pycom02g12010

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013371
Physical Location & Seq
Reverse (-)
8574919 .. 8576807
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12010.1

Sequence Viewer

Length: 648 bp
ATGGCAACCAACAACCACCAAGTTGTTGAAGACGATCATCATATGCTACTCATCTCTCACTTGTACTCGGCCTCTGATGTCTACACTCAAATTGTACCCCCACAAGGAGCCTCAAAGCCGGCAAGGCGACGTCGTAAGAAGAGAAAAGGTGGAGAAGTTGGTGGTGTTGGGCTTAAGAAGAGGAAGCTCACGGCTGAACAAGTAAACCTTCTTGAGCTCAATTTTGGAAACGAACACAAACTGGAGTCTGAGAAGAAAGACAGGCTTGCTTCTGAACTGGGTCTTGATCCTCGTCAAGTTGCTGTTTGGTTCCAAAATCGAAGGGCTCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCAACCTTAAAGAAAGAACATGAAAACACTGTTGCTGAGAAATGTAGACTTGAGTCCGAGATGTCGAAGCTCAAGGATCAACTGAAGGAGGCTGAGAAGGAGATCCAACGGCTGTCGGAGCACGTTTATCATGGCGGCCCCAGCAACAGTCCGAGCTCCTCGCTCTCCATGGAAGCCATTGATCCTCCATTTTTAGGAGAATTTGGGGTGGAAGAGTACGATGATGTTTTTTACACGCCCCATAACAATTACATTCCTGGCATGGAATGGATGAACCTGTATATGTGA

Protein Analysis

216

Amino Acids

24.85

Weight (kDa)

6.77

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 60 - 113 1.2e-16 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18550 AT4G36740 AT4G36740
fragaria_vesca FvH4_1g13930 FvH4_1g13930
malus_domestica MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica Prupe.7G149700_v2.0.a1
pyrus_communis pycom02g12010
rosa_chinensis RchiOBHm_Chr2g0102221
rosa_laevigata RLG00000017139
rosa_multiflora Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii Rroxscaffold_2G00140640
rosa_rugosa Rorug02G0105900
rosa_samantha Rh2AG153800 Rh2CG159400
rosa_wichuraiana Rw2G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 133
AccI GTMKAC 2 cut(s) 81, 406
AciI CCGC 1 cut(s) 495
AclWI GGATC 4 cut(s) 281, 444, 457, 536
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 130
AfaI GTAC 4 cut(s) 65, 96, 359, 578
AfiI CCNNNNNNNGG 2 cut(s) 104, 554
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 4 cut(s) 313, 329, 345, 361
AluBI AGCT 4 cut(s) 187, 217, 430, 516
AluI AGCT 4 cut(s) 187, 217, 430, 516
Alw21I GWGCWC 3 cut(s) 219, 483, 518
AlwI GGATC 4 cut(s) 281, 444, 457, 536
AoxI GGCC 2 cut(s) 69, 496
ApoI RAATTY 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 497
BanII GRGCYC 3 cut(s) 219, 328, 518
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 3 cut(s) 219, 483, 518
BceAI ACGGC 2 cut(s) 207, 485
BciT130I CCWGG 1 cut(s) 618
BfrI CTTAAG 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 124
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 3 cut(s) 109, 311, 499
BmrFI CCNGG 1 cut(s) 618
BmrI ACTGGG 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 287
BoxI GACNNNNGTC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 3 cut(s) 233, 416, 431
BsaHI GRCGYC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 528
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 554
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 246, 282
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 104, 554
BseMII CTCAG 3 cut(s) 240, 387, 444
BseNI ACTGG 2 cut(s) 246, 282
BseRI GAGGAG 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 2 cut(s) 71, 498
BsiHKAI GWGCWC 3 cut(s) 219, 483, 518
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 104, 554
BsnI GGCC 2 cut(s) 71, 498
Bsp1286I GDGCHC 4 cut(s) 219, 328, 483, 518
Bsp143I GATC 5 cut(s) 34, 286, 436, 462, 541
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 71, 498
BspCNI CTCAG 3 cut(s) 241, 388, 445
BspLI GGNNCC 3 cut(s) 109, 311, 499
BspPI GGATC 4 cut(s) 281, 444, 457, 536
BspTI CTTAAG 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 2 cut(s) 246, 282
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 5 cut(s) 34, 286, 436, 462, 541
BssNI GRCGYC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 2 cut(s) 391, 509
Bst6I CTCTTC 4 cut(s) 134, 173, 348, 567
BstACI GRCGYC 1 cut(s) 130
BstAFI CTTAAG 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 120, 267
BstDEI CTNAG 3 cut(s) 249, 396, 453
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 636
BstKTI GATC 5 cut(s) 37, 289, 439, 465, 544
BstMBI GATC 5 cut(s) 34, 286, 436, 462, 541
BstMWI GCNNNNNNNGC 3 cut(s) 124, 478, 501
BstNI CCWGG 1 cut(s) 618
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 616
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 2 cut(s) 71, 498
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 120, 267
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 497
Csp6I GTAC 4 cut(s) 64, 95, 358, 577
CviAII CATG 4 cut(s) 380, 491, 529, 622
CviQI GTAC 4 cut(s) 64, 95, 358, 577
DdeI CTNAG 3 cut(s) 249, 396, 453
DpnI GATC 5 cut(s) 36, 288, 438, 464, 543
DpnII GATC 5 cut(s) 34, 286, 436, 462, 541
Eam1104I CTCTTC 4 cut(s) 134, 173, 348, 567
EarI CTCTTC 4 cut(s) 134, 173, 348, 567
Ecl136II GAGCTC 2 cut(s) 217, 516
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 3 cut(s) 219, 328, 518
Eco53kI GAGCTC 2 cut(s) 217, 516
Eco57I CTGAAG 1 cut(s) 464
EcoICRI GAGCTC 2 cut(s) 217, 516
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 3 cut(s) 219, 328, 518
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 4 cut(s) 383, 494, 532, 625
FaiI YATR 9 cut(s) 42, 44, 381, 492, 530, 603, 623, 642, 644
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 249, 281
FatI CATG 4 cut(s) 379, 490, 528, 621
FauNDI CATATG 1 cut(s) 42
FblI GTMKAC 2 cut(s) 81, 406
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 1 cut(s) 643
FriOI GRGCYC 3 cut(s) 219, 328, 518
Fsp4HI GCNGC 1 cut(s) 496
GluI GCNGC 1 cut(s) 496
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 71, 498
HapII CCGG 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 4 cut(s) 383, 494, 532, 625
HinfI GANTC 2 cut(s) 245, 413
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 82, 205, 407
Hpy188I TCNGA 6 cut(s) 76, 250, 274, 418, 478, 513
Hpy188III TCNNGA 2 cut(s) 212, 284
Hpy8I GTNNAC 3 cut(s) 82, 205, 407
Hpy99I CGWCG 2 cut(s) 132, 135
HpyAV CCTTC 4 cut(s) 218, 315, 439, 451
HpyCH4III ACNGT 2 cut(s) 391, 509
HpyCH4IV ACGT 2 cut(s) 130, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 478, 501
HpyF3I CTNAG 3 cut(s) 249, 396, 453
HpySE526I ACGT 2 cut(s) 130, 483
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 4 cut(s) 383, 494, 532, 625
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 5 cut(s) 34, 286, 436, 462, 541
LmnI GCTCC 3 cut(s) 107, 478, 521
LpnPI CCDG 7 cut(s) 132, 227, 247, 263, 514, 603, 630
MaeII ACGT 2 cut(s) 130, 483
MalI GATC 5 cut(s) 36, 288, 438, 464, 543
MboI GATC 5 cut(s) 34, 286, 436, 462, 541
MboII GAAGA 7 cut(s) 41, 151, 190, 265, 346, 365, 584
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 4 cut(s) 219, 328, 483, 518
MluCI AATT 4 cut(s) 90, 220, 560, 607
MlyI GAGTC 2 cut(s) 254, 422
MmeI TCCRAC 4 cut(s) 311, 327, 456, 490
MnlI CCTC 8 cut(s) 82, 121, 174, 300, 343, 442, 529, 555
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 2 cut(s) 174, 368
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 618
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 124, 478, 501
NaeI GCCGGC 1 cut(s) 120
NcoI CCATGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 42
NdeII GATC 5 cut(s) 34, 286, 436, 462, 541
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 4 cut(s) 383, 494, 532, 625
NlaIV GGNNCC 3 cut(s) 109, 311, 499
NmeAIII GCCGAG 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 2 cut(s) 253, 421
PpsI GAGTC 2 cut(s) 253, 421
PshAI GACNNNNGTC 1 cut(s) 412
Psp124BI GAGCTC 2 cut(s) 219, 518
Psp6I CCWGG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 3 cut(s) 109, 311, 499
PspPI GGNCC 1 cut(s) 497
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 4 cut(s) 65, 96, 359, 578
RsaNI GTAC 4 cut(s) 64, 95, 358, 577
SacI GAGCTC 2 cut(s) 219, 518
SaqAI TTAA 2 cut(s) 174, 368
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 5 cut(s) 34, 286, 436, 462, 541
Sau96I GGNCC 1 cut(s) 497
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 2 cut(s) 254, 422
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 4 cut(s) 219, 328, 483, 518
SmlI CTYRAG 4 cut(s) 173, 212, 410, 431
SmoI CTYRAG 4 cut(s) 173, 212, 410, 431
Sse9I AATT 4 cut(s) 90, 220, 560, 607
SsiI CCGC 1 cut(s) 495
SstI GAGCTC 2 cut(s) 219, 518
StyD4I CCNGG 1 cut(s) 616
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 391, 509
TaiI ACGT 2 cut(s) 133, 486
TaqI TCGA 2 cut(s) 319, 425
TasI AATT 4 cut(s) 90, 220, 560, 607
TatI WGTACW 2 cut(s) 63, 357
TauI GCSGC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 174, 368
Tru9I TTAA 2 cut(s) 174, 368
TscAI CASTG 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 396, 647
TspRI CASTG 1 cut(s) 394
Vha464I CTTAAG 1 cut(s) 173
XapI RAATTY 1 cut(s) 560
XmiI GTMKAC 2 cut(s) 81, 406
ZraI GACGTC 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.