Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

12489526 .. 12492434

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCAACTTTAGTGGAGCCTCCGAATGGAATCAGGCAACGGGGGAAGCAATATTACTCAATGTGGCAAACGTTGTTCGAGGTTGATTCCAAGTATGTTCCGATCAAACCCATAGGGAGAGGAGCATATGGTGTAGTCTGCTCGTCCATCAACAGGGAAACGAATGAGAAAGTTGCAATCAAGAAGATCCATAACGTGTTTGAGAACCGCATTGATGCATTGAGGACACTGAGGGAGTTGAAGCTACTTAGAAATATCCAGCACGAGAATGTGATTGCTTTGAAGGATGTTATGATGCCTATCCACAGGACAAGTTTCAAGGACGTGTATTTTGTGTACGAGCTCATGGATACTGATCTTCACCAAATTATAAAGTCTTCACAGCCACTTTCCACTGACCATTGCAAATACTTTCTATTTCAGCTGCTTAGGGGGCTCAAGTATCTTCATTCAGCAAACATTCTTCACCGAGACTTGAAGCCTGGGAACCTGCTCATCAATGCTAACTGCGACTTAAAGATATGTGATTTTGGGTTGGCCCGAACCAGCAGAGGTAATGACCAGTTCATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCAGAGCTGCTACTGTGCTGTGACAATTACGGAACATCCATTGACGTCTGGTCGGTAGGATGTATCTTTGCTGAGATTCTTGGCCGAAAGCCAATCTTTCCCGGAACTGAATGCCTCAACCAACTAAAACTAATTATCAATGTTCTTGGTAGCCAGCATGAACCTGATCTCGCATTCATTGACAATCAGAAAGCCAGGAAGTTCATCAAGTCACTGCCCTATTCAAGGGGGACACATTTCTCCCGTCTGTACCCTCAAGCCGATCCTTTGGCTATAGATTTGTTGCGAAGGATGCTTGTGTTTGATCCAACTAAGAGAATCACCGTCTCGGAAGCACTCCAACATCCTTACATGTCAGGGCTATATGATCCCAGAAGCAATCCTCTTGTTCATGTTCCGATCAACCTCGACATAGATGAGAGTTTAGGCGAACATATGATTCGGGAGATGATGTGGAACGAGATGCTTCACTACCATCCAGAAGCTGCTTCTTCCGACCCTTTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

370

Amino Acids

42.8

Weight (kDa)

8.32

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 319	9.8e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 229	1.9e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AatII	GACGTC	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	498
AciI	CCGC	1 cut(s)	208
AclI	AACGTT	1 cut(s)	71
AclWI	GGATC	4 cut(s)	181, 860, 902, 965
AcoI	YGGCCR	1 cut(s)	685
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	2 cut(s)	338, 854
AfiI	CCNNNNNNNGG	3 cut(s)	26, 153, 828
AflIII	ACRYGT	3 cut(s)	195, 324, 954
AgsI	TTSAA	5 cut(s)	241, 283, 319, 478, 828
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	481, 797
AluBI	AGCT	5 cut(s)	244, 343, 424, 610, 1088
AluI	AGCT	5 cut(s)	244, 343, 424, 610, 1088
Alw21I	GWGCWC	2 cut(s)	345, 604
Alw26I	GTCTC	2 cut(s)	465, 934
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	4 cut(s)	181, 860, 902, 965
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	2 cut(s)	537, 685
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	424, 610, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	3 cut(s)	353, 458, 916
BaeGI	GKGCMC	1 cut(s)	604
BanII	GRGCYC	2 cut(s)	345, 438
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	345, 604
BbvI	GCAGC	3 cut(s)	411, 597, 1075
BccI	CCATC	2 cut(s)	155, 1086
BciT130I	CCWGG	2 cut(s)	483, 799
BciVI	GTATCC	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	465, 934
BfaI	CTAG	1 cut(s)	1111
BfmI	CTRYAG	1 cut(s)	876
BfuAI	ACCTGC	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	425, 611, 1089
BlsI	GCNGC	3 cut(s)	426, 612, 1090
Bme1390I	CCNGG	3 cut(s)	483, 705, 799
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	18, 488
BmrFI	CCNGG	3 cut(s)	483, 705, 799
BmsI	GCATC	4 cut(s)	205, 285, 885, 1056
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	422, 843
BpuMI	CCSGG	1 cut(s)	705
BsaBI	GATNNNNATC	2 cut(s)	299, 354
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	1040, 1070
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 153, 828
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	2 cut(s)	299, 354
BseBI	CCWGG	2 cut(s)	483, 799
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	6 cut(s)	292, 638, 668, 900, 946, 1078
BseJI	GATNNNNATC	2 cut(s)	299, 354
BseLI	CCNNNNNNNGG	3 cut(s)	26, 153, 828
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	221, 666
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	411, 597, 1075
BshFI	GGCC	2 cut(s)	539, 687
BsiHKAI	GWGCWC	2 cut(s)	345, 604
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	3 cut(s)	26, 153, 828
BsmAI	GTCTC	2 cut(s)	465, 934
BsmBI	CGTCTC	1 cut(s)	934
BsmFI	GGGAC	1 cut(s)	847
BsmI	GAATGC	2 cut(s)	719, 776
BsnI	GGCC	2 cut(s)	539, 687
Bsp1286I	GDGCHC	3 cut(s)	345, 438, 604
Bsp143I	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	539, 687
BspCNI	CTCAG	2 cut(s)	222, 667
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	18, 488
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	4 cut(s)	181, 860, 902, 965
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
BssNI	GRCGYC	1 cut(s)	648
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	483, 799
Bst4CI	ACNGT	2 cut(s)	618, 928
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	5 cut(s)	230, 248, 428, 675, 915
BstENI	CCTNNNNNAGG	1 cut(s)	826
BstF5I	GGATG	6 cut(s)	292, 638, 668, 900, 946, 1078
BstKTI	GATC	8 cut(s)	105, 189, 358, 772, 868, 910, 973, 1005
BstMAI	GTCTC	2 cut(s)	465, 934
BstMBI	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 895
BstNI	CCWGG	2 cut(s)	483, 799
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	3 cut(s)	481, 703, 797
BstSFI	CTRYAG	1 cut(s)	876
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	411, 597, 1075
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	539, 687
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	6 cut(s)	292, 638, 668, 900, 946, 1078
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	3 cut(s)	227, 393, 815
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	758
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	337, 853
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	5 cut(s)	346, 568, 761, 955, 995
CviQI	GTAC	2 cut(s)	337, 853
DdeI	CTNAG	5 cut(s)	230, 248, 428, 675, 915
DpnI	GATC	8 cut(s)	104, 188, 357, 771, 867, 909, 972, 1004
DpnII	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	1 cut(s)	685
Eam1105I	GACNNNNNGTC	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	2 cut(s)	345, 438
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	826
EcoRII	CCWGG	2 cut(s)	481, 797
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	345, 438
Esp3I	CGTCTC	1 cut(s)	934
FaeI	CATG	5 cut(s)	349, 571, 764, 958, 998
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	5 cut(s)	345, 567, 760, 954, 994
FauNDI	CATATG	2 cut(s)	127, 1038
Fnu4HI	GCNGC	3 cut(s)	425, 611, 1089
FokI	GGATG	6 cut(s)	299, 625, 675, 907, 933, 1065
FriOI	GRGCYC	2 cut(s)	345, 438
Fsp4HI	GCNGC	3 cut(s)	425, 611, 1089
FspBI	CTAG	1 cut(s)	1111
GluI	GCNGC	3 cut(s)	425, 611, 1089
HaeIII	GGCC	2 cut(s)	539, 687
HapII	CCGG	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	349, 571, 764, 958, 998
HinfI	GANTC	5 cut(s)	30, 86, 679, 921, 1042
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	3 cut(s)	353, 458, 916
Hpy166II	GTNNAC	2 cut(s)	337, 602
Hpy188I	TCNGA	6 cut(s)	24, 102, 792, 934, 1002, 1099
Hpy188III	TCNNGA	4 cut(s)	181, 568, 1046, 1082
Hpy8I	GTNNAC	2 cut(s)	337, 602
HpyAV	CCTTC	2 cut(s)	277, 885
HpyCH4III	ACNGT	2 cut(s)	618, 928
HpyCH4IV	ACGT	4 cut(s)	71, 195, 324, 648
HpyCH4V	TGCA	4 cut(s)	176, 218, 405, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 895
HpyF3I	CTNAG	5 cut(s)	230, 248, 428, 675, 915
HpySE526I	ACGT	4 cut(s)	71, 195, 324, 648
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	349, 571, 764, 958, 998
Kzo9I	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
LmnI	GCTCC	2 cut(s)	16, 122
Lsp1109I	GCAGC	3 cut(s)	411, 597, 1075
LweI	GCATC	4 cut(s)	205, 285, 885, 1056
MaeI	CTAG	1 cut(s)	1111
MaeII	ACGT	4 cut(s)	71, 195, 324, 648
MaeIII	GTNAC	3 cut(s)	583, 623, 813
MalI	GATC	8 cut(s)	104, 188, 357, 771, 867, 909, 972, 1004
MboI	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
MboII	GAAGA	6 cut(s)	196, 350, 369, 437, 455, 1086
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	3 cut(s)	345, 438, 604
MluCI	AATT	3 cut(s)	366, 628, 735
MmeI	TCCRAC	2 cut(s)	935, 967
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	483, 705, 799
Mva1269I	GAATGC	2 cut(s)	719, 776
MvaI	CCWGG	2 cut(s)	483, 799
MwoI	GCNNNNNNNGC	2 cut(s)	433, 895
NciI	CCSGG	1 cut(s)	705
NdeI	CATATG	2 cut(s)	127, 1038
NdeII	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
NlaIII	CATG	5 cut(s)	349, 571, 764, 958, 998
NlaIV	GGNNCC	2 cut(s)	18, 488
NmuCI	GTSAC	3 cut(s)	583, 623, 813
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	958
PagI	TCATGA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PctI	GAATGC	2 cut(s)	719, 776
PfeI	GAWTC	5 cut(s)	30, 86, 679, 921, 1042
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	426, 612, 1090
PscI	ACATGT	1 cut(s)	954
PsiI	TTATAA	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	481, 797
PspGI	CCWGG	2 cut(s)	481, 797
PspN4I	GGNNCC	2 cut(s)	18, 488
PspPI	GGNCC	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	338, 854
RsaNI	GTAC	2 cut(s)	337, 853
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	3 cut(s)	425, 611, 1089
Sau3AI	GATC	8 cut(s)	102, 186, 355, 769, 865, 907, 970, 1002
Sau96I	GGNCC	1 cut(s)	538
ScrFI	CCNGG	3 cut(s)	483, 705, 799
SduI	GDGCHC	3 cut(s)	345, 438, 604
SfaNI	GCATC	4 cut(s)	205, 285, 885, 1056
SfcI	CTRYAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	437, 858
SmoI	CTYRAG	2 cut(s)	437, 858
Sse9I	AATT	3 cut(s)	366, 628, 735
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	1111
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	3 cut(s)	481, 703, 797
TaaI	ACNGT	2 cut(s)	618, 928
TaiI	ACGT	4 cut(s)	74, 198, 327, 651
TaqI	TCGA	2 cut(s)	78, 1011
TasI	AATT	3 cut(s)	366, 628, 735
TfiI	GAWTC	5 cut(s)	30, 86, 679, 921, 1042
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	3 cut(s)	234, 400, 822
TseFI	GTSAC	3 cut(s)	583, 623, 813
TseI	GCWGC	3 cut(s)	424, 610, 1088
Tsp45I	GTSAC	3 cut(s)	583, 623, 813
TspDTI	ATGAA	6 cut(s)	437, 556, 769, 777, 796, 983
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	3 cut(s)	234, 400, 822
VneI	GTGCAC	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	826
XceI	RCATGY	1 cut(s)	958
XspI	CTAG	1 cut(s)	1111
ZraI	GACGTC	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.