FvH4_1g13190

epoxide hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011037
Physical Location & Seq
Reverse (-)
7251266 .. 7254464
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13190.t1

Sequence Viewer

Length: 531 bp
ATGGTGGCGTTCAAGATGGCGGAGATGTATCCGGAGCTGGTGAGAGTCATGGTGGTTTCCGGGTCGATATTGGCGATGACGTGTTCGGTGAGAGATGATACTATGAAGAGGCTAGGGTTTGAGTCGTTGTCAGAGCTTTTGCTGCCGAGAACGGTGAAGGGGCTCGAGGCTCTGCTGTCGGTGGGGGCTCACATGAAGCTGTATTTTCCCGATCGGCTCCACAGAGACTTCCTTGAGGTGATGTTCACGAACAGGAAGGAAAGGGAAGAACTACTTGAAGCTTTAGTCATTGACACAAAGGATCCAAACATTCCCAAATTCCCACAGAGAATTCATCTATTATGGGGTGAAAATGATCAGATATTTAAGCAGGAGCTTGCTCACAAAATGAAAGAGCAACTAGGAGCAAATGCAACATTTAAAGGCATAAAGAAAGCAGGTCATCTGGTTCACCTTGAAAGACCTTGTGTTTACAACAGGTGTCTCAAGAGATTCCTAGCCTCCCTGAATGATGTTGGAGCTCAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

177

Amino Acids

20.2

Weight (kDa)

8.99

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011037)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18360 AT2G18360 AT4G36610
fragaria_vesca FvH4_1g13190 FvH4_1g13200
malus_domestica MD02G1146700.v1.1 MD15G1260700.v1.1
prunus_persica Prupe.7G155500_v2.0.a1
pyrus_communis pycom02g11600 pycom15g22790
rosa_chinensis RchiOBHm_Chr2g0101411
rosa_laevigata RLG00000017076
rosa_multiflora Rmu_sc0006128.1_g000006
rosa_roxburghii Rroxscaffold_2G00141330
rosa_rugosa Rorug02G0098400
rosa_samantha Rh2AG146700 Rh2BG152100 Rh2CG152600 Rh2DG152200
rosa_wichuraiana Rw2G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 296, 309
AcsI RAATTY 2 cut(s) 317, 330
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 3 cut(s) 13, 278, 458
AjiI CACGTC 1 cut(s) 81
AluBI AGCT 6 cut(s) 37, 136, 199, 281, 376, 521
AluI AGCT 6 cut(s) 37, 136, 199, 281, 376, 521
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 219, 488
AlwI GGATC 2 cut(s) 296, 309
Ama87I CYCGRG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 2 cut(s) 317, 330
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 6 cut(s) 52, 100, 166, 250, 359, 443
AvaI CYCGRG 1 cut(s) 164
BamHI GGATCC 1 cut(s) 301
BanII GRGCYC 3 cut(s) 165, 190, 523
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 10
BciVI GTATCC 1 cut(s) 39
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 219, 488
BfaI CTAG 3 cut(s) 113, 401, 497
BfuAI ACCTGC 1 cut(s) 428
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 218, 303
BmrFI CCNGG 1 cut(s) 61
BpuEI CTTGAG 2 cut(s) 254, 470
BpuMI CCSGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 31
BseXI GCAGC 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 32, 60
BsmAI GTCTC 2 cut(s) 219, 488
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 165, 190, 523
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 211, 301, 355
BspACI CCGC 1 cut(s) 20
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 218, 303
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 2 cut(s) 296, 309
BssMI GATC 3 cut(s) 211, 301, 355
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 378
BstKTI GATC 3 cut(s) 214, 304, 358
BstMAI GTCTC 2 cut(s) 219, 488
BstMBI GATC 3 cut(s) 211, 301, 355
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuI GTATCC 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 89
BtrI CACGTC 1 cut(s) 81
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 378
CviAII CATG 2 cut(s) 49, 193
DpnI GATC 3 cut(s) 213, 303, 357
DpnII GATC 3 cut(s) 211, 301, 355
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 3 cut(s) 165, 190, 523
Eco53kI GAGCTC 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 330
EcoT38I GRGCYC 3 cut(s) 165, 190, 523
FaeI CATG 2 cut(s) 52, 196
FaiI YATR 5 cut(s) 50, 104, 194, 343, 428
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 2 cut(s) 48, 192
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 143
FriOI GRGCYC 3 cut(s) 165, 190, 523
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 3 cut(s) 113, 401, 497
GluI GCNGC 1 cut(s) 143
HapII CCGG 2 cut(s) 32, 60
Hin1II CATG 2 cut(s) 52, 196
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 3 cut(s) 45, 122, 492
HpaII CCGG 2 cut(s) 32, 60
HphI GGTGA 6 cut(s) 52, 100, 166, 250, 359, 443
Hpy166II GTNNAC 3 cut(s) 246, 451, 472
Hpy188I TCNGA 2 cut(s) 133, 360
Hpy188III TCNNGA 5 cut(s) 13, 32, 209, 247, 487
Hpy8I GTNNAC 3 cut(s) 246, 451, 472
HpyAV CCTTC 2 cut(s) 151, 250
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 2 cut(s) 52, 196
Kpn2I TCCGGA 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 211, 301, 355
LmnI GCTCC 5 cut(s) 34, 222, 373, 404, 518
LpnPI CCDG 9 cut(s) 23, 45, 73, 238, 356, 423, 431, 463, 518
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 3 cut(s) 113, 401, 497
MaeII ACGT 1 cut(s) 80
MalI GATC 3 cut(s) 213, 303, 357
MboI GATC 3 cut(s) 211, 301, 355
MboII GAAGA 2 cut(s) 118, 278
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 3 cut(s) 165, 190, 523
MluCI AATT 2 cut(s) 317, 330
MlyI GAGTC 2 cut(s) 54, 131
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 4 cut(s) 102, 160, 229, 511
MroI TCCGGA 1 cut(s) 31
MseI TTAA 3 cut(s) 366, 420, 529
MspI CCGG 2 cut(s) 32, 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 61
NdeII GATC 3 cut(s) 211, 301, 355
NlaIII CATG 2 cut(s) 52, 196
NlaIV GGNNCC 2 cut(s) 218, 303
NmeAIII GCCGAG 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 1 cut(s) 144
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 2 cut(s) 53, 130
PpsI GAGTC 2 cut(s) 53, 130
Psp124BI GAGCTC 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 218, 303
PspXI VCTCGAGB 1 cut(s) 164
PsuI RGATCY 1 cut(s) 301
PvuI CGATCG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 3 cut(s) 366, 420, 529
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 3 cut(s) 211, 301, 355
SchI GAGTC 2 cut(s) 54, 131
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 3 cut(s) 165, 190, 523
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 3 cut(s) 164, 233, 485
SmoI CTYRAG 3 cut(s) 164, 233, 485
Sse9I AATT 2 cut(s) 317, 330
SsiI CCGC 1 cut(s) 20
SspMI CTAG 3 cut(s) 113, 401, 497
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 65, 165
TasI AATT 2 cut(s) 317, 330
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 3 cut(s) 366, 420, 529
Tru9I TTAA 3 cut(s) 366, 420, 529
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 119, 209, 323, 404
XapI RAATTY 2 cut(s) 317, 330
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 3 cut(s) 113, 401, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.