Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013371

Physical Location & Seq

Genomic Coordinates Reverse (-)

8049371 .. 8051316

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAATAACCAGAATGTAGATGATCATAATCTTCTACTCATTTCTCAATTGTACCCTAATGTCTATACTCCATTAGTACCACAACAAGGAGGAGAAGCAAAACCAACACGGCGGAGGAAAAGGAAGAGCAAGAGTGTTGTGGTGGCAGAGGAGGGTGAAAACGAAGGCAATGGGTGGTTTAGAAAGAGAAAATTGAGTGATGAGCAAGTAAGAATGTTGGAGATTAGCTTTGAAGACGATCATAAGCTTGAATCCGAGAGGAAAGATCGGCTTGCTTCTGAGTTAGGGCTTGATCCTCGTCAAGTCGCCGTCTGGTTCCAAAACCGCCGTGCACGGTGGAAGAACAAACGAGTCGAGGATGAATACACTAAACTCAAGAATGCATACGAAACCACCGTCGTTGAGAAATGTCGTCTTGATTCTGAGGTTATTCACCTAAAGGAACAACTTTACGAGGCTGAAAGAGAGATCCAACGGCTTGCAAAAAGAGTTGAAGGAACTTTAAGTAACAGTCCTATCTCATCCTCTGTGACCATTGAAGCCAATCATACGACACCGTTTTTTGGAGATTACGACATCGGATTTGACGGTGAGGCTGACGAGAACTTGCTCTACTCGCCAGATTACATTGATGGATTAGACTGGATGAGCCAATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

220

Amino Acids

25.7

Weight (kDa)

5.31

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	63 - 115	3.8e-17	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18550 AT4G36740 AT4G36740
fragaria_vesca	FvH4_1g13930 FvH4_1g13930
malus_domestica	MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica	Prupe.7G149700_v2.0.a1
pyrus_communis	pycom02g12010
rosa_chinensis	RchiOBHm_Chr2g0102221
rosa_laevigata	RLG00000017139
rosa_multiflora	Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii	Rroxscaffold_2G00140640
rosa_rugosa	Rorug02G0105900
rosa_samantha	Rh2AG153800 Rh2CG159400
rosa_wichuraiana	Rw2G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	112, 325
AclWI	GGATC	2 cut(s)	287, 463
AfaI	GTAC	2 cut(s)	53, 78
AfiI	CCNNNNNNNGG	2 cut(s)	86, 563
AgsI	TTSAA	4 cut(s)	233, 251, 494, 539
AluBI	AGCT	2 cut(s)	228, 247
AluI	AGCT	2 cut(s)	228, 247
Alw21I	GWGCWC	1 cut(s)	334
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	287, 463
ApaLI	GTGCAC	1 cut(s)	330
ArsI	GACNNNNNNTTYG	4 cut(s)	381, 413, 566, 598
AsuHPI	GGTGA	3 cut(s)	167, 425, 602
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	334
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	4 cut(s)	125, 293, 312, 491
BclI	TGATCA	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 563
Bse1I	ACTGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	27
BseGI	GGATG	3 cut(s)	364, 521, 651
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	86, 563
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	270, 414
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	2 cut(s)	105, 164
BseSI	GKGCMC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	86, 563
BsmI	GAATGC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	22, 238, 265, 292, 468
BspACI	CCGC	2 cut(s)	112, 325
BspCNI	CTCAG	2 cut(s)	271, 415
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	2 cut(s)	287, 463
BspQI	GCTCTTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	647
BssMI	GATC	5 cut(s)	22, 238, 265, 292, 468
Bst4CI	ACNGT	5 cut(s)	336, 397, 512, 558, 590
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	273, 480
BstDEI	CTNAG	2 cut(s)	279, 423
BstF5I	GGATG	3 cut(s)	364, 521, 651
BstKTI	GATC	5 cut(s)	25, 241, 268, 295, 471
BstMBI	GATC	5 cut(s)	22, 238, 265, 292, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	616
BstSLI	GKGCMC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	364, 521, 651
Cac8I	GCNNGC	2 cut(s)	273, 480
Csp6I	GTAC	2 cut(s)	52, 77
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviJI	RGCY	9 cut(s)	228, 247, 271, 289, 458, 478, 542, 596, 651
CviKI_1	RGCY	9 cut(s)	228, 247, 271, 289, 458, 478, 542, 596, 651
CviQI	GTAC	2 cut(s)	52, 77
DdeI	CTNAG	2 cut(s)	279, 423
DpnI	GATC	5 cut(s)	24, 240, 267, 294, 470
DpnII	GATC	5 cut(s)	22, 238, 265, 292, 468
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	385
FaiI	YATR	6 cut(s)	27, 66, 243, 385, 549, 659
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FbaI	TGATCA	1 cut(s)	22
FokI	GGATG	3 cut(s)	371, 508, 658
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	3 cut(s)	251, 351, 419
HphI	GGTGA	3 cut(s)	167, 425, 602
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	4 cut(s)	256, 280, 424, 581
Hpy188III	TCNNGA	2 cut(s)	376, 416
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	2 cut(s)	158, 488
HpyCH4III	ACNGT	5 cut(s)	336, 397, 512, 558, 590
HpyCH4V	TGCA	3 cut(s)	332, 383, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	616
HpyF3I	CTNAG	2 cut(s)	279, 423
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	22, 238, 265, 292, 468
LguI	GCTCTTC	1 cut(s)	119
LpnPI	CCDG	4 cut(s)	23, 298, 628, 633
MaeIII	GTNAC	2 cut(s)	506, 529
MalI	GATC	5 cut(s)	24, 240, 267, 294, 470
MboI	GATC	5 cut(s)	22, 238, 265, 292, 468
MboII	GAAGA	4 cut(s)	23, 136, 245, 352
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	3 cut(s)	47, 191, 653
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	198, 496
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	1 cut(s)	503
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	616
NdeII	GATC	5 cut(s)	22, 238, 265, 292, 468
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	251, 419
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	317
PsrI	GAACNNNNNNTAC	2 cut(s)	596, 628
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	2 cut(s)	53, 78
RsaNI	GTAC	2 cut(s)	52, 77
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	503
Sau3AI	GATC	5 cut(s)	22, 238, 265, 292, 468
SchI	GAGTC	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	4 cut(s)	230, 249, 429, 438
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	47, 191, 653
SsiI	CCGC	2 cut(s)	112, 325
TaaI	ACNGT	5 cut(s)	336, 397, 512, 558, 590
TaqI	TCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	47, 191, 653
TfiI	GAWTC	2 cut(s)	251, 419
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	17, 375
VneI	GTGCAC	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.