FvH4_1g13930

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013371
Physical Location & Seq
Reverse (-)
7665471 .. 7667464
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13930.t2

Sequence Viewer

Length: 645 bp
ATGACAACCACCATTAACAACCAAGTTGTTGATCAAGATCATATGCTACTCATCTCTCAGATGTACCCTGATGTTTACACGCAAATTGTACCACAAGCAGCGACAAAGCCGCGACGCCGCCGTAAGAAGAGCAAGAGCGGAGAAGCTGATGGCGCCGGAGCCAAGAAGAGGAAGCTCACTGAGGAACAAGTGACTCTTCTTGAGCTAAATTTCGGTAACGAGCATAAGCTCGAGTCTGAGAAGAAGGACAGGCTCGCCTCCCAGCTTGGCCTTGACCCTCGTCAAGTTGCCGTCTGGTTTCAGAACCGAAGGGCTCGATGGAAGAACAAGAAGCTGGAGGAAGAGTACTCGACCTTGAAGACGGCTCACGAAAACGTCATCGTGGAAAAATGCAAGCTCGAATCCGAGATGCAAAAGCTCAAGGAGCGACTCTCTGAGACGGAGAAGGAGATCCACAGGCTGTCGGAGCGTGTCGAAGGCGGCGGTTCGAGCAACAGCCCGAGCTCCTCGCTGTCGATGGAAGCGAATATTGGTGGTCCTCCGCCGTTTTTCGGAGAGTTTGGGGTGGAGGAGTATGATGATGTTTTCTACATGCCCCAAAACAACTACATCAATGCCATGGAATGGATGAATCCGTATATGTGA

Protein Analysis

215

Amino Acids

24.69

Weight (kDa)

6.47

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 57 - 110 7.8e-17 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18550 AT4G36740 AT4G36740
fragaria_vesca FvH4_1g13930 FvH4_1g13930
malus_domestica MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica Prupe.7G149700_v2.0.a1
pyrus_communis pycom02g12010
rosa_chinensis RchiOBHm_Chr2g0102221
rosa_laevigata RLG00000017139
rosa_multiflora Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii Rroxscaffold_2G00140640
rosa_rugosa Rorug02G0105900
rosa_samantha Rh2AG153800 Rh2CG159400
rosa_wichuraiana Rw2G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 624
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 1 cut(s) 112
AciI CCGC 6 cut(s) 110, 118, 138, 480, 483, 542
AclWI GGATC 1 cut(s) 445
AcsI RAATTY 1 cut(s) 208
AcyI GRCGYC 2 cut(s) 115, 153
AfaI GTAC 3 cut(s) 65, 90, 347
AfiI CCNNNNNNNGG 3 cut(s) 168, 551, 624
AgsI TTSAA 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 9 cut(s) 146, 175, 205, 229, 265, 334, 397, 418, 504
AluI AGCT 9 cut(s) 146, 175, 205, 229, 265, 334, 397, 418, 504
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 445
Ama87I CYCGRG 2 cut(s) 230, 499
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 536
AvaI CYCGRG 2 cut(s) 230, 499
AvaII GGWCC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 2 cut(s) 316, 506
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 143, 312, 511
BceAI ACGGC 4 cut(s) 105, 275, 378, 529
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 4 cut(s) 99, 110, 118, 481
BlsI GCNGC 4 cut(s) 100, 111, 119, 482
BmcAI AGTACT 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 2 cut(s) 230, 499
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 2 cut(s) 154, 160
BmsI GCATC 1 cut(s) 399
BoxI GACNNNNGTC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 221, 404
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 115, 153
BsaJI CCNNGG 1 cut(s) 618
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 551, 624
Bse8I GATNNNNATC 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 1 cut(s) 633
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 168, 551, 624
BseMII CTCAG 4 cut(s) 71, 171, 228, 426
BseRI GAGGAG 2 cut(s) 496, 584
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 2 cut(s) 230, 499
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 168, 551, 624
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 2 cut(s) 230, 499
Bsp1286I GDGCHC 2 cut(s) 316, 506
Bsp143I GATC 3 cut(s) 31, 37, 450
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 6 cut(s) 110, 118, 138, 480, 483, 542
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 4 cut(s) 70, 172, 229, 427
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 154, 160
BspPI GGATC 1 cut(s) 445
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 3 cut(s) 31, 37, 450
BssNI GRCGYC 2 cut(s) 115, 153
BssT1I CCWWGG 1 cut(s) 618
Bst6I CTCTTC 4 cut(s) 122, 161, 201, 336
BstACI GRCGYC 2 cut(s) 115, 153
BstC8I GCNNGC 2 cut(s) 255, 395
BstDEI CTNAG 4 cut(s) 57, 180, 237, 435
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 1 cut(s) 633
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 3 cut(s) 34, 40, 453
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 3 cut(s) 31, 37, 450
BstMWI GCNNNNNNNGC 4 cut(s) 152, 424, 466, 489
BstNSI RCATGY 1 cut(s) 595
BstPAI GACNNNNGTC 1 cut(s) 279
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 1 cut(s) 633
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 255, 395
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 536
CseI GACGC 1 cut(s) 123
Csp6I GTAC 3 cut(s) 64, 89, 346
CviAII CATG 2 cut(s) 592, 619
CviQI GTAC 3 cut(s) 64, 89, 346
DdeI CTNAG 4 cut(s) 57, 180, 237, 435
DinI GGCGCC 1 cut(s) 154
DpnI GATC 3 cut(s) 33, 39, 452
DpnII GATC 3 cut(s) 31, 37, 450
Eam1104I CTCTTC 4 cut(s) 122, 161, 201, 336
EarI CTCTTC 4 cut(s) 122, 161, 201, 336
EciI GGCGGA 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 316, 506
Eco47I GGWCC 1 cut(s) 536
Eco53kI GAGCTC 1 cut(s) 504
Eco88I CYCGRG 2 cut(s) 230, 499
EcoICRI GAGCTC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 2 cut(s) 316, 506
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 2 cut(s) 595, 622
FaiI YATR 8 cut(s) 42, 44, 225, 576, 593, 620, 639, 641
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 2 cut(s) 591, 618
FauNDI CATATG 1 cut(s) 42
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 99, 110, 118, 481
FokI GGATG 1 cut(s) 640
FriOI GRGCYC 2 cut(s) 316, 506
Fsp4HI GCNGC 4 cut(s) 99, 110, 118, 481
GlaI GCGC 1 cut(s) 154
GluI GCNGC 4 cut(s) 99, 110, 118, 481
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 2 cut(s) 115, 153
Hin1II CATG 2 cut(s) 595, 622
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 5 cut(s) 193, 233, 401, 429, 631
HpaII CCGG 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 7 cut(s) 60, 238, 303, 406, 436, 466, 554
Hpy188III TCNNGA 3 cut(s) 35, 200, 368
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 4 cut(s) 238, 303, 439, 470
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 393, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 424, 466, 489
HpyF3I CTNAG 4 cut(s) 57, 180, 237, 435
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 2 cut(s) 115, 153
Hsp92II CATG 2 cut(s) 595, 622
HspAI GCGC 1 cut(s) 153
KasI GGCGCC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 37, 450
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 4 cut(s) 158, 424, 466, 509
LpnPI CCDG 7 cut(s) 81, 169, 235, 275, 280, 320, 442
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 399
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 190, 215
MalI GATC 3 cut(s) 33, 39, 452
MbiI CCGCTC 1 cut(s) 138
MboI GATC 3 cut(s) 31, 37, 450
MboII GAAGA 7 cut(s) 139, 178, 188, 253, 334, 353, 370
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 316, 506
MluCI AATT 2 cut(s) 84, 208
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 187, 242, 423
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 8 cut(s) 162, 175, 268, 288, 331, 517, 549, 562
MseI TTAA 1 cut(s) 15
MspI CCGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 4 cut(s) 152, 424, 466, 489
NarI GGCGCC 1 cut(s) 153
NcoI CCATGG 1 cut(s) 618
NdeI CATATG 1 cut(s) 42
NdeII GATC 3 cut(s) 31, 37, 450
NlaIII CATG 2 cut(s) 595, 622
NlaIV GGNNCC 2 cut(s) 154, 160
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 595
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PfeI GAWTC 2 cut(s) 401, 631
PflMI CCANNNNNTGG 1 cut(s) 624
PkrI GCNGC 4 cut(s) 100, 111, 119, 482
PleI GAGTC 3 cut(s) 187, 241, 423
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 187, 241, 423
PshAI GACNNNNGTC 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 154, 160
PspPI GGNCC 1 cut(s) 536
PspXI VCTCGAGB 1 cut(s) 230
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 3 cut(s) 65, 90, 347
RsaNI GTAC 3 cut(s) 64, 89, 346
SacI GAGCTC 1 cut(s) 506
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 4 cut(s) 99, 110, 118, 481
Sau3AI GATC 3 cut(s) 31, 37, 450
Sau96I GGNCC 1 cut(s) 536
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 3 cut(s) 187, 242, 423
SduI GDGCHC 2 cut(s) 316, 506
SfaNI GCATC 1 cut(s) 399
SfoI GGCGCC 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 536
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 3 cut(s) 200, 230, 419
SmoI CTYRAG 3 cut(s) 200, 230, 419
Sse9I AATT 2 cut(s) 84, 208
SsiI CCGC 6 cut(s) 110, 118, 138, 480, 483, 542
SspDI GGCGCC 1 cut(s) 152
SspI AATATT 1 cut(s) 529
SstI GAGCTC 1 cut(s) 506
StyI CCWWGG 1 cut(s) 618
TaiI ACGT 1 cut(s) 378
TaqI TCGA 7 cut(s) 231, 316, 350, 399, 474, 488, 515
TasI AATT 2 cut(s) 84, 208
TatI WGTACW 1 cut(s) 345
TauI GCSGC 3 cut(s) 112, 120, 483
TfiI GAWTC 2 cut(s) 401, 631
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 644
TspGWI ACGGA 2 cut(s) 455, 624
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 536
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.