Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019884.1

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2268 .. 3102

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019884.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgagagacattgcagcctcttacattttcctgcttagggggctcaagtatcttcattcagcaaacattcttcaccgagacttgaagcctgggaacctgctcatcaatgctaactgcgacttaaagatatgtgattttgggttggcccgaaccagcagaggtaatgaccagttcatgacagagtatgttgtcactcgctggtatcgtgcaccagagctgctattatgctgtgacaattacggaacatccattgatgtctggtcagtaggatgtatctttgctgagattcttggccgaaagccaatctttcccggaactgaatgcctcaaccaactaaaactaattatcaatgttcttggtagccagcatgaacctgatctggcattcattgacaatcagaaagccaggaagttcatcaaatcactgccttattcaagggggacacatttctcccgtctgtaccctcaagccgatcctttggctatagatttgttgcaaaggatgcttgtgtttgatccaactaagagaatcaccgtctcggaagcactccaacatccttacatgtcagggctatatgatcccagaagcaatcctcttgttcatgttccgatcaacctcgacatagatgagagtttaggcgaacatatgattcgggagatgatgtggaatgagatgcttcactaccatccagaagctgcttcttccaacccttttacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

239

Amino Acids

27.4

Weight (kDa)

6.49

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	105
AclWI	GGATC	3 cut(s)	467, 509, 572
AcoI	YGGCCR	1 cut(s)	292
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	85, 435
AjnI	CCWGG	2 cut(s)	88, 404
AluBI	AGCT	2 cut(s)	217, 695
AluI	AGCT	2 cut(s)	217, 695
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	72, 541
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	467, 509, 572
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	144, 292
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	14, 217, 695
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	65, 523
BaeGI	GKGCMC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	26, 204, 682
BccI	CCATC	1 cut(s)	693
BciT130I	CCWGG	2 cut(s)	90, 406
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	72, 541
BfaI	CTAG	1 cut(s)	718
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	105
BisI	GCNGC	3 cut(s)	15, 218, 696
BlsI	GCNGC	3 cut(s)	16, 219, 697
Bme1390I	CCNGG	3 cut(s)	90, 312, 406
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	3 cut(s)	90, 312, 406
BmsI	GCATC	2 cut(s)	492, 663
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	29, 450
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	90, 406
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	5 cut(s)	245, 275, 507, 553, 685
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	26, 204, 682
BshFI	GGCC	2 cut(s)	146, 294
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	72, 541
BsmBI	CGTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	326, 383
BsnI	GGCC	2 cut(s)	146, 294
Bsp1286I	GDGCHC	2 cut(s)	45, 211
Bsp143I	GATC	5 cut(s)	376, 472, 514, 577, 609
BspANI	GGCC	2 cut(s)	146, 294
BspCNI	CTCAG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	467, 509, 572
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	5 cut(s)	376, 472, 514, 577, 609
Bst2UI	CCWGG	2 cut(s)	90, 406
Bst4CI	ACNGT	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	35, 282, 522
BstF5I	GGATG	5 cut(s)	245, 275, 507, 553, 685
BstKTI	GATC	5 cut(s)	379, 475, 517, 580, 612
BstMAI	GTCTC	2 cut(s)	72, 541
BstMBI	GATC	5 cut(s)	376, 472, 514, 577, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 502
BstNI	CCWGG	2 cut(s)	90, 406
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	3 cut(s)	88, 310, 404
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	26, 204, 682
BsuRI	GGCC	2 cut(s)	146, 294
BtsCI	GGATG	5 cut(s)	245, 275, 507, 553, 685
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	4 cut(s)	175, 368, 562, 602
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	35, 282, 522
DpnI	GATC	5 cut(s)	378, 474, 516, 579, 611
DpnII	GATC	5 cut(s)	376, 472, 514, 577, 609
EaeI	YGGCCR	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	88, 404
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	4 cut(s)	178, 371, 565, 605
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	4 cut(s)	174, 367, 561, 601
FauNDI	CATATG	1 cut(s)	645
Fnu4HI	GCNGC	3 cut(s)	15, 218, 696
FokI	GGATG	5 cut(s)	232, 282, 514, 540, 672
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	15, 218, 696
FspBI	CTAG	1 cut(s)	718
GluI	GCNGC	3 cut(s)	15, 218, 696
HaeIII	GGCC	2 cut(s)	146, 294
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	4 cut(s)	178, 371, 565, 605
HinfI	GANTC	3 cut(s)	286, 528, 649
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	2 cut(s)	65, 523
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	399, 541, 609
Hpy188III	TCNNGA	3 cut(s)	175, 653, 689
Hpy8I	GTNNAC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4V	TGCA	3 cut(s)	14, 209, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 502
HpyF3I	CTNAG	3 cut(s)	35, 282, 522
Hsp92II	CATG	4 cut(s)	178, 371, 565, 605
Kzo9I	GATC	5 cut(s)	376, 472, 514, 577, 609
Lsp1109I	GCAGC	3 cut(s)	26, 204, 682
LweI	GCATC	2 cut(s)	492, 663
MaeI	CTAG	1 cut(s)	718
MaeIII	GTNAC	2 cut(s)	190, 230
MalI	GATC	5 cut(s)	378, 474, 516, 579, 611
MboI	GATC	5 cut(s)	376, 472, 514, 577, 609
MboII	GAAGA	3 cut(s)	44, 62, 693
MhlI	GDGCHC	2 cut(s)	45, 211
MluCI	AATT	2 cut(s)	235, 342
MmeI	TCCRAC	2 cut(s)	542, 574
MnlI	CCTC	6 cut(s)	28, 152, 335, 474, 603, 626
MseI	TTAA	1 cut(s)	122
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	3 cut(s)	90, 312, 406
Mva1269I	GAATGC	2 cut(s)	326, 383
MvaI	CCWGG	2 cut(s)	90, 406
MwoI	GCNNNNNNNGC	2 cut(s)	40, 502
NciI	CCSGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	645
NdeII	GATC	5 cut(s)	376, 472, 514, 577, 609
NlaIII	CATG	4 cut(s)	178, 371, 565, 605
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	190, 230
NspI	RCATGY	1 cut(s)	565
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PctI	GAATGC	2 cut(s)	326, 383
PfeI	GAWTC	3 cut(s)	286, 528, 649
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	16, 219, 697
PscI	ACATGT	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	88, 404
PspGI	CCWGG	2 cut(s)	88, 404
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	695
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	3 cut(s)	15, 218, 696
Sau3AI	GATC	5 cut(s)	376, 472, 514, 577, 609
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	90, 312, 406
SduI	GDGCHC	2 cut(s)	45, 211
SetI	ASST	7 cut(s)	99, 163, 219, 376, 618, 697, 719
SfaNI	GCATC	2 cut(s)	492, 663
SfcI	CTRYAG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	44, 465
SmoI	CTYRAG	2 cut(s)	44, 465
Sse9I	AATT	2 cut(s)	235, 342
SspMI	CTAG	1 cut(s)	718
StyD4I	CCNGG	3 cut(s)	88, 310, 404
TaaI	ACNGT	1 cut(s)	535
TaqI	TCGA	1 cut(s)	618
TasI	AATT	2 cut(s)	235, 342
TfiI	GAWTC	3 cut(s)	286, 528, 649
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	190, 230
TseI	GCWGC	3 cut(s)	14, 217, 695
Tsp45I	GTSAC	2 cut(s)	190, 230
TspDTI	ATGAA	6 cut(s)	44, 163, 376, 384, 403, 590
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	429
VneI	GTGCAC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	565
XspI	CTAG	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.