY 1 cut(s) 877
PspXI VCTCGAGB 1 cut(s) 511
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PsuI RGATCY 2 cut(s) 154, 556
PvuII CAGCTG 2 cut(s) 647, 857
RsaI GTAC 2 cut(s) 203, 481
RsaNI GTAC 2 cut(s) 202, 480
RseI CAYNNNNRTG 1 cut(s) 674
SacI GAGCTC 1 cut(s) 749
SaqAI TTAA 4 cut(s) 731, 807, 924, 1043
SatI GCNGC 7 cut(s) 581, 594, 612, 826, 855, 858, 993
Sau96I GGNCC 4 cut(s) 246, 286, 425, 877
SchI GAGTC 4 cut(s) 14, 23, 503, 916
ScrFI CCNGG 4 cut(s) 30, 268, 290, 881
SduI GDGCHC 3 cut(s) 364, 719, 749
Sfr274I CTCGAG 2 cut(s) 511, 574
SinI GGWCC 3 cut(s) 246, 425, 877
SlaI CTCGAG 2 cut(s) 511, 574
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 2 cut(s) 511, 574
SmoI CTYRAG 2 cut(s) 511, 574
Sse9I AATT 1 cut(s) 658
SsiI CCGC 3 cut(s) 26, 593, 992
SspMI CTAG 1 cut(s) 710
SstI GAGCTC 1 cut(s) 749
StyD4I CCNGG 4 cut(s) 28, 266, 288, 879
StyI CCWWGG 2 cut(s) 149, 261
TaaI ACNGT 2 cut(s) 22, 836
TaqI TCGA 7 cut(s) 12, 105, 111, 144, 512, 575, 786
TasI AATT 1 cut(s) 658
TauI GCSGC 2 cut(s) 596, 995
TfiI GAWTC 3 cut(s) 141, 410, 980
Tru1I TTAA 4 cut(s) 731, 807, 924, 1043
Tru9I TTAA 4 cut(s) 731, 807, 924, 1043
TscAI CASTG 2 cut(s) 25, 765
TseFI GTSAC 2 cut(s) 756, 862
TseI GCWGC 5 cut(s) 580, 611, 825, 854, 857
Tsp45I GTSAC 2 cut(s) 756, 862
TspDTI ATGAA 6 cut(s) 32, 69, 524, 559, 927, 956
TspRI CASTG 2 cut(s) 25, 765
VpaK11BI GGWCC 3 cut(s) 246, 425, 877
XhoI CTCGAG 2 cut(s) 511, 574
XspI CTAG 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.