Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

26479766 .. 26481528

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATGAAGGTTGATCAAGATTATTCGTGTAGTATACCGCCTGGATTTAGGTTTCATCCGACAGATGAAGAACTTGTCGGATATTATCTCAAGAAGAAAATCGCCTCCCAGAGGATTGATCTCGACGTTATCAGAGAAATTGATCTTTACAAGATCGAACCATGGGATCTACAAGAGAGATGTAGGATAGGGTACGAGGAGCAAACGGAGTGGTATTTCTTCAGCCATAGAGACAAGAAGTATCCGACTGGGACTAGGACAAACCGAGCCACCGTGGCCGGTTTCTGGAAAGCAACGGGCCGGGACAAGGCGGTTTACCTCAACTCCAAACTTATCGGTATGAGAAAAACGCTTGTCTTTTACCGAGGTCGAGCGCCTAATGGCCAAAAGTCCGATTGGATCATTCACGAATACTACAGCCTCGAGTCACACCAGAACTCTCCTCCACAGGAAGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAACGAACGACCATCCCAACAAAAAGGAGGCAACTTTGGGATCCGAACTGCTTATTCTACGACGACGCCACTCTCTTGGAACCTCTCGACAAGCGAGCCAGACATAATCCTGATTTTACCGCCACACCGTTCAAGCAAGAACTACTCTCCGAGGCCAGTCACGTCCAGGATGGAGATTTCGGATCTATGTACCTTCAATGCATCGATGATGATCAATTCTCCCAGCTTCCTCAGCTCGAGAGCCCCTCTCTTCCGTCGGAAATAACTCCCCATAGTACTACTTTTTCTGAGAACAGTAGCCGGAAAGATGACATGAGCTCCGAGAAGAGGATCACTGACTGGAGATATCTAGATAAGTTCGTGGCGTCTCAATTTTTGATGAGTGGAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042060 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:1990110 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

292

Amino Acids

34.32

Weight (kDa)

6.03

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	13 - 138	1.1e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	3 cut(s)	38, 311, 603
AclWI	GGATC	6 cut(s)	174, 407, 518, 531, 673, 821
AcoI	YGGCCR	2 cut(s)	276, 382
AcuI	CTGAAG	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	549, 848
AfaI	GTAC	3 cut(s)	194, 674, 760
AfiI	CCNNNNNNNGG	4 cut(s)	111, 285, 307, 810
AgsI	TTSAA	2 cut(s)	616, 680
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	40, 648
AluBI	AGCT	3 cut(s)	709, 718, 801
AluI	AGCT	3 cut(s)	709, 718, 801
Alw21I	GWGCWC	1 cut(s)	803
Alw26I	GTCTC	2 cut(s)	225, 855
AlwI	GGATC	6 cut(s)	174, 407, 518, 531, 673, 821
Ama87I	CYCGRG	2 cut(s)	422, 719
AoxI	GGCC	4 cut(s)	276, 298, 382, 636
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	422, 719
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	728, 803
Bbv12I	GWGCWC	1 cut(s)	803
BbvCI	CCTCAGC	1 cut(s)	714
BccI	CCATC	3 cut(s)	453, 503, 647
BciT130I	CCWGG	2 cut(s)	42, 650
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	2 cut(s)	13, 694
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	225, 855
BfaI	CTAG	2 cut(s)	255, 833
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	275
BmcAI	AGTACT	1 cut(s)	760
Bme1390I	CCNGG	3 cut(s)	42, 302, 650
BmeT110I	CYCGRG	2 cut(s)	422, 719
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	525, 564
BmrFI	CCNGG	3 cut(s)	42, 302, 650
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	258
BplI	GAGNNNNNCTC	4 cut(s)	713, 745, 715, 747
BpmI	CTGGAG	1 cut(s)	844
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	693
BsaHI	GRCGYC	2 cut(s)	549, 848
BsaJI	CCNNGG	4 cut(s)	161, 273, 364, 633
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 785, 815
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 285, 307, 810
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	3 cut(s)	253, 639, 827
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	42, 650
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	4 cut(s)	161, 273, 364, 633
BseGI	GGATG	4 cut(s)	55, 464, 495, 658
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	4 cut(s)	111, 285, 307, 810
BseMII	CTCAG	2 cut(s)	728, 762
BseNI	ACTGG	3 cut(s)	253, 639, 827
BseRI	GAGGAG	2 cut(s)	212, 432
BseYI	CCCAGC	1 cut(s)	705
BshFI	GGCC	4 cut(s)	278, 300, 384, 638
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	803
BsiHKCI	CYCGRG	2 cut(s)	422, 719
BsiSI	CCGG	3 cut(s)	279, 301, 784
BslFI	GGGAC	2 cut(s)	265, 317
BslI	CCNNNNNNNGG	4 cut(s)	111, 285, 307, 810
BsmAI	GTCTC	2 cut(s)	225, 855
BsmBI	CGTCTC	1 cut(s)	855
BsmFI	GGGAC	2 cut(s)	265, 317
BsnI	GGCC	4 cut(s)	278, 300, 384, 638
BsoBI	CYCGRG	2 cut(s)	422, 719
Bsp1286I	GDGCHC	2 cut(s)	728, 803
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	3 cut(s)	38, 311, 603
BspANI	GGCC	4 cut(s)	278, 300, 384, 638
BspCNI	CTCAG	2 cut(s)	727, 763
BspDI	ATCGAT	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	525, 564
BspPI	GGATC	6 cut(s)	174, 407, 518, 531, 673, 821
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	3 cut(s)	253, 639, 827
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	161, 273, 364, 633
BssNAI	GTATAC	1 cut(s)	35
BssNI	GRCGYC	2 cut(s)	549, 848
BssT1I	CCWWGG	1 cut(s)	161
Bst1107I	GTATAC	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	42, 650
Bst4CI	ACNGT	3 cut(s)	274, 612, 779
Bst6I	CTCTTC	2 cut(s)	738, 803
BstACI	GRCGYC	2 cut(s)	549, 848
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	2 cut(s)	714, 771
BstDSI	CCRYGG	2 cut(s)	161, 273
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	55, 464, 495, 658
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstMAI	GTCTC	2 cut(s)	225, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 715
BstNI	CCWGG	2 cut(s)	42, 650
BstSCI	CCNGG	3 cut(s)	40, 300, 648
BstSFI	CTRYAG	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	166, 523, 665
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	3 cut(s)	166, 523, 665
BstZ17I	GTATAC	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	4 cut(s)	278, 300, 384, 638
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	2 cut(s)	161, 273
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	55, 464, 495, 658
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	579
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	2 cut(s)	557, 837
Csp6I	GTAC	3 cut(s)	193, 673, 759
CspCI	CAANNNNNGTGG	2 cut(s)	191, 226
CviAII	CATG	2 cut(s)	162, 796
CviQI	GTAC	3 cut(s)	193, 673, 759
DdeI	CTNAG	2 cut(s)	714, 771
EaeI	YGGCCR	2 cut(s)	276, 382
Eam1104I	CTCTTC	2 cut(s)	738, 803
EarI	CTCTTC	2 cut(s)	738, 803
Ecl136II	GAGCTC	1 cut(s)	801
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	2 cut(s)	728, 803
Eco32I	GATATC	1 cut(s)	830
Eco53kI	GAGCTC	1 cut(s)	801
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	2 cut(s)	422, 719
EcoICRI	GAGCTC	1 cut(s)	801
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	40, 648
EcoRV	GATATC	1 cut(s)	830
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	686
EcoT38I	GRGCYC	2 cut(s)	728, 803
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	2 cut(s)	165, 799
FaiI	YATR	8 cut(s)	35, 163, 228, 341, 588, 671, 756, 797
FaqI	GGGAC	2 cut(s)	265, 317
FatI	CATG	2 cut(s)	161, 795
FbaI	TGATCA	2 cut(s)	13, 694
FblI	GTMKAC	1 cut(s)	34
FokI	GGATG	4 cut(s)	42, 471, 482, 665
FriOI	GRGCYC	2 cut(s)	728, 803
FspBI	CTAG	2 cut(s)	255, 833
GlaI	GCGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	709
GsuI	CTGGAG	1 cut(s)	844
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	4 cut(s)	278, 300, 384, 638
HapII	CCGG	3 cut(s)	279, 301, 784
HgaI	GACGC	2 cut(s)	557, 837
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	2 cut(s)	549, 848
Hin1II	CATG	2 cut(s)	165, 799
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	3 cut(s)	279, 301, 784
Hpy166II	GTNNAC	2 cut(s)	35, 316
Hpy188III	TCNNGA	9 cut(s)	17, 91, 122, 286, 407, 569, 593, 721, 833
Hpy8I	GTNNAC	2 cut(s)	35, 316
Hpy99I	CGWCG	4 cut(s)	128, 548, 551, 742
HpyAV	CCTTC	2 cut(s)	449, 686
HpyCH4III	ACNGT	3 cut(s)	274, 612, 779
HpyCH4IV	ACGT	2 cut(s)	126, 645
HpyCH4V	TGCA	1 cut(s)	684
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 715
HpyF3I	CTNAG	2 cut(s)	714, 771
HpySE526I	ACGT	2 cut(s)	126, 645
Hsp92I	GRCGYC	2 cut(s)	549, 848
Hsp92II	CATG	2 cut(s)	165, 799
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	2 cut(s)	13, 694
LmnI	GCTCC	2 cut(s)	199, 806
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	2 cut(s)	255, 833
MaeII	ACGT	2 cut(s)	126, 645
MaeIII	GTNAC	2 cut(s)	426, 641
MboII	GAAGA	6 cut(s)	80, 106, 211, 464, 725, 820
MflI	RGATCY	3 cut(s)	166, 523, 665
MhlI	GDGCHC	2 cut(s)	728, 803
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	3 cut(s)	138, 698, 854
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	4 cut(s)	58, 83, 269, 720
Mox20I	TGGCCA	1 cut(s)	384
Mph1103I	ATGCAT	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	384
MspI	CCGG	3 cut(s)	279, 301, 784
MspR9I	CCNGG	3 cut(s)	42, 302, 650
MvaI	CCWGG	2 cut(s)	42, 650
MwoI	GCNNNNNNNGC	2 cut(s)	275, 715
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	161
NlaIII	CATG	2 cut(s)	165, 799
NlaIV	GGNNCC	2 cut(s)	525, 564
NmuCI	GTSAC	2 cut(s)	426, 641
NsiI	ATGCAT	1 cut(s)	686
PaeR7I	CTCGAG	2 cut(s)	422, 719
PfoI	TCCNGGA	1 cut(s)	648
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	803
Psp6I	CCWGG	2 cut(s)	40, 648
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	2 cut(s)	40, 648
PspN4I	GGNNCC	2 cut(s)	525, 564
PspPI	GGNCC	1 cut(s)	298
PspXI	VCTCGAGB	1 cut(s)	422
PsuI	RGATCY	3 cut(s)	166, 523, 665
RsaI	GTAC	3 cut(s)	194, 674, 760
RsaNI	GTAC	3 cut(s)	193, 673, 759
SacI	GAGCTC	1 cut(s)	803
SaqAI	TTAA	1 cut(s)	480
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	760
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	42, 302, 650
SduI	GDGCHC	2 cut(s)	728, 803
SfaNI	GCATC	1 cut(s)	693
SfcI	CTRYAG	1 cut(s)	415
Sfr274I	CTCGAG	2 cut(s)	422, 719
SlaI	CTCGAG	2 cut(s)	422, 719
SmlI	CTYRAG	3 cut(s)	89, 422, 719
SmoI	CTYRAG	3 cut(s)	89, 422, 719
Sse9I	AATT	3 cut(s)	138, 698, 854
SsiI	CCGC	3 cut(s)	38, 311, 603
SspMI	CTAG	2 cut(s)	255, 833
SstI	GAGCTC	1 cut(s)	803
StyD4I	CCNGG	3 cut(s)	40, 300, 648
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	274, 612, 779
TaiI	ACGT	2 cut(s)	129, 648
TaqI	TCGA	7 cut(s)	123, 156, 370, 423, 570, 687, 720
TasI	AATT	3 cut(s)	138, 698, 854
TatI	WGTACW	1 cut(s)	758
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	2 cut(s)	426, 641
Tsp45I	GTSAC	2 cut(s)	426, 641
TspDTI	ATGAA	3 cut(s)	20, 44, 81
TspGWI	ACGGA	2 cut(s)	221, 726
TspRI	CASTG	1 cut(s)	823
XagI	CCTNNNNNAGG	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	832
XhoI	CTCGAG	2 cut(s)	422, 719
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	2 cut(s)	255, 833
ZrmI	AGTACT	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.