Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

11825576 .. 11828026

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016987

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGACGGGGATTTTGATTGTGCATGAAGAAAAACAAGAGGAGGAAAGAACACCGAAAGAGATCTTGAGCTGTCGTTTCTGTGCAGTTATATACGTTGTGAATTGTGCCTTGTGGATCTTTGCTGGTTTTAATGTTTGTTGCTACTTATTGAGGGAAATGGCAACTTTAGTTGAGCCTCCGAATGGAATCAGGCAACGGGGAAAGCAATATTACTCAATGTGGCAAACGTTGTTCGAGGTTGATTCCAAGTATGTTCCGATCAAACCCATAGGGAGAGGAGCATATGGTGTAGTCTGCTCGTCCATCAACAGGGAAACGAATGAGAAAGTTGCAATCAAGAAGATCAATAACGTGTTTGAGAACCGCATTGATGCATTGAGGACACTGAGGGAGTTGAAGCTACTTAGAAATATCCAGCACGAGAATGTGATTGCTTTGAAGGATGTTATGATGCCTATCCACAGGACAAGTTTCAAGGACGTGTATTTTGTGTACGAGCTCATGGATACTGATCTTCACCAAATTATAAAGTCTTCACAGCCACTTTCCACTGACCATTGCAAATACTTTCTATTTCAGCTGCTCAGGGGGCTCAAGTATCTTCATTCAGCAAACATTCTTCACCGAGACTTGAAGCCTGGGAACCTGCTCATCAATGCTAACTGCGACTTAAAGATATGTGATTTTGGGTTAGCCCGAACCAGCAGAGGTAATGACCAGTTCATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCAGAGCTGCTATTGTGCTGTGACAATTACGGAACATCCATTGACGTCTGGTCAGTAGGATGTATCTTTGCCGAGATTCTTGGCCGAAAGCCAATCTTTCCCGGAACTGAATGCCTCAACCAACTAAAACTAATTATCAATGTTCTTGGTAGCCAGCATGAACCTGATCTCGCATTCATTGACAATCAGAAAGCCAGGAAGTTCATCAAATCACTGCCCTATTCAAGGGGGACACATTTCTCCCGTCTATACCCTCAAGCCGATCCTTTGGCTATAGATTTGTTGCAAAGGATGCTTGTGTTTGATCCAACTAAGAGAATCACCGTCTCGGAAGCACTCCAACATCCTTACATGTCAGGGCTATATGATCCCAGAAGCAATCCTCTTGCTCATGTTCCGATCAACCTCGACATAGATGAGAGTTTAGGCGAACATATGATTCGGGAGATGATGTGGAATGAGATGCTTCACTACCATCCAGAAGCTGCTTCTTCCAACCCTTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

423

Amino Acids

48.75

Weight (kDa)

7.56

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 371	6e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	88 - 281	2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
AatII	GACGTC	1 cut(s)	807
Acc36I	ACCTGC	1 cut(s)	654
AciI	CCGC	1 cut(s)	364
AclI	AACGTT	1 cut(s)	227
AclWI	GGATC	4 cut(s)	122, 1016, 1058, 1121
AcoI	YGGCCR	1 cut(s)	841
AcyI	GRCGYC	1 cut(s)	804
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	3 cut(s)	182, 309, 984
AflIII	ACRYGT	3 cut(s)	351, 480, 1110
AgsI	TTSAA	5 cut(s)	397, 439, 475, 634, 984
AhdI	GACNNNNNGTC	1 cut(s)	808
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	637, 953
AluBI	AGCT	6 cut(s)	69, 400, 499, 580, 766, 1244
AluI	AGCT	6 cut(s)	69, 400, 499, 580, 766, 1244
Alw21I	GWGCWC	2 cut(s)	501, 760
Alw26I	GTCTC	2 cut(s)	621, 1090
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	4 cut(s)	122, 1016, 1058, 1121
AlwNI	CAGNNNCTG	1 cut(s)	1244
AoxI	GGCC	1 cut(s)	841
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	3 cut(s)	580, 766, 1244
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 470, 502
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	3 cut(s)	509, 614, 1072
BaeGI	GKGCMC	1 cut(s)	760
BanII	GRGCYC	2 cut(s)	501, 594
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	501, 760
BbvI	GCAGC	3 cut(s)	567, 753, 1231
BccI	CCATC	2 cut(s)	311, 1242
BciT130I	CCWGG	2 cut(s)	639, 955
BciVI	GTATCC	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	621, 1090
BfaI	CTAG	1 cut(s)	1267
BfmI	CTRYAG	1 cut(s)	1032
BfuAI	ACCTGC	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	3 cut(s)	581, 767, 1245
BlsI	GCNGC	3 cut(s)	582, 768, 1246
Bme1390I	CCNGG	3 cut(s)	639, 861, 955
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmgBI	CACGTC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	644
BmrFI	CCNGG	3 cut(s)	639, 861, 955
BmsI	GCATC	4 cut(s)	361, 441, 1041, 1212
BpiI	GAAGAC	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	3 cut(s)	85, 578, 999
BpuMI	CCSGG	1 cut(s)	861
BsaBI	GATNNNNATC	2 cut(s)	455, 510
BsaHI	GRCGYC	1 cut(s)	804
BsaJI	CCNNGG	1 cut(s)	638
BsaXI	ACNNNNNCTCC	2 cut(s)	1196, 1226
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 309, 984
Bse1I	ACTGG	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	556
Bse8I	GATNNNNATC	2 cut(s)	455, 510
BseBI	CCWGG	2 cut(s)	639, 955
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	6 cut(s)	448, 794, 824, 1056, 1102, 1234
BseJI	GATNNNNATC	2 cut(s)	455, 510
BseLI	CCNNNNNNNGG	3 cut(s)	182, 309, 984
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	377, 598
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	2 cut(s)	53, 291
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	567, 753, 1231
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	843
BsiHKAI	GWGCWC	2 cut(s)	501, 760
BsiSI	CCGG	1 cut(s)	861
BslFI	GGGAC	1 cut(s)	1003
BslI	CCNNNNNNNGG	3 cut(s)	182, 309, 984
BsmAI	GTCTC	2 cut(s)	621, 1090
BsmBI	CGTCTC	1 cut(s)	1090
BsmFI	GGGAC	1 cut(s)	1003
BsmI	GAATGC	2 cut(s)	875, 932
BsnI	GGCC	1 cut(s)	843
Bsp1286I	GDGCHC	3 cut(s)	501, 594, 760
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	843
BspCNI	CTCAG	2 cut(s)	378, 597
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	1 cut(s)	644
BspMI	ACCTGC	1 cut(s)	654
BspPI	GGATC	4 cut(s)	122, 1016, 1058, 1121
BsrDI	GCAATG	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	638
BssNI	GRCGYC	1 cut(s)	804
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	639, 955
Bst4CI	ACNGT	1 cut(s)	1084
BstACI	GRCGYC	1 cut(s)	804
BstAPI	GCANNNNNTGC	1 cut(s)	1051
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	4 cut(s)	386, 404, 584, 1071
BstENI	CCTNNNNNAGG	1 cut(s)	982
BstF5I	GGATG	6 cut(s)	448, 794, 824, 1056, 1102, 1234
BstMAI	GTCTC	2 cut(s)	621, 1090
BstMWI	GCNNNNNNNGC	2 cut(s)	589, 1051
BstNI	CCWGG	2 cut(s)	639, 955
BstNSI	RCATGY	1 cut(s)	1114
BstSCI	CCNGG	3 cut(s)	637, 859, 953
BstSFI	CTRYAG	1 cut(s)	1032
BstSLI	GKGCMC	1 cut(s)	760
BstV1I	GCAGC	3 cut(s)	567, 753, 1231
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	2 cut(s)	60, 114
BstYI	RGATCY	2 cut(s)	60, 114
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	843
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	6 cut(s)	448, 794, 824, 1056, 1102, 1234
BtsI	GCAGTG	1 cut(s)	971
BtsIMutI	CAGTG	3 cut(s)	383, 549, 971
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	1 cut(s)	914
CaiI	CAGNNNCTG	1 cut(s)	1244
CciI	TCATGA	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	6 cut(s)	23, 502, 724, 917, 1111, 1151
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	4 cut(s)	386, 404, 584, 1071
DriI	GACNNNNNGTC	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	841
Eam1105I	GACNNNNNGTC	1 cut(s)	808
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	501, 594
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	982
EcoRII	CCWGG	2 cut(s)	637, 953
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	501, 594
Esp3I	CGTCTC	1 cut(s)	1090
FaeI	CATG	6 cut(s)	26, 505, 727, 920, 1114, 1154
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	1 cut(s)	1003
FatI	CATG	6 cut(s)	22, 501, 723, 916, 1110, 1150
FauNDI	CATATG	2 cut(s)	283, 1194
Fnu4HI	GCNGC	3 cut(s)	581, 767, 1245
FokI	GGATG	6 cut(s)	455, 781, 831, 1063, 1089, 1221
FriOI	GRGCYC	2 cut(s)	501, 594
Fsp4HI	GCNGC	3 cut(s)	581, 767, 1245
FspBI	CTAG	1 cut(s)	1267
GluI	GCNGC	3 cut(s)	581, 767, 1245
HaeIII	GGCC	1 cut(s)	843
HapII	CCGG	1 cut(s)	861
Hin1I	GRCGYC	1 cut(s)	804
Hin1II	CATG	6 cut(s)	26, 505, 727, 920, 1114, 1154
HinfI	GANTC	5 cut(s)	186, 242, 835, 1077, 1198
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	3 cut(s)	509, 614, 1072
Hpy166II	GTNNAC	2 cut(s)	493, 758
Hpy188I	TCNGA	5 cut(s)	180, 258, 948, 1090, 1158
Hpy188III	TCNNGA	5 cut(s)	64, 337, 724, 1202, 1238
Hpy8I	GTNNAC	2 cut(s)	493, 758
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	1084
HpyCH4IV	ACGT	5 cut(s)	93, 227, 351, 480, 804
HpyCH4V	TGCA	7 cut(s)	22, 83, 332, 374, 561, 758, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	589, 1051
HpyF3I	CTNAG	4 cut(s)	386, 404, 584, 1071
HpySE526I	ACGT	5 cut(s)	93, 227, 351, 480, 804
Hsp92I	GRCGYC	1 cut(s)	804
Hsp92II	CATG	6 cut(s)	26, 505, 727, 920, 1114, 1154
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	3 cut(s)	567, 753, 1231
LweI	GCATC	4 cut(s)	361, 441, 1041, 1212
MaeI	CTAG	1 cut(s)	1267
MaeII	ACGT	5 cut(s)	93, 227, 351, 480, 804
MaeIII	GTNAC	2 cut(s)	739, 779
MboII	GAAGA	7 cut(s)	38, 352, 506, 525, 593, 611, 1242
MflI	RGATCY	2 cut(s)	60, 114
MhlI	GDGCHC	3 cut(s)	501, 594, 760
MluCI	AATT	4 cut(s)	100, 522, 784, 891
MmeI	TCCRAC	2 cut(s)	1091, 1123
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	2 cut(s)	129, 671
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	3 cut(s)	639, 861, 955
Mva1269I	GAATGC	2 cut(s)	875, 932
MvaI	CCWGG	2 cut(s)	639, 955
MwoI	GCNNNNNNNGC	2 cut(s)	589, 1051
NciI	CCSGG	1 cut(s)	861
NdeI	CATATG	2 cut(s)	283, 1194
NlaIII	CATG	6 cut(s)	26, 505, 727, 920, 1114, 1154
NlaIV	GGNNCC	1 cut(s)	644
NmeAIII	GCCGAG	1 cut(s)	856
NmuCI	GTSAC	2 cut(s)	739, 779
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	1114
PagI	TCATGA	1 cut(s)	723
PciI	ACATGT	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	751
PctI	GAATGC	2 cut(s)	875, 932
PfeI	GAWTC	5 cut(s)	186, 242, 835, 1077, 1198
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	3 cut(s)	582, 768, 1246
PscI	ACATGT	1 cut(s)	1110
PsiI	TTATAA	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	501
Psp1406I	AACGTT	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	637, 953
PspGI	CCWGG	2 cut(s)	637, 953
PspN4I	GGNNCC	1 cut(s)	644
PstNI	CAGNNNCTG	1 cut(s)	1244
PsuI	RGATCY	2 cut(s)	60, 114
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	129, 671
SatI	GCNGC	3 cut(s)	581, 767, 1245
ScrFI	CCNGG	3 cut(s)	639, 861, 955
SduI	GDGCHC	3 cut(s)	501, 594, 760
SfaNI	GCATC	4 cut(s)	361, 441, 1041, 1212
SfcI	CTRYAG	1 cut(s)	1032
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	64, 593, 1014
SmoI	CTYRAG	3 cut(s)	64, 593, 1014
Sse9I	AATT	4 cut(s)	100, 522, 784, 891
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	1 cut(s)	1267
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	637, 859, 953
TaaI	ACNGT	1 cut(s)	1084
TaiI	ACGT	5 cut(s)	96, 230, 354, 483, 807
TaqI	TCGA	2 cut(s)	234, 1167
TasI	AATT	4 cut(s)	100, 522, 784, 891
TfiI	GAWTC	5 cut(s)	186, 242, 835, 1077, 1198
Tru1I	TTAA	2 cut(s)	129, 671
Tru9I	TTAA	2 cut(s)	129, 671
TscAI	CASTG	3 cut(s)	390, 556, 978
TseFI	GTSAC	2 cut(s)	739, 779
TseI	GCWGC	3 cut(s)	580, 766, 1244
Tsp45I	GTSAC	2 cut(s)	739, 779
TspDTI	ATGAA	6 cut(s)	39, 593, 712, 925, 933, 952
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	3 cut(s)	390, 556, 978
VneI	GTGCAC	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	982
XceI	RCATGY	1 cut(s)	1114
XspI	CTAG	1 cut(s)	1267
ZraI	GACGTC	1 cut(s)	805
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.