Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011806

Physical Location & Seq

Genomic Coordinates Reverse (-)

11704459 .. 11707099

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1140700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGGCAGACATTGTTTGAGGTTGACATCAAGTACGTACCAATCAAACCCATAGGGAGAGGGGCATATGGTGTAGTGTGCTCGTCAATCAATAGGGAAACGAATGAGAAAGTTGCAATCAAGAAGATCAATAATGTGTTTGAGAACCGCATTGATGCGTTGAGGACTCTGAGGGAGTTGAAGCTTCTTAAACATATCCGGCACGAGAATGTGATTGCTCTGAAGGATGTTATGATGCCTATCCACAGGACAAGCTTCAAGGACGTGTATTTCGTTTATGAGCTCATGGATACGGATCTTCATCAAATTATAAAGTCCTCACAACCACTTTCCAGTGACCATTGCAAATACTTTCTGTTTCAGTTACTTCGAGGGCTCAAGTATCTTCATTCAGCAAACATCCTTCACCGGGACTTGAAGCCTGGGAACCTGCTCATCAATGCTAACTGCGACTTGAAAATATGTGACTTTGGGTTGGCTCGAACCAGCGGAGGTAGTGGCCAGTTCATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCGGAGCTGCTATTGTGCTGTGACAATTATGGAACATCCATTGACGTCTGGTCCGTAGGATGCATCTTTGCTGAAATTCTTGGCCGGAAGCCAATCTTCCCTGGAACTGAATGCCTCAACCAACTAAAACTAATTATCAATGTTCTTGGTAGCCAGCAGGAACCTGACCTTGCATTCATTGACAACCCAAAAGCCAGGAAGTACATCAAATCATTGCCCTATTCTAGAGGGACACATTTGTCCCGTTTATACCCTCAAGCTGATCCTTTAGCTATAGACTTGTTGCAAAGGATGCTTGTGTTTGATCCAACTAAGAGAATCTCCGTCACAGAAGCACTCCAACACCCTTACATGTCAGGGCTATACGATCCGAGATCCAATCCTCTTGCCCAGGTTCCCATCAGTCTCGACATAGATGAGAATATGGAGGAACCAATGATTAGGGAGATGATGTGGAACGAGATGCTTCACTACCATCCAGAAGCTGCTCAGATGCTTCACTATTATCCAGAAGCGTCTTTTGTGCATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

359

Amino Acids

41.3

Weight (kDa)

7.2

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 299	6.2e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	16 - 209	1.1e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18170 AT4G36450
fragaria_vesca	FvH4_1g12630 FvH4_1g12630 FvH4_1g12630
malus_domestica	MD02G1140700.v1.1 MD15G1253700.v1.1
prunus_persica	Prupe.7G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100581
rosa_laevigata	RLG00000016987
rosa_multiflora	Rmu_sc0000528.1_g000005 Rmu_sc0019884.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142110
rosa_rugosa	Rorug02G0089700
rosa_samantha	Rh2AG138800 Rh2BG142200 Rh2CG144500 Rh2DG143900
rosa_wichuraiana	Rw2G010880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AasI	GACNNNNNNGTC	1 cut(s)	781
AatII	GACGTC	1 cut(s)	591
Acc36I	ACCTGC	1 cut(s)	438
AciI	CCGC	2 cut(s)	148, 489
AclWI	GGATC	5 cut(s)	303, 800, 842, 905, 912
AcoI	YGGCCR	2 cut(s)	499, 625
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	3 cut(s)	35, 39, 746
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflIII	ACRYGT	2 cut(s)	264, 894
AgsI	TTSAA	4 cut(s)	181, 259, 418, 457
AhdI	GACNNNNNGTC	1 cut(s)	592
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	4 cut(s)	421, 643, 737, 933
AluBI	AGCT	7 cut(s)	184, 255, 283, 550, 803, 815, 1028
AluI	AGCT	7 cut(s)	184, 255, 283, 550, 803, 815, 1028
Alw21I	GWGCWC	3 cut(s)	83, 285, 544
Alw26I	GTCTC	1 cut(s)	953
Alw44I	GTGCAC	1 cut(s)	540
AlwI	GGATC	5 cut(s)	303, 800, 842, 905, 912
AlwNI	CAGNNNCTG	1 cut(s)	1028
AoxI	GGCC	2 cut(s)	499, 625
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	2 cut(s)	550, 1028
ApoI	RAATTY	1 cut(s)	618
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	2 cut(s)	285, 378
BauI	CACGAG	1 cut(s)	203
Bbv12I	GWGCWC	3 cut(s)	83, 285, 544
BbvI	GCAGC	2 cut(s)	537, 1015
BccI	CCATC	2 cut(s)	950, 1026
BciT130I	CCWGG	4 cut(s)	423, 645, 739, 935
BciVI	GTATCC	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	953
BfaI	CTAG	2 cut(s)	768, 1075
BfmI	CTRYAG	1 cut(s)	816
BfuAI	ACCTGC	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	551, 1029
BlsI	GCNGC	2 cut(s)	552, 1030
Bme1390I	CCNGG	5 cut(s)	410, 423, 645, 739, 935
Bme18I	GGWCC	1 cut(s)	594
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	4 cut(s)	428, 705, 939, 975
BmrFI	CCNGG	5 cut(s)	410, 423, 645, 739, 935
BmsI	GCATC	7 cut(s)	145, 225, 593, 615, 825, 996, 1026
BpuEI	CTTGAG	2 cut(s)	362, 783
BpuMI	CCSGG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	37
BsaBI	GATNNNNATC	3 cut(s)	239, 294, 300
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	3 cut(s)	422, 643, 933
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	980, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	333, 502
Bse3DI	GCAATG	2 cut(s)	340, 755
Bse8I	GATNNNNATC	3 cut(s)	239, 294, 300
BseBI	CCWGG	4 cut(s)	423, 645, 739, 935
BseDI	CCNNGG	3 cut(s)	422, 643, 933
BseGI	GGATG	6 cut(s)	232, 399, 578, 608, 840, 1018
BseJI	GATNNNNATC	3 cut(s)	239, 294, 300
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	2 cut(s)	340, 755
BseMII	CTCAG	2 cut(s)	161, 1046
BseNI	ACTGG	2 cut(s)	333, 502
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	537, 1015
BshFI	GGCC	2 cut(s)	501, 627
BsiHKAI	GWGCWC	3 cut(s)	83, 285, 544
BsiSI	CCGG	4 cut(s)	199, 409, 545, 628
BslFI	GGGAC	3 cut(s)	425, 769, 787
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	953
BsmFI	GGGAC	3 cut(s)	425, 769, 787
BsmI	GAATGC	2 cut(s)	659, 716
BsnI	GGCC	2 cut(s)	501, 627
Bsp1286I	GDGCHC	4 cut(s)	83, 285, 378, 544
Bsp143I	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
BspACI	CCGC	2 cut(s)	148, 489
BspANI	GGCC	2 cut(s)	501, 627
BspCNI	CTCAG	2 cut(s)	162, 1045
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	4 cut(s)	428, 705, 939, 975
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	5 cut(s)	303, 800, 842, 905, 912
BsrDI	GCAATG	2 cut(s)	340, 755
BsrI	ACTGG	2 cut(s)	333, 502
BssECI	CCNNGG	3 cut(s)	422, 643, 933
BssMI	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
BssNI	GRCGYC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	4 cut(s)	423, 645, 739, 935
BstACI	GRCGYC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	698, 1071
BstDEI	CTNAG	3 cut(s)	170, 855, 1032
BstF5I	GGATG	6 cut(s)	232, 399, 578, 608, 840, 1018
BstKTI	GATC	6 cut(s)	129, 298, 808, 850, 913, 920
BstMAI	GTCTC	1 cut(s)	953
BstMBI	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
BstMWI	GCNNNNNNNGC	1 cut(s)	835
BstNI	CCWGG	4 cut(s)	423, 645, 739, 935
BstNSI	RCATGY	2 cut(s)	898, 1073
BstSCI	CCNGG	5 cut(s)	408, 421, 643, 737, 933
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	544
BstSNI	TACGTA	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	537, 1015
BstX2I	RGATCY	2 cut(s)	295, 917
BstYI	RGATCY	2 cut(s)	295, 917
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	501, 627
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	6 cut(s)	232, 399, 578, 608, 840, 1018
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	698, 1071
CaiI	CAGNNNCTG	1 cut(s)	1028
CciI	TCATGA	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	594
CseI	GACGC	1 cut(s)	1047
Csp6I	GTAC	3 cut(s)	34, 38, 745
CviAII	CATG	4 cut(s)	286, 508, 895, 1070
CviQI	GTAC	3 cut(s)	34, 38, 745
DdeI	CTNAG	3 cut(s)	170, 855, 1032
DpnI	GATC	6 cut(s)	128, 297, 807, 849, 912, 919
DpnII	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
DrdI	GACNNNNNNGTC	1 cut(s)	781
DriI	GACNNNNNGTC	1 cut(s)	592
DseDI	GACNNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	2 cut(s)	499, 625
Eam1105I	GACNNNNNGTC	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	283
Eco105I	TACGTA	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	285, 378
Eco47I	GGWCC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	4 cut(s)	421, 643, 737, 933
EcoT22I	ATGCAT	1 cut(s)	608
EcoT38I	GRGCYC	2 cut(s)	285, 378
FaeI	CATG	4 cut(s)	289, 511, 898, 1073
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	3 cut(s)	425, 769, 787
FatI	CATG	4 cut(s)	285, 507, 894, 1069
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	551, 1029
FokI	GGATG	6 cut(s)	239, 386, 565, 615, 847, 1005
FriOI	GRGCYC	2 cut(s)	285, 378
Fsp4HI	GCNGC	2 cut(s)	551, 1029
FspBI	CTAG	2 cut(s)	768, 1075
GluI	GCNGC	2 cut(s)	551, 1029
HaeIII	GGCC	2 cut(s)	501, 627
HapII	CCGG	4 cut(s)	199, 409, 545, 628
HgaI	GACGC	1 cut(s)	1047
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	4 cut(s)	289, 511, 898, 1073
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	2 cut(s)	182, 253
HinfI	GANTC	2 cut(s)	166, 861
HpaII	CCGG	4 cut(s)	199, 409, 545, 628
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	25, 542
Hpy188I	TCNGA	4 cut(s)	171, 222, 915, 1035
Hpy188III	TCNNGA	6 cut(s)	121, 508, 768, 950, 1022, 1052
Hpy8I	GTNNAC	2 cut(s)	25, 542
HpyAV	CCTTC	2 cut(s)	217, 413
HpyCH4IV	ACGT	3 cut(s)	36, 264, 588
HpyCH4V	TGCA	7 cut(s)	116, 345, 542, 606, 716, 829, 1069
HpyF10VI	GCNNNNNNNGC	1 cut(s)	835
HpyF3I	CTNAG	3 cut(s)	170, 855, 1032
HpySE526I	ACGT	3 cut(s)	36, 264, 588
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	289, 511, 898, 1073
Kzo9I	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	2 cut(s)	537, 1015
LweI	GCATC	7 cut(s)	145, 225, 593, 615, 825, 996, 1026
MaeI	CTAG	2 cut(s)	768, 1075
MaeII	ACGT	3 cut(s)	36, 264, 588
MaeIII	GTNAC	6 cut(s)	335, 363, 464, 523, 563, 868
MalI	GATC	6 cut(s)	128, 297, 807, 849, 912, 919
MboI	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
MboII	GAAGA	4 cut(s)	136, 290, 377, 631
MflI	RGATCY	2 cut(s)	295, 917
MhlI	GDGCHC	4 cut(s)	83, 285, 378, 544
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	4 cut(s)	306, 568, 618, 675
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	875, 907
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	4 cut(s)	199, 409, 545, 628
MspR9I	CCNGG	5 cut(s)	410, 423, 645, 739, 935
Mva1269I	GAATGC	2 cut(s)	659, 716
MvaI	CCWGG	4 cut(s)	423, 645, 739, 935
MwoI	GCNNNNNNNGC	1 cut(s)	835
NciI	CCSGG	1 cut(s)	410
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
NlaIII	CATG	4 cut(s)	289, 511, 898, 1073
NlaIV	GGNNCC	4 cut(s)	428, 705, 939, 975
NmuCI	GTSAC	5 cut(s)	335, 464, 523, 563, 868
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	2 cut(s)	898, 1073
PaeI	GCATGC	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	507
PciI	ACATGT	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	3 cut(s)	270, 535, 594
PctI	GAATGC	2 cut(s)	659, 716
PfeI	GAWTC	1 cut(s)	861
PkrI	GCNGC	2 cut(s)	552, 1030
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	37
PscI	ACATGT	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	4 cut(s)	421, 643, 737, 933
PspGI	CCWGG	4 cut(s)	421, 643, 737, 933
PspN4I	GGNNCC	4 cut(s)	428, 705, 939, 975
PspPI	GGNCC	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	1028
PsuI	RGATCY	2 cut(s)	295, 917
RsaI	GTAC	3 cut(s)	35, 39, 746
RsaNI	GTAC	3 cut(s)	34, 38, 745
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	551, 1029
Sau3AI	GATC	6 cut(s)	126, 295, 805, 847, 910, 917
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	5 cut(s)	410, 423, 645, 739, 935
SduI	GDGCHC	4 cut(s)	83, 285, 378, 544
SfaNI	GCATC	7 cut(s)	145, 225, 593, 615, 825, 996, 1026
SfcI	CTRYAG	1 cut(s)	816
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	377, 798
SmoI	CTYRAG	2 cut(s)	377, 798
SnaBI	TACGTA	1 cut(s)	37
SphI	GCATGC	1 cut(s)	1073
Sse9I	AATT	4 cut(s)	306, 568, 618, 675
SsiI	CCGC	2 cut(s)	148, 489
SspMI	CTAG	2 cut(s)	768, 1075
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	5 cut(s)	408, 421, 643, 737, 933
TaiI	ACGT	3 cut(s)	39, 267, 591
TaqI	TCGA	3 cut(s)	370, 481, 951
TasI	AATT	4 cut(s)	306, 568, 618, 675
TatI	WGTACW	1 cut(s)	744
TfiI	GAWTC	1 cut(s)	861
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	5 cut(s)	335, 464, 523, 563, 868
TseI	GCWGC	2 cut(s)	550, 1028
Tsp45I	GTSAC	5 cut(s)	335, 464, 523, 563, 868
TspDTI	ATGAA	4 cut(s)	290, 377, 496, 709
TspGWI	ACGGA	3 cut(s)	308, 586, 856
TspRI	CASTG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	618
XbaI	TCTAGA	1 cut(s)	767
XceI	RCATGY	2 cut(s)	898, 1073
XspI	CTAG	2 cut(s)	768, 1075
ZraI	GACGTC	1 cut(s)	589
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.