AT2G18360

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011037
Physical Location & Seq
Reverse (-)
7976700 .. 7979430
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18360.2

Sequence Viewer

Length: 942 bp
ATGGTGAACTTTGTGGATTTACAAAAACCATTGTTGTACCGCCTCATGAAATTGGCCGGTGTCATTCCTTACACCGTAGAGCTTGAACCAGGGACAAAGATGAACTTCTGGATCCCAAAAGAAACCCTAAAAAAAACCAAAAAATCTGACAAAAACTTTGCCGTGGAACCCCAAAAACCTACGAAACCAGTCCTATTGTTCATCCATGGCTTTGCAGCCGAAGGGATCGTGACGTGGCAGTTCCAGGTCGGATCATTAGCCAAGAAGTACTCAGTCTATATACCAGACCTCCTCTTCTTTGGTGGGTCCTACTCCGACAACGCGGATCGATCACCAGCGTTTCAAGCCCACTGTTTAGTCAAGTCTCTTCGTATCCTCGGTATCGAAAAGTTTACTCTTGTAGGGTTTAGTTACGGTGGCATGGTTGCTTTCAAGATCGCCGAGGAGTACCCTGAGATGGTTCAAGCCATGGTGGTTTCAGGTTCGATACTCGCGATGACTGATACGATCAGTGAGTCTAATTTGAACCAGTTAGGATTTAAGTCGTCGGCGGATCTTTTGTTACCAACTTCGGTTAAAGGGCTCAAGACTCTCTTCACCCTTGCTGTTCATAAACCCATGTGGTTCCCGAAACGGCTCTTCAAGGATTTCATTGAGGTGATGATTACCAATAGGAAGGAAAGAGCAGAATTGTTAGAAGCTTTGGTCATCAGCAACAAAGATGTGACAATCCCTCGTTTTCAACAGAAAATACATCTTCTGTGGGGCGAAAGTGATCAAATTTTTAACCTTGAATTTGCCAAGAGCATGAAAGAGCAACTAGGCGAAAATGCAACAATGGAGAGTATAAAAAAAGCAGGTCACTTGGCACATTTGGAGAGACCTTGTGTCTATAACAGACGTCTCAAAAAGTTTCTTGCTTCAGTTTACTCCGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

313

Amino Acids

35.53

Weight (kDa)

9.37

Isoelectric Point (pI)

21.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 63 - 170 9.4e-19 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 65 - 220 2.7e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011037)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18360 AT2G18360 AT4G36610
fragaria_vesca FvH4_1g13190 FvH4_1g13200
malus_domestica MD02G1146700.v1.1 MD15G1260700.v1.1
prunus_persica Prupe.7G155500_v2.0.a1
pyrus_communis pycom02g11600 pycom15g22790
rosa_chinensis RchiOBHm_Chr2g0101411
rosa_laevigata RLG00000017076
rosa_multiflora Rmu_sc0006128.1_g000006
rosa_roxburghii Rroxscaffold_2G00141330
rosa_rugosa Rorug02G0098400
rosa_samantha Rh2AG146700 Rh2BG152100 Rh2CG152600 Rh2DG152200
rosa_wichuraiana Rw2G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 904
Acc36I ACCTGC 1 cut(s) 848
AccII CGCG 2 cut(s) 323, 494
AciI CCGC 3 cut(s) 40, 323, 551
AclWI GGATC 6 cut(s) 106, 119, 233, 259, 333, 561
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 780, 794
AcuI CTGAAG 1 cut(s) 906
AcyI GRCGYC 1 cut(s) 901
AfaI GTAC 3 cut(s) 38, 269, 449
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 8 cut(s) 86, 344, 433, 464, 526, 643, 743, 794
AhdI GACNNNNNGTC 1 cut(s) 887
AjiI CACGTC 1 cut(s) 234
AjnI CCWGG 2 cut(s) 88, 243
AluBI AGCT 2 cut(s) 82, 701
AluI AGCT 2 cut(s) 82, 701
Alw26I GTCTC 3 cut(s) 369, 874, 908
AlwI GGATC 6 cut(s) 106, 119, 233, 259, 333, 561
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 780, 794
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 4 cut(s) 16, 324, 589, 670
AvaII GGWCC 1 cut(s) 306
BamHI GGATCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 451
BceAI ACGGC 2 cut(s) 146, 650
BciT130I CCWGG 2 cut(s) 90, 245
BciVI GTATCC 1 cut(s) 383
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 369, 874, 908
BfaI CTAG 1 cut(s) 821
BfuAI ACCTGC 1 cut(s) 848
BfuI GTATCC 1 cut(s) 383
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 90, 245
Bme18I GGWCC 1 cut(s) 306
BmeRI GACNNNNNGTC 1 cut(s) 887
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 4 cut(s) 113, 168, 307, 626
BmrFI CCNGG 2 cut(s) 90, 245
BpuEI CTTGAG 1 cut(s) 569
Bsa29I ATCGAT 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 901
BsaI GGTCTC 1 cut(s) 874
BsaJI CCNNGG 6 cut(s) 89, 162, 205, 376, 441, 468
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 188, 529
BseBI CCWGG 2 cut(s) 90, 245
BseCI ATCGAT 1 cut(s) 328
BseDI CCNNGG 6 cut(s) 89, 162, 205, 376, 441, 468
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 285, 444
BseNI ACTGG 2 cut(s) 188, 529
BseRI GAGGAG 2 cut(s) 281, 458
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 323, 494
BshFI GGCC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 328
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 3 cut(s) 369, 874, 908
BsmBI CGTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
Bsp19I CCATGG 2 cut(s) 205, 468
Bsp68I TCGCGA 1 cut(s) 494
BspACI CCGC 3 cut(s) 40, 323, 551
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 284, 445
BspDI ATCGAT 1 cut(s) 328
BspFNI CGCG 2 cut(s) 323, 494
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 113, 168, 307, 626
BspMI ACCTGC 1 cut(s) 848
BspPI GGATC 6 cut(s) 106, 119, 233, 259, 333, 561
BspQI GCTCTTC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 188, 529
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 6 cut(s) 89, 162, 205, 376, 441, 468
BssMI GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
BssNI GRCGYC 1 cut(s) 901
BssT1I CCWWGG 2 cut(s) 205, 468
Bst2UI CCWGG 2 cut(s) 90, 245
Bst4CI ACNGT 3 cut(s) 76, 353, 416
Bst6I CTCTTC 4 cut(s) 299, 372, 599, 644
BstACI GRCGYC 1 cut(s) 901
BstDEI CTNAG 2 cut(s) 271, 453
BstDSI CCRYGG 3 cut(s) 162, 205, 468
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 2 cut(s) 323, 494
BstKTI GATC 9 cut(s) 114, 228, 254, 328, 332, 438, 510, 556, 778
BstMAI GTCTC 3 cut(s) 369, 874, 908
BstMBI GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 2 cut(s) 90, 245
BstSCI CCNGG 2 cut(s) 88, 243
BstUI CGCG 2 cut(s) 323, 494
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 111, 553
BstYI RGATCY 2 cut(s) 111, 553
Bsu15I ATCGAT 1 cut(s) 328
BsuI GTATCC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 56
BsuTUI ATCGAT 1 cut(s) 328
BtgI CCRYGG 3 cut(s) 162, 205, 468
BtgZI GCGATG 1 cut(s) 509
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 349, 517
BtuMI TCGCGA 1 cut(s) 494
BveI ACCTGC 1 cut(s) 848
CciI TCATGA 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 328
Csp6I GTAC 3 cut(s) 37, 268, 448
CviAII CATG 6 cut(s) 46, 206, 421, 469, 619, 808
CviQI GTAC 3 cut(s) 37, 268, 448
DdeI CTNAG 2 cut(s) 271, 453
DpnI GATC 9 cut(s) 113, 227, 253, 327, 331, 437, 509, 555, 777
DpnII GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
DriI GACNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 4 cut(s) 299, 372, 599, 644
Eam1105I GACNNNNNGTC 1 cut(s) 887
EarI CTCTTC 4 cut(s) 299, 372, 599, 644
EciI GGCGGA 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 205, 468
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 874
Eco47I GGWCC 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 906
EcoO109I RGGNCCY 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 88, 243
EcoT14I CCWWGG 2 cut(s) 205, 468
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 2 cut(s) 205, 468
Esp3I CGTCTC 1 cut(s) 908
FaeI CATG 6 cut(s) 49, 209, 424, 472, 622, 811
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 578, 610
FaqI GGGAC 1 cut(s) 106
FatI CATG 6 cut(s) 45, 205, 420, 468, 618, 807
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 821
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 901
Hin1II CATG 6 cut(s) 49, 209, 424, 472, 622, 811
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 2 cut(s) 515, 589
HpaII CCGG 1 cut(s) 57
HphI GGTGA 4 cut(s) 16, 324, 589, 670
Hpy166II GTNNAC 3 cut(s) 7, 393, 928
Hpy188I TCNGA 4 cut(s) 148, 251, 316, 934
Hpy188III TCNNGA 7 cut(s) 46, 109, 229, 433, 493, 586, 628
Hpy8I GTNNAC 3 cut(s) 7, 393, 928
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 2 cut(s) 215, 670
HpyCH4III ACNGT 3 cut(s) 76, 353, 416
HpyCH4IV ACGT 2 cut(s) 233, 901
HpyCH4V TGCA 2 cut(s) 215, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 271, 453
HpySE526I ACGT 2 cut(s) 233, 901
Hsp92I GRCGYC 1 cut(s) 901
Hsp92II CATG 6 cut(s) 49, 209, 424, 472, 622, 811
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
LguI GCTCTTC 1 cut(s) 644
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 821
MaeII ACGT 2 cut(s) 233, 901
MaeIII GTNAC 5 cut(s) 229, 410, 561, 724, 860
MalI GATC 9 cut(s) 113, 227, 253, 327, 331, 437, 509, 555, 777
MboI GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
MboII GAAGA 5 cut(s) 286, 359, 586, 631, 749
MflI RGATCY 2 cut(s) 111, 553
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 5 cut(s) 50, 520, 689, 780, 794
MlyI GAGTC 2 cut(s) 524, 583
MmeI TCCRAC 2 cut(s) 229, 339
MnlI CCTC 7 cut(s) 53, 299, 302, 386, 436, 649, 744
MseI TTAA 3 cut(s) 540, 576, 786
MslI CAYNNNNRTG 1 cut(s) 656
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 90, 245
MvaI CCWGG 2 cut(s) 90, 245
MvnI CGCG 2 cut(s) 323, 494
MwoI GCNNNNNNNGC 1 cut(s) 344
NcoI CCATGG 2 cut(s) 205, 468
NdeII GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
NlaIII CATG 6 cut(s) 49, 209, 424, 472, 622, 811
NlaIV GGNNCC 4 cut(s) 113, 168, 307, 626
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 3 cut(s) 229, 724, 860
NruI TCGCGA 1 cut(s) 494
PagI TCATGA 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 523, 583
PpsI GAGTC 2 cut(s) 523, 583
PpuMI RGGWCCY 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 88, 243
PspGI CCWGG 2 cut(s) 88, 243
PspN4I GGNNCC 4 cut(s) 113, 168, 307, 626
PspPI GGNCC 1 cut(s) 306
PspPPI RGGWCCY 1 cut(s) 306
PsuI RGATCY 2 cut(s) 111, 553
RruI TCGCGA 1 cut(s) 494
RsaI GTAC 3 cut(s) 38, 269, 449
RsaNI GTAC 3 cut(s) 37, 268, 448
RseI CAYNNNNRTG 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 3 cut(s) 540, 576, 786
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 9 cut(s) 111, 225, 251, 325, 329, 435, 507, 553, 775
Sau96I GGNCC 1 cut(s) 306
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 2 cut(s) 524, 583
ScrFI CCNGG 2 cut(s) 90, 245
SduI GDGCHC 1 cut(s) 585
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 5 cut(s) 50, 520, 689, 780, 794
SsiI CCGC 3 cut(s) 40, 323, 551
SspMI CTAG 1 cut(s) 821
StyD4I CCNGG 2 cut(s) 88, 243
StyI CCWWGG 2 cut(s) 205, 468
TaaI ACNGT 3 cut(s) 76, 353, 416
TaiI ACGT 2 cut(s) 236, 904
TaqI TCGA 3 cut(s) 328, 384, 485
TasI AATT 5 cut(s) 50, 520, 689, 780, 794
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 3 cut(s) 540, 576, 786
Tru9I TTAA 3 cut(s) 540, 576, 786
TscAI CASTG 2 cut(s) 356, 517
TseFI GTSAC 3 cut(s) 229, 724, 860
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 3 cut(s) 229, 724, 860
TspDTI ATGAA 6 cut(s) 62, 116, 190, 599, 640, 824
TspRI CASTG 2 cut(s) 356, 517
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 2 cut(s) 780, 794
XspI CTAG 1 cut(s) 821
ZraI GACGTC 1 cut(s) 902
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.