Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

7907774 .. 7910040

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAAGCAACAAGGGAAACATTACTACTCCATGTGGCAAACATTGTTCGAAATCGATACAAAGTATGTTCCGATTAAACCCATTGGAAGAGGAGCTTATGGTGTGGTTTGTTCTTCTATCAATCGTGAGACTAATGAGAGAGTTGCTATTAAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAACTTAAACTTCTTAGGCATGTGAGGCATGAGAATGTGATCGCGCTTAAAGATGTTATGTTGCCTGCTAATAGATCCAGTTTCAAGGATGTTTATTTGGTTTATGAGCTAATGGATACTGATCTTCATCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAGTACTTCTTGTTTCAGTTGCTTAGAGGGTTGAAGTATCTTCATTCTGCAAACATACTTCACCGGGATTTGAAGCCCGGGAACCTCTTAGTTAATGCGAACTGCGATCTCAAGATTTGTGATTTCGGGTTGGCGAGAACGAGCCAAGGTAATGAACAGTTCATGACTGAGTATGTGGTTACACGTTGGTACAGAGCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTATGGTCGGTTGGTTGCATATTCGCGGAGATTCTTGGTAGGAAACCGATTTTTCCAGGAACAGAATGCTTGAATCAGCTTAAGCTAATCATCAACGTTGTTGGTAGCCAACAAGAATCTGATATTCGGTTCATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCGTACTCAAGAGGAACTCATCTCTCCAATCTTTATCCACAAGCCAATCCTCTAGCTATAGATTTGTTACAGAGGATGCTTGTGTTTGATCCAACCAAGAGAATCTCTGTAACCGATGCGCTCTTACACCCGTATATGGCGGGGTTGTTTGATCCTGGATCCAATCCGCCTGCACATGTCCCAATCTCTCTGGACATAGATGAAAACATGGAGGAACCAGTGATAAGAGAGATGATGTGGAATGAGATGCTTTATTACCACCCTGAAGCTGAAATCTCAAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

368

Amino Acids

42.3

Weight (kDa)

6.86

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 319	1.1e-67	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 229	2.1e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
AccB7I	CCANNNNNTGG	1 cut(s)	26
AccII	CGCG	2 cut(s)	278, 674
AciI	CCGC	3 cut(s)	674, 959, 986
AclI	AACGTT	2 cut(s)	227, 744
AclWI	GGATC	5 cut(s)	303, 902, 965, 972, 985
AcuI	CTGAAG	1 cut(s)	1104
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	3 cut(s)	410, 596, 824
AfiI	CCNNNNNNNGG	2 cut(s)	26, 955
AflII	CTTAAG	1 cut(s)	728
AflIII	ACRYGT	2 cut(s)	587, 994
AgsI	TTSAA	4 cut(s)	319, 439, 478, 721
AjnI	CCWGG	2 cut(s)	703, 973
AluBI	AGCT	8 cut(s)	125, 343, 610, 727, 733, 797, 875, 1088
AluI	AGCT	8 cut(s)	125, 343, 610, 727, 733, 797, 875, 1088
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	3 cut(s)	152, 390, 819
AlwI	GGATC	5 cut(s)	303, 902, 965, 972, 985
Ama87I	CYCGRG	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	280, 940
AsuC2I	CCSGG	3 cut(s)	470, 483, 484
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	977
Bbv12I	GWGCWC	1 cut(s)	604
BciT130I	CCWGG	2 cut(s)	705, 975
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	3 cut(s)	470, 483, 484
BcoDI	GTCTC	3 cut(s)	152, 390, 819
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	1 cut(s)	876
BfrI	CTTAAG	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	343
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	5 cut(s)	470, 483, 484, 705, 975
BmeT110I	CYCGRG	1 cut(s)	482
BmiI	GGNNCC	4 cut(s)	488, 637, 979, 1035
BmrFI	CCNGG	5 cut(s)	470, 483, 484, 705, 975
BmsI	GCATC	4 cut(s)	205, 885, 925, 1056
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	500, 811
BpuMI	CCSGG	3 cut(s)	470, 483, 484
Bsa29I	ATCGAT	1 cut(s)	84
BsaBI	GATNNNNATC	2 cut(s)	354, 360
BsaJI	CCNNGG	2 cut(s)	482, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 955
Bse1I	ACTGG	2 cut(s)	312, 1037
Bse8I	GATNNNNATC	2 cut(s)	354, 360
BseBI	CCWGG	2 cut(s)	705, 975
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	482, 550
BseGI	GGATG	2 cut(s)	328, 900
BseJI	GATNNNNATC	2 cut(s)	354, 360
BseLI	CCNNNNNNNGG	2 cut(s)	26, 955
BseMII	CTCAG	3 cut(s)	395, 564, 597
BseNI	ACTGG	2 cut(s)	312, 1037
BseRI	GAGGAG	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	2 cut(s)	278, 674
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	469, 483
BslFI	GGGAC	1 cut(s)	983
BslI	CCNNNNNNNGG	2 cut(s)	26, 955
BsmAI	GTCTC	3 cut(s)	152, 390, 819
BsmFI	GGGAC	1 cut(s)	983
BsmI	GAATGC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
BspACI	CCGC	3 cut(s)	674, 959, 986
BspCNI	CTCAG	3 cut(s)	394, 565, 598
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	2 cut(s)	278, 674
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	4 cut(s)	488, 637, 979, 1035
BspPI	GGATC	5 cut(s)	303, 902, 965, 972, 985
BspT104I	TTCGAA	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	312, 1037
BssECI	CCNNGG	2 cut(s)	482, 550
BssMI	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	705, 975
Bst4CI	ACNGT	1 cut(s)	564
Bst6I	CTCTTC	2 cut(s)	112, 822
BstAFI	CTTAAG	1 cut(s)	728
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	300, 990
BstDEI	CTNAG	6 cut(s)	248, 381, 428, 493, 573, 606
BstF5I	GGATG	2 cut(s)	328, 900
BstFNI	CGCG	2 cut(s)	278, 674
BstHHI	GCGC	2 cut(s)	280, 940
BstKTI	GATC	8 cut(s)	276, 311, 358, 400, 514, 910, 973, 980
BstMAI	GTCTC	3 cut(s)	152, 390, 819
BstMBI	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	2 cut(s)	705, 975
BstNSI	RCATGY	2 cut(s)	257, 998
BstSCI	CCNGG	5 cut(s)	468, 481, 482, 703, 973
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	2 cut(s)	278, 674
BstX2I	RGATCY	2 cut(s)	308, 977
BstYI	RGATCY	2 cut(s)	308, 977
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	343
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	328, 900
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	400, 1044
Cac8I	GCNNGC	2 cut(s)	300, 990
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	2 cut(s)	280, 940
Cfr9I	CCCGGG	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	409, 595, 823
CviAII	CATG	6 cut(s)	61, 254, 263, 568, 995, 1027
CviQI	GTAC	3 cut(s)	409, 595, 823
DdeI	CTNAG	6 cut(s)	248, 381, 428, 493, 573, 606
DpnI	GATC	8 cut(s)	275, 310, 357, 399, 513, 909, 972, 979
DpnII	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
DraIII	CACNNNGTG	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	112, 822
EarI	CTCTTC	2 cut(s)	112, 822
EciI	GGCGGA	1 cut(s)	975
Eco130I	CCWWGG	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	1104
Eco88I	CYCGRG	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	703, 973
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	6 cut(s)	64, 257, 266, 571, 998, 1030
FalI	AAGNNNNNCTT	4 cut(s)	109, 141, 398, 430
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	6 cut(s)	60, 253, 262, 567, 994, 1026
FauI	CCCGC	1 cut(s)	952
FbaI	TGATCA	1 cut(s)	397
FokI	GGATG	2 cut(s)	335, 907
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	2 cut(s)	279, 939
HapII	CCGG	2 cut(s)	469, 483
HhaI	GCGC	2 cut(s)	280, 940
Hin1II	CATG	6 cut(s)	64, 257, 266, 571, 998, 1030
Hin6I	GCGC	2 cut(s)	278, 938
HinP1I	GCGC	2 cut(s)	278, 938
HinfI	GANTC	6 cut(s)	187, 205, 679, 721, 764, 921
HpaII	CCGG	2 cut(s)	469, 483
HphI	GGTGA	1 cut(s)	458
Hpy188I	TCNGA	4 cut(s)	102, 366, 394, 769
Hpy188III	TCNNGA	5 cut(s)	155, 517, 568, 828, 1010
HpyAV	CCTTC	1 cut(s)	795
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4IV	ACGT	3 cut(s)	227, 589, 744
HpyCH4V	TGCA	4 cut(s)	405, 455, 666, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	6 cut(s)	248, 381, 428, 493, 573, 606
HpySE526I	ACGT	3 cut(s)	227, 589, 744
Hsp92II	CATG	6 cut(s)	64, 257, 266, 571, 998, 1030
HspAI	GCGC	2 cut(s)	278, 938
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
LmnI	GCTCC	1 cut(s)	122
LweI	GCATC	4 cut(s)	205, 885, 925, 1056
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	3 cut(s)	227, 589, 744
MaeIII	GTNAC	3 cut(s)	583, 885, 928
MalI	GATC	8 cut(s)	275, 310, 357, 399, 513, 909, 972, 979
MboI	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
MboII	GAAGA	6 cut(s)	129, 135, 350, 437, 605, 809
MflI	RGATCY	2 cut(s)	308, 977
MhlI	GDGCHC	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	935
MseI	TTAA	8 cut(s)	33, 105, 180, 240, 282, 372, 498, 729
MslI	CAYNNNNRTG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	2 cut(s)	469, 483
MspR9I	CCNGG	5 cut(s)	470, 483, 484, 705, 975
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	705, 975
MvnI	CGCG	2 cut(s)	278, 674
MwoI	GCNNNNNNNGC	1 cut(s)	259
NciI	CCSGG	3 cut(s)	470, 483, 484
NdeII	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
NlaIII	CATG	6 cut(s)	64, 257, 266, 571, 998, 1030
NlaIV	GGNNCC	4 cut(s)	488, 637, 979, 1035
NspI	RCATGY	2 cut(s)	257, 998
NspV	TTCGAA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	994
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	6 cut(s)	187, 205, 679, 721, 764, 921
PflMI	CCANNNNNTGG	1 cut(s)	26
PfoI	TCCNGGA	2 cut(s)	703, 973
PscI	ACATGT	1 cut(s)	994
PsiI	TTATAA	1 cut(s)	809
Psp1406I	AACGTT	2 cut(s)	227, 744
Psp6I	CCWGG	2 cut(s)	703, 973
PspGI	CCWGG	2 cut(s)	703, 973
PspN4I	GGNNCC	4 cut(s)	488, 637, 979, 1035
PsuI	RGATCY	2 cut(s)	308, 977
RsaI	GTAC	3 cut(s)	410, 596, 824
RsaNI	GTAC	3 cut(s)	409, 595, 823
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	8 cut(s)	33, 105, 180, 240, 282, 372, 498, 729
Sau3AI	GATC	8 cut(s)	273, 308, 355, 397, 511, 907, 970, 977
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	5 cut(s)	470, 483, 484, 705, 975
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	4 cut(s)	205, 885, 925, 1056
SfcI	CTRYAG	1 cut(s)	876
SfuI	TTCGAA	1 cut(s)	78
SmaI	CCCGGG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	3 cut(s)	515, 728, 826
SmoI	CTYRAG	3 cut(s)	515, 728, 826
SsiI	CCGC	3 cut(s)	674, 959, 986
SspMI	CTAG	1 cut(s)	872
StyD4I	CCNGG	5 cut(s)	468, 481, 482, 703, 973
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	564
TaiI	ACGT	3 cut(s)	230, 592, 747
TaqI	TCGA	3 cut(s)	78, 84, 799
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	6 cut(s)	187, 205, 679, 721, 764, 921
Tru1I	TTAA	8 cut(s)	33, 105, 180, 240, 282, 372, 498, 729
Tru9I	TTAA	8 cut(s)	33, 105, 180, 240, 282, 372, 498, 729
TscAI	CASTG	2 cut(s)	407, 1044
TspDTI	ATGAA	6 cut(s)	350, 437, 556, 573, 769, 1035
TspGWI	ACGGA	1 cut(s)	810
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	2 cut(s)	407, 1044
Van91I	CCANNNNNTGG	1 cut(s)	26
Vha464I	CTTAAG	1 cut(s)	728
XceI	RCATGY	2 cut(s)	257, 998
XmaI	CCCGGG	1 cut(s)	482
XspI	CTAG	1 cut(s)	872
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.