Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

7165740 .. 7166611

Gene Structure 872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0089700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACGATCTTCTTTTTCTTCTTCATATGTTCTCACATTCCCTCATCATCCTTTGCTGCTGTGCAAGACTTTTGTGTTGCAGACTACACAGCTCCTTCTGGACCTGCAGGCTACTCCTGCAAAAGGCCCGAAACTGTTACAGTGAATGATTTTGTATACTCGGGCCTAGGAGTTTCCGGTAACACGTCAAACCTTTTCAGAGTTGGAGATATCCCTGCATATGCTGATCAAGTCCCGGGTTTGAATGGCCTCGGCATTTCAATGGCTCGCGTAGACATAGCTCCCGGTGGTGTTGTCCCATTGCACATTCACCGCGGAGCTACAGAAGTGTTCCTTGTTGTACAAGGAACACTAGTTGCTGGGTTCATTTCCTCGGATCGGAACACAGTTTATATAACAACTATTAAGAGTGGTGATATTATGGTTTTCCCTCAAGGGTTATTGCACTTCCAAGTGAATATTGGAGCTACTCGAGTCGTTGGATTTGCTAGCTACAGTAGTCAAAGTCCAGGTCTGCAGATTCTGGACTATGCACTATTTCAAGGTAACTTTCCTACTCGATTGATAGCTCGCACTACTTTCCTTGACATTCTTGAGATAAGGAAGCTTAAGTTTATCTTTGGTGGTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

211

Amino Acids

22.71

Weight (kDa)

6.89

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	73 - 196	7.2e-31	Cupin
Cupin_2	PF07883	90 - 159	1.2e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AccI	GTMKAC	2 cut(s)	156, 273
AccII	CGCG	2 cut(s)	270, 315
AciI	CCGC	2 cut(s)	313, 315
AclWI	GGATC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	342, 628
AfiI	CCNNNNNNNGG	2 cut(s)	123, 378
AflII	CTTAAG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	244, 261, 542
AhlI	ACTAGT	1 cut(s)	352
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	7 cut(s)	92, 281, 320, 467, 492, 569, 607
AluI	AGCT	7 cut(s)	92, 281, 320, 467, 492, 569, 607
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	523
Ama87I	CYCGRG	3 cut(s)	160, 235, 471
AoxI	GGCC	3 cut(s)	125, 163, 247
ApeKI	GCWGC	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
AspA2I	CCTAGG	1 cut(s)	166
AspS9I	GGNCC	3 cut(s)	101, 126, 163
AsuC2I	CCSGG	3 cut(s)	236, 237, 285
AsuHPI	GGTGA	2 cut(s)	302, 425
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	3 cut(s)	160, 235, 471
AvaII	GGWCC	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	3 cut(s)	236, 237, 285
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	3 cut(s)	167, 353, 489
BfmI	CTRYAG	4 cut(s)	105, 321, 493, 515
BfrI	CTTAAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	57
BlnI	CCTAGG	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	4 cut(s)	236, 237, 285, 510
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	3 cut(s)	160, 235, 471
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	101, 126, 163
BmrFI	CCNGG	4 cut(s)	236, 237, 285, 510
BmtI	GCTAGC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	417, 614
BpuMI	CCSGG	3 cut(s)	236, 237, 285
BsaJI	CCNNGG	5 cut(s)	166, 235, 250, 313, 372
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 378
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	5 cut(s)	166, 235, 250, 313, 372
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	123, 378
BseMI	GCAATG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	270, 315
BshFI	GGCC	3 cut(s)	127, 165, 249
BsiHKCI	CYCGRG	3 cut(s)	160, 235, 471
BsiSI	CCGG	3 cut(s)	177, 236, 285
BslFI	GGGAC	2 cut(s)	218, 281
BslI	CCNNNNNNNGG	2 cut(s)	123, 378
BsmFI	GGGAC	2 cut(s)	218, 281
BsnI	GGCC	3 cut(s)	127, 165, 249
BsoBI	CYCGRG	3 cut(s)	160, 235, 471
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	6, 226, 376
BspACI	CCGC	2 cut(s)	313, 315
BspANI	GGCC	3 cut(s)	127, 165, 249
BspFNI	CGCG	2 cut(s)	270, 315
BspMAI	CTGCAG	2 cut(s)	109, 519
BspMI	ACCTGC	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	340
BssECI	CCNNGG	5 cut(s)	166, 235, 250, 313, 372
BssMI	GATC	3 cut(s)	6, 226, 376
BssNAI	GTATAC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	4 cut(s)	136, 142, 388, 497
BstAFI	CTTAAG	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	109, 268, 490, 571
BstDSI	CCRYGG	1 cut(s)	313
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	270, 315
BstKTI	GATC	3 cut(s)	9, 229, 379
BstMBI	GATC	3 cut(s)	6, 226, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	4 cut(s)	234, 235, 283, 508
BstSFI	CTRYAG	4 cut(s)	105, 321, 493, 515
BstUI	CGCG	2 cut(s)	270, 315
BstV1I	GCAGC	1 cut(s)	43
BstZ17I	GTATAC	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	127, 165, 249
BtgI	CCRYGG	1 cut(s)	313
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	4 cut(s)	109, 268, 490, 571
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr13I	GGNCC	3 cut(s)	101, 126, 163
Cfr42I	CCGCGG	1 cut(s)	316
Cfr9I	CCCGGG	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	341, 627
CviQI	GTAC	2 cut(s)	341, 627
DpnI	GATC	3 cut(s)	8, 228, 378
DpnII	GATC	3 cut(s)	6, 226, 376
Eco130I	CCWWGG	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	3 cut(s)	160, 235, 471
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FalI	AAGNNNNNCTT	4 cut(s)	318, 350, 602, 634
FaqI	GGGAC	2 cut(s)	218, 281
FauNDI	CATATG	2 cut(s)	26, 220
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	2 cut(s)	156, 273
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	3 cut(s)	167, 353, 489
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	127, 165, 249
HapII	CCGG	3 cut(s)	177, 236, 285
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	2 cut(s)	474, 520
HpaII	CCGG	3 cut(s)	177, 236, 285
HphI	GGTGA	2 cut(s)	302, 425
Hpy166II	GTNNAC	2 cut(s)	157, 274
Hpy188I	TCNGA	3 cut(s)	200, 376, 381
Hpy188III	TCNNGA	3 cut(s)	99, 524, 593
Hpy8I	GTNNAC	2 cut(s)	157, 274
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	4 cut(s)	136, 142, 388, 497
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	9 cut(s)	64, 80, 107, 120, 218, 304, 445, 517, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	226
KspI	CCGCGG	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	6, 226, 376
LmnI	GCTCC	4 cut(s)	97, 286, 317, 464
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	3 cut(s)	167, 353, 489
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	3 cut(s)	136, 179, 545
MalI	GATC	3 cut(s)	8, 228, 378
MboI	GATC	3 cut(s)	6, 226, 376
MboII	GAAGA	2 cut(s)	10, 13
MluCI	AATT	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	184, 460
MnlI	CCTC	4 cut(s)	52, 260, 382, 441
MseI	TTAA	3 cut(s)	405, 609, 634
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	3 cut(s)	177, 236, 285
MspR9I	CCNGG	4 cut(s)	236, 237, 285, 510
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	270, 315
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	3 cut(s)	236, 237, 285
NdeI	CATATG	2 cut(s)	26, 220
NdeII	GATC	3 cut(s)	6, 226, 376
NheI	GCTAGC	1 cut(s)	488
NmeAIII	GCCGAG	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	520
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	508
PspPI	GGNCC	3 cut(s)	101, 126, 163
PspXI	VCTCGAGB	1 cut(s)	471
PstI	CTGCAG	2 cut(s)	109, 519
PstNI	CAGNNNCTG	1 cut(s)	523
RsaI	GTAC	2 cut(s)	342, 628
RsaNI	GTAC	2 cut(s)	341, 627
RseI	CAYNNNNRTG	1 cut(s)	260
SacII	CCGCGG	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	405, 609, 634
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	6, 226, 376
Sau96I	GGNCC	3 cut(s)	101, 126, 163
SbfI	CCTGCAGG	1 cut(s)	109
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	4 cut(s)	236, 237, 285, 510
SdaI	CCTGCAGG	1 cut(s)	109
SfcI	CTRYAG	4 cut(s)	105, 321, 493, 515
Sfr274I	CTCGAG	1 cut(s)	471
Sfr303I	CCGCGG	1 cut(s)	316
SgrBI	CCGCGG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	471
SmaI	CCCGGG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	4 cut(s)	432, 471, 593, 608
SmoI	CTYRAG	4 cut(s)	432, 471, 593, 608
SpeI	ACTAGT	1 cut(s)	352
Sse8387I	CCTGCAGG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	2 cut(s)	313, 315
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	3 cut(s)	167, 353, 489
StyD4I	CCNGG	4 cut(s)	234, 235, 283, 508
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	4 cut(s)	136, 142, 388, 497
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	2 cut(s)	472, 559
TasI	AATT	1 cut(s)	631
TatI	WGTACW	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	3 cut(s)	405, 609, 634
Tru9I	TTAA	3 cut(s)	405, 609, 634
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	13, 355
TspMI	CCCGGG	1 cut(s)	235
TspRI	CASTG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	471
XmaI	CCCGGG	1 cut(s)	235
XmaJI	CCTAGG	1 cut(s)	166
XmiI	GTMKAC	2 cut(s)	156, 273
XspI	CTAG	3 cut(s)	167, 353, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.