Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

12721639 .. 12724825

Gene Structure 3187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCAGAGCTGCTACTGTGCTGTGACAATTACGGAACATCCATTGACGTCTGGTCGGTAGGATGTATCTTTGCTGAGATTCTTGGCCGAAAGCCAATCTTTCCCGGAACTGAATGCCTCAACCAACTAAAACTAATTATCAATGTTCTTGGTAGCCAGCATGAACCTGATCTCGCATTCATTGACAATCAGAAAGCCAGGAAGTTCATCAAGTCACTGCCCTATTCAAGGGGGACACATTTCTCCCGTCTGTACCCTCAAGCCGATCCTTTGGCTATAGATTTGTTGCGAAGGATGCTTGTGTTTGATCCAACTAAGAGAATCACCGTCTCGGAAGCACTCCAACATCCTTACATGTCAGGGCTATATGATCCCAGAAGCAATCCTCTTGTTCATGTTCCGATCAACCTCGACATAGATGAGAGTTTAGGCGAACATATGATTCGGGAGATGATGTGGAACGAGATGCTTCACTACCATCCAGAAGCTGCTTCTTCCGACCCTTTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

181

Amino Acids

20.86

Weight (kDa)

5.77

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 130	1.5e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AclWI	GGATC	3 cut(s)	293, 335, 398
AcoI	YGGCCR	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	261
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	1 cut(s)	261
AhdI	GACNNNNNGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	2 cut(s)	43, 521
AluI	AGCT	2 cut(s)	43, 521
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	367
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	3 cut(s)	293, 335, 398
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	118
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	43, 521
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	30, 508
BccI	CCATC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	544
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	44, 522
BlsI	GCNGC	2 cut(s)	45, 523
Bme1390I	CCNGG	2 cut(s)	138, 232
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	138, 232
BmsI	GCATC	2 cut(s)	318, 489
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	232
BseGI	GGATG	5 cut(s)	71, 101, 333, 379, 511
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	30, 508
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	2 cut(s)	152, 209
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	5 cut(s)	202, 298, 340, 403, 435
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	100
BspPI	GGATC	3 cut(s)	293, 335, 398
BssMI	GATC	5 cut(s)	202, 298, 340, 403, 435
BssNI	GRCGYC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	51, 361
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	108, 348
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	5 cut(s)	71, 101, 333, 379, 511
BstKTI	GATC	5 cut(s)	205, 301, 343, 406, 438
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	5 cut(s)	202, 298, 340, 403, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	136, 230
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	30, 508
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	71, 101, 333, 379, 511
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	3 cut(s)	194, 388, 428
CviJI	RGCY	9 cut(s)	43, 120, 127, 189, 230, 296, 308, 397, 521
CviKI_1	RGCY	9 cut(s)	43, 120, 127, 189, 230, 296, 308, 397, 521
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	108, 348
DpnI	GATC	5 cut(s)	204, 300, 342, 405, 437
DpnII	GATC	5 cut(s)	202, 298, 340, 403, 435
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	118
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	3 cut(s)	197, 391, 431
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	193, 387, 427
FauNDI	CATATG	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	44, 522
FokI	GGATG	5 cut(s)	58, 108, 340, 366, 498
Fsp4HI	GCNGC	2 cut(s)	44, 522
FspBI	CTAG	1 cut(s)	544
GluI	GCNGC	2 cut(s)	44, 522
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	197, 391, 431
HinfI	GANTC	3 cut(s)	112, 354, 475
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	4 cut(s)	225, 367, 435, 532
Hpy188III	TCNNGA	2 cut(s)	479, 515
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	2 cut(s)	51, 361
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	108, 348
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	197, 391, 431
Kzo9I	GATC	5 cut(s)	202, 298, 340, 403, 435
Lsp1109I	GCAGC	2 cut(s)	30, 508
LweI	GCATC	2 cut(s)	318, 489
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	16, 56, 246
MalI	GATC	5 cut(s)	204, 300, 342, 405, 437
MboI	GATC	5 cut(s)	202, 298, 340, 403, 435
MboII	GAAGA	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	61, 168
MmeI	TCCRAC	2 cut(s)	368, 400
MnlI	CCTC	4 cut(s)	161, 300, 429, 452
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	138, 232
Mva1269I	GAATGC	2 cut(s)	152, 209
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	328
NciI	CCSGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	471
NdeII	GATC	5 cut(s)	202, 298, 340, 403, 435
NlaIII	CATG	3 cut(s)	197, 391, 431
NmuCI	GTSAC	3 cut(s)	16, 56, 246
NspI	RCATGY	1 cut(s)	391
PciI	ACATGT	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	2 cut(s)	152, 209
PfeI	GAWTC	3 cut(s)	112, 354, 475
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	45, 523
PscI	ACATGT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SatI	GCNGC	2 cut(s)	44, 522
Sau3AI	GATC	5 cut(s)	202, 298, 340, 403, 435
ScrFI	CCNGG	2 cut(s)	138, 232
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	45, 84, 202, 444, 523, 545
SfaNI	GCATC	2 cut(s)	318, 489
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	61, 168
SspMI	CTAG	1 cut(s)	544
StyD4I	CCNGG	2 cut(s)	136, 230
TaaI	ACNGT	2 cut(s)	51, 361
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	61, 168
TfiI	GAWTC	3 cut(s)	112, 354, 475
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	3 cut(s)	16, 56, 246
TseI	GCWGC	2 cut(s)	43, 521
Tsp45I	GTSAC	3 cut(s)	16, 56, 246
TspDTI	ATGAA	4 cut(s)	202, 210, 229, 416
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	259
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	544
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.