Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

12193638 .. 12196847

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGTGATTTGCAGGGAAATGGCAACTTTAGTGGAGCCTCCGAATGGAATCAGGCAACGGGGGAAGCAATATTACTCAATGTGGCAAACGTTGTTCGAGGTTGATTCCAAGTATGTTCCGATCAAACCCATAGGGAGAGGAGCATATGGTGTTGTCTGCTCGTCCATCAACAGGGAAACGAATGAGAAAGTTGCAATCAAGAAGATCCATAACGTGTTTGAGAACCGCATTGATGCATTGAGGACACTGAGGGAGTTGAAGCTACTTAGAAATATCCAGCACGAGAATGTGATTGCTTTGAAGGATGTTATGATGCCTATCCACAGGACAAGTTTCAAGGACGTGTATTTTGTGTACGAGCTCATGGATACTGATCTTCACCAAATTATAAAGTCTTCACAGCCACTTTCCACTGACCATTGCAAATACTTTCTATTTCAGCTGCTTAGGGGGCTCAAGTATCTTCATTCAGCAAACATTCTTCACCGAGACTTGAAGCCTGGGAACCTGCTCATCAATGCTAACTGCGACTTAAAGATATGTGATTTTGGGTTGGCCCGAACCAGCAGAGGTAATGACCAGTTCATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCAGAGCTGCTATTGTGCTGTGACAATTACGGAACATCCATTGACGTCTGGTCAGTAGGATGTATCTTTGCTGAGATTCTTGGCCGAAAGCCAATCTTTCCCGGAACTGAATGCCTCAACCAACTAAAACTAATTATCAATGTTCTTGGTAGCCAGCATGAACCTGATCTCGCATTCATTGACAATCAGAAAGCCAGGAAGTTCATCAAATCACTGCCCTATTCAAGGGGGACACATTTCTCCCGTCTGTACCCTCAAGCCGATCCTTTGGCTATAGATTTGTTGCAAAGGATGCTTGTGTTTGATCCAACTAAGAGAATCACCGTCTCGGAAGCACTCCAACATCCTTACATGTCAGGGCTATATGATCCCAGAAGCAATCCTCTTGTTCATGTTCCGATCAACCTCGACATAGATGAGAGTTTAGGCGAACATATGATTCGGGAGATGATGTGGAACGAGATGCTTCACTACCATCCAGAAGCTGCTTCTTCCGACCCTTTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

376

Amino Acids

43.5

Weight (kDa)

8.02

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	39 - 325	8.6e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 235	2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AatII	GACGTC	1 cut(s)	669
Acc36I	ACCTGC	1 cut(s)	516
AciI	CCGC	1 cut(s)	226
AclI	AACGTT	1 cut(s)	89
AclWI	GGATC	4 cut(s)	199, 878, 920, 983
AcoI	YGGCCR	1 cut(s)	703
AcyI	GRCGYC	1 cut(s)	666
AfaI	GTAC	2 cut(s)	356, 872
AfiI	CCNNNNNNNGG	3 cut(s)	44, 171, 846
AflIII	ACRYGT	3 cut(s)	213, 342, 972
AgsI	TTSAA	5 cut(s)	259, 301, 337, 496, 846
AhdI	GACNNNNNGTC	1 cut(s)	670
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	499, 815
AluBI	AGCT	5 cut(s)	262, 361, 442, 628, 1106
AluI	AGCT	5 cut(s)	262, 361, 442, 628, 1106
Alw21I	GWGCWC	2 cut(s)	363, 622
Alw26I	GTCTC	2 cut(s)	483, 952
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	4 cut(s)	199, 878, 920, 983
AlwNI	CAGNNNCTG	1 cut(s)	1106
AoxI	GGCC	2 cut(s)	555, 703
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	3 cut(s)	442, 628, 1106
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	4 cut(s)	16, 371, 476, 934
BaeGI	GKGCMC	1 cut(s)	622
BanII	GRGCYC	2 cut(s)	363, 456
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	363, 622
BbvI	GCAGC	3 cut(s)	429, 615, 1093
BccI	CCATC	2 cut(s)	173, 1104
BciT130I	CCWGG	2 cut(s)	501, 817
BciVI	GTATCC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	483, 952
BfaI	CTAG	1 cut(s)	1129
BfmI	CTRYAG	1 cut(s)	894
BfuAI	ACCTGC	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	443, 629, 1107
BlsI	GCNGC	3 cut(s)	444, 630, 1108
Bme1390I	CCNGG	3 cut(s)	501, 723, 817
BmeRI	GACNNNNNGTC	1 cut(s)	670
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	36, 506
BmrFI	CCNGG	3 cut(s)	501, 723, 817
BmsI	GCATC	4 cut(s)	223, 303, 903, 1074
BpiI	GAAGAC	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	2 cut(s)	440, 861
BpuMI	CCSGG	1 cut(s)	723
BsaBI	GATNNNNATC	2 cut(s)	317, 372
BsaHI	GRCGYC	1 cut(s)	666
BsaJI	CCNNGG	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	1058, 1088
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 171, 846
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	2 cut(s)	317, 372
BseBI	CCWGG	2 cut(s)	501, 817
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	6 cut(s)	310, 656, 686, 918, 964, 1096
BseJI	GATNNNNATC	2 cut(s)	317, 372
BseLI	CCNNNNNNNGG	3 cut(s)	44, 171, 846
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	239, 684
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	3 cut(s)	429, 615, 1093
BshFI	GGCC	2 cut(s)	557, 705
BsiHKAI	GWGCWC	2 cut(s)	363, 622
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	865
BslI	CCNNNNNNNGG	3 cut(s)	44, 171, 846
BsmAI	GTCTC	2 cut(s)	483, 952
BsmBI	CGTCTC	1 cut(s)	952
BsmFI	GGGAC	1 cut(s)	865
BsmI	GAATGC	2 cut(s)	737, 794
BsnI	GGCC	2 cut(s)	557, 705
Bsp1286I	GDGCHC	3 cut(s)	363, 456, 622
Bsp143I	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	557, 705
BspCNI	CTCAG	2 cut(s)	240, 685
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	36, 506
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	4 cut(s)	199, 878, 920, 983
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
BssNI	GRCGYC	1 cut(s)	666
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	501, 817
Bst4CI	ACNGT	1 cut(s)	946
BstACI	GRCGYC	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	913
BstC8I	GCNNGC	1 cut(s)	776
BstDEI	CTNAG	5 cut(s)	248, 266, 446, 693, 933
BstENI	CCTNNNNNAGG	1 cut(s)	844
BstF5I	GGATG	6 cut(s)	310, 656, 686, 918, 964, 1096
BstKTI	GATC	8 cut(s)	123, 207, 376, 790, 886, 928, 991, 1023
BstMAI	GTCTC	2 cut(s)	483, 952
BstMBI	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 913
BstNI	CCWGG	2 cut(s)	501, 817
BstNSI	RCATGY	1 cut(s)	976
BstSCI	CCNGG	3 cut(s)	499, 721, 815
BstSFI	CTRYAG	1 cut(s)	894
BstSLI	GKGCMC	1 cut(s)	622
BstV1I	GCAGC	3 cut(s)	429, 615, 1093
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	557, 705
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	6 cut(s)	310, 656, 686, 918, 964, 1096
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	3 cut(s)	245, 411, 833
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	776
CaiI	CAGNNNCTG	1 cut(s)	1106
CciI	TCATGA	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	355, 871
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	5 cut(s)	364, 586, 779, 973, 1013
CviQI	GTAC	2 cut(s)	355, 871
DdeI	CTNAG	5 cut(s)	248, 266, 446, 693, 933
DpnI	GATC	8 cut(s)	122, 206, 375, 789, 885, 927, 990, 1022
DpnII	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
DriI	GACNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	703
Eam1105I	GACNNNNNGTC	1 cut(s)	670
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	363, 456
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	844
EcoRII	CCWGG	2 cut(s)	499, 815
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	2 cut(s)	363, 456
Esp3I	CGTCTC	1 cut(s)	952
FaeI	CATG	5 cut(s)	367, 589, 782, 976, 1016
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	865
FatI	CATG	5 cut(s)	363, 585, 778, 972, 1012
FauNDI	CATATG	2 cut(s)	145, 1056
Fnu4HI	GCNGC	3 cut(s)	443, 629, 1107
FokI	GGATG	6 cut(s)	317, 643, 693, 925, 951, 1083
FriOI	GRGCYC	2 cut(s)	363, 456
Fsp4HI	GCNGC	3 cut(s)	443, 629, 1107
FspBI	CTAG	1 cut(s)	1129
GluI	GCNGC	3 cut(s)	443, 629, 1107
HaeIII	GGCC	2 cut(s)	557, 705
HapII	CCGG	1 cut(s)	723
Hin1I	GRCGYC	1 cut(s)	666
Hin1II	CATG	5 cut(s)	367, 589, 782, 976, 1016
HinfI	GANTC	5 cut(s)	48, 104, 697, 939, 1060
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	4 cut(s)	16, 371, 476, 934
Hpy166II	GTNNAC	2 cut(s)	355, 620
Hpy188I	TCNGA	6 cut(s)	42, 120, 810, 952, 1020, 1117
Hpy188III	TCNNGA	4 cut(s)	199, 586, 1064, 1100
Hpy8I	GTNNAC	2 cut(s)	355, 620
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	946
HpyCH4IV	ACGT	4 cut(s)	89, 213, 342, 666
HpyCH4V	TGCA	6 cut(s)	12, 194, 236, 423, 620, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 913
HpyF3I	CTNAG	5 cut(s)	248, 266, 446, 693, 933
HpySE526I	ACGT	4 cut(s)	89, 213, 342, 666
Hsp92I	GRCGYC	1 cut(s)	666
Hsp92II	CATG	5 cut(s)	367, 589, 782, 976, 1016
Kzo9I	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
LmnI	GCTCC	2 cut(s)	34, 140
Lsp1109I	GCAGC	3 cut(s)	429, 615, 1093
LweI	GCATC	4 cut(s)	223, 303, 903, 1074
MaeI	CTAG	1 cut(s)	1129
MaeII	ACGT	4 cut(s)	89, 213, 342, 666
MaeIII	GTNAC	2 cut(s)	601, 641
MalI	GATC	8 cut(s)	122, 206, 375, 789, 885, 927, 990, 1022
MboI	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
MboII	GAAGA	6 cut(s)	214, 368, 387, 455, 473, 1104
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	3 cut(s)	363, 456, 622
MluCI	AATT	3 cut(s)	384, 646, 753
MmeI	TCCRAC	2 cut(s)	953, 985
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	3 cut(s)	501, 723, 817
Mva1269I	GAATGC	2 cut(s)	737, 794
MvaI	CCWGG	2 cut(s)	501, 817
MwoI	GCNNNNNNNGC	2 cut(s)	451, 913
NciI	CCSGG	1 cut(s)	723
NdeI	CATATG	2 cut(s)	145, 1056
NdeII	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
NlaIII	CATG	5 cut(s)	367, 589, 782, 976, 1016
NlaIV	GGNNCC	2 cut(s)	36, 506
NmuCI	GTSAC	2 cut(s)	601, 641
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	976
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	972
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	2 cut(s)	737, 794
PfeI	GAWTC	5 cut(s)	48, 104, 697, 939, 1060
PfoI	TCCNGGA	1 cut(s)	721
PkrI	GCNGC	3 cut(s)	444, 630, 1108
PscI	ACATGT	1 cut(s)	972
PsiI	TTATAA	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	499, 815
PspGI	CCWGG	2 cut(s)	499, 815
PspN4I	GGNNCC	2 cut(s)	36, 506
PspPI	GGNCC	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	1106
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	356, 872
RsaNI	GTAC	2 cut(s)	355, 871
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	533
SatI	GCNGC	3 cut(s)	443, 629, 1107
Sau3AI	GATC	8 cut(s)	120, 204, 373, 787, 883, 925, 988, 1020
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	3 cut(s)	501, 723, 817
SduI	GDGCHC	3 cut(s)	363, 456, 622
SfaNI	GCATC	4 cut(s)	223, 303, 903, 1074
SfcI	CTRYAG	1 cut(s)	894
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	455, 876
SmoI	CTYRAG	2 cut(s)	455, 876
Sse9I	AATT	3 cut(s)	384, 646, 753
SsiI	CCGC	1 cut(s)	226
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	1129
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	499, 721, 815
TaaI	ACNGT	1 cut(s)	946
TaiI	ACGT	4 cut(s)	92, 216, 345, 669
TaqI	TCGA	2 cut(s)	96, 1029
TasI	AATT	3 cut(s)	384, 646, 753
TfiI	GAWTC	5 cut(s)	48, 104, 697, 939, 1060
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TscAI	CASTG	3 cut(s)	252, 418, 840
TseFI	GTSAC	2 cut(s)	601, 641
TseI	GCWGC	3 cut(s)	442, 628, 1106
Tsp45I	GTSAC	2 cut(s)	601, 641
TspDTI	ATGAA	6 cut(s)	455, 574, 787, 795, 814, 1001
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	3 cut(s)	252, 418, 840
VneI	GTGCAC	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	844
XceI	RCATGY	1 cut(s)	976
XspI	CTAG	1 cut(s)	1129
ZraI	GACGTC	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.