Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013371

Physical Location & Seq

Genomic Coordinates Reverse (-)

12604594 .. 12606741

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1152500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCGTTGTCTCCCAAGCCATTCAACTTCAACACGTCTGTTTCTTGAGAGAAAGCGAGCGGTAGAGAAAAGGAGAGTTGGAAAGAGAGTGACAAGGCTAACTAGCCATAGGAAATTAGGAAGCATGGCAACCAACAACCACCAAGTTGTTGAAGACGATCATCATATGCTACTCATCTCTCACTTGTACTCGGCCTCTGATGTCTACACTCAAATTGTACCCCCACAAGGAGCCTCAAAGCCGGCAAGGCGCCGTCGTAAGAAGAGAAAAGGTGGAGAAGCTGGTGGTGTTGTTGGGCTTAAGAAGAGGAAGCTCACGGCTGAACAAGTAAACCTTCTTGAGCTCAATTTTGGAAACGAACACAAACTGGAGTCTGAGAAGAAAGACAGGCTTGCTTCTGAACTGGGTCTTGATCCTCGTCAAGTTGCTGTTTGGTTCCAAAATCGAAGGGCTCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCAACCTTAAAGAAAGAACATGAAAACACTGTTGCTGAGAAATGTAGACTTGAATCCGAGATGTCGAAGCTCAAGGATCAACTGTCGGAGGCTGAGATGGAGATCCAAAGGCTGTTGGAGCGCGTTGATCATGGCGGCCCCAGCAACAGTCCGAGTTCCTCGTTCTCCATGGAAGCCATTGATCCTCCATTTTTAGGAGAATTTGGGGTGGAAGAGTATGATGATGTTTTTTACATGCCCCAAAACAATTACATTCCTGGCATGGAATGGATGAACCTGTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

258

Amino Acids

29.75

Weight (kDa)

9.37

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	102 - 155	1.6e-16	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18550 AT4G36740 AT4G36740
fragaria_vesca	FvH4_1g13930 FvH4_1g13930
malus_domestica	MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica	Prupe.7G149700_v2.0.a1
pyrus_communis	pycom02g12010
rosa_chinensis	RchiOBHm_Chr2g0102221
rosa_laevigata	RLG00000017139
rosa_multiflora	Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii	Rroxscaffold_2G00140640
rosa_rugosa	Rorug02G0105900
rosa_samantha	Rh2AG153800 Rh2CG159400
rosa_wichuraiana	Rw2G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	2 cut(s)	204, 532
AccII	CGCG	1 cut(s)	609
AciI	CCGC	2 cut(s)	59, 621
AclWI	GGATC	4 cut(s)	407, 570, 583, 662
AcsI	RAATTY	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	250
AfaI	GTAC	3 cut(s)	188, 219, 485
AfiI	CCNNNNNNNGG	2 cut(s)	227, 680
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	4 cut(s)	24, 30, 152, 539
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	742
AjuI	GAANNNNNNNTTGG	4 cut(s)	439, 455, 471, 487
AluBI	AGCT	4 cut(s)	281, 313, 343, 556
AluI	AGCT	4 cut(s)	281, 313, 343, 556
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	4 cut(s)	407, 570, 583, 662
AoxI	GGCC	2 cut(s)	192, 622
ApoI	RAATTY	1 cut(s)	686
AspLEI	GCGC	2 cut(s)	252, 609
AspS9I	GGNCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	2 cut(s)	345, 454
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	345
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	2 cut(s)	237, 333
BciT130I	CCWGG	1 cut(s)	744
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	253
BfrI	CTTAAG	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	1 cut(s)	744
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	4 cut(s)	232, 251, 437, 625
BmrFI	CCNGG	1 cut(s)	744
BmrI	ACTGGG	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	3 cut(s)	65, 359, 542
BsaBI	GATNNNNATC	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 680
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	372, 408
Bse8I	GATNNNNATC	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	762
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	2 cut(s)	227, 680
BseMII	CTCAG	3 cut(s)	366, 513, 570
BseNI	ACTGG	2 cut(s)	372, 408
BseYI	CCCAGC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	2 cut(s)	194, 624
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	227, 680
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	194, 624
Bsp1286I	GDGCHC	2 cut(s)	345, 454
Bsp143I	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	2 cut(s)	59, 621
BspANI	GGCC	2 cut(s)	194, 624
BspCNI	CTCAG	3 cut(s)	367, 514, 571
BspFNI	CGCG	1 cut(s)	609
BspLI	GGNNCC	4 cut(s)	232, 251, 437, 625
BspPI	GGATC	4 cut(s)	407, 570, 583, 662
BspT107I	GGYRCC	1 cut(s)	249
BspTI	CTTAAG	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	372, 408
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
BssNI	GRCGYC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	517, 570, 635
Bst6I	CTCTTC	4 cut(s)	257, 299, 474, 693
BstACI	GRCGYC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	57, 243, 393
BstDEI	CTNAG	3 cut(s)	375, 522, 579
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	762
BstFNI	CGCG	1 cut(s)	609
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	252, 609
BstKTI	GATC	6 cut(s)	160, 415, 565, 591, 616, 670
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 604, 627
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	742
BstUI	CGCG	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	194, 624
BtgI	CCRYGG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	3 cut(s)	57, 243, 393
CfoI	GCGC	2 cut(s)	252, 609
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	3 cut(s)	187, 218, 484
CviAII	CATG	6 cut(s)	124, 506, 617, 655, 721, 748
CviQI	GTAC	3 cut(s)	187, 218, 484
DdeI	CTNAG	3 cut(s)	375, 522, 579
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	6 cut(s)	159, 414, 564, 590, 615, 669
DpnII	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
Eam1104I	CTCTTC	4 cut(s)	257, 299, 474, 693
EarI	CTCTTC	4 cut(s)	257, 299, 474, 693
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	2 cut(s)	345, 454
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	345, 454
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	6 cut(s)	127, 509, 620, 658, 724, 751
FalI	AAGNNNNNCTT	4 cut(s)	318, 350, 375, 407
FatI	CATG	6 cut(s)	123, 505, 616, 654, 720, 747
FauNDI	CATATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	2 cut(s)	204, 532
Fnu4HI	GCNGC	1 cut(s)	622
FokI	GGATG	1 cut(s)	769
FriOI	GRGCYC	2 cut(s)	345, 454
Fsp4HI	GCNGC	1 cut(s)	622
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	2 cut(s)	251, 608
GluI	GCNGC	1 cut(s)	622
GsaI	CCCAGC	1 cut(s)	630
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	194, 624
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	2 cut(s)	252, 609
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	6 cut(s)	127, 509, 620, 658, 724, 751
Hin6I	GCGC	2 cut(s)	250, 607
HinP1I	GCGC	2 cut(s)	250, 607
HinfI	GANTC	2 cut(s)	371, 539
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	205, 331, 533
Hpy188I	TCNGA	6 cut(s)	199, 376, 400, 544, 574, 639
Hpy188III	TCNNGA	3 cut(s)	44, 338, 410
Hpy8I	GTNNAC	3 cut(s)	205, 331, 533
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	344, 441
HpyCH4III	ACNGT	3 cut(s)	517, 570, 635
HpyCH4IV	ACGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 604, 627
HpyF3I	CTNAG	3 cut(s)	375, 522, 579
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	6 cut(s)	127, 509, 620, 658, 724, 751
HspAI	GCGC	2 cut(s)	250, 607
KasI	GGCGCC	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
LmnI	GCTCC	2 cut(s)	230, 604
LpnPI	CCDG	8 cut(s)	255, 267, 353, 373, 389, 640, 729, 756
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	6 cut(s)	159, 414, 564, 590, 615, 669
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
MboII	GAAGA	7 cut(s)	164, 274, 316, 391, 472, 491, 710
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	2 cut(s)	345, 454
MluCI	AATT	5 cut(s)	113, 213, 346, 686, 733
Mly113I	GGCGCC	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	5 cut(s)	58, 437, 453, 552, 582
MnlI	CCTC	8 cut(s)	205, 244, 300, 426, 469, 568, 655, 681
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	2 cut(s)	300, 494
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	744
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	247, 604, 627
NaeI	GCCGGC	1 cut(s)	243
NarI	GGCGCC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	654
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	6 cut(s)	127, 509, 620, 658, 724, 751
NlaIV	GGNNCC	4 cut(s)	232, 251, 437, 625
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	623
PleI	GAGTC	1 cut(s)	379
PluTI	GGCGCC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	4 cut(s)	232, 251, 437, 625
PspPI	GGNCC	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	588
RsaI	GTAC	3 cut(s)	188, 219, 485
RsaNI	GTAC	3 cut(s)	187, 218, 484
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	300, 494
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	6 cut(s)	157, 412, 562, 588, 613, 667
Sau96I	GGNCC	1 cut(s)	623
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	2 cut(s)	345, 454
SetI	ASST	9 cut(s)	37, 274, 283, 315, 336, 345, 494, 558, 765
SfoI	GGCGCC	1 cut(s)	251
SmlI	CTYRAG	4 cut(s)	44, 299, 338, 557
SmoI	CTYRAG	4 cut(s)	44, 299, 338, 557
Sse9I	AATT	5 cut(s)	113, 213, 346, 686, 733
SsiI	CCGC	2 cut(s)	59, 621
SspDI	GGCGCC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	3 cut(s)	517, 570, 635
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	445, 551
TasI	AATT	5 cut(s)	113, 213, 346, 686, 733
TatI	WGTACW	2 cut(s)	186, 483
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	300, 494
Tru9I	TTAA	2 cut(s)	300, 494
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	522, 773
TspRI	CASTG	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	686
XceI	RCATGY	1 cut(s)	724
XmiI	GTMKAC	2 cut(s)	204, 532
XspI	CTAG	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.