Rmu_sc0006727.1_g000013

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006727.1
OG0013371
Physical Location & Seq
Reverse (-)
30073 .. 31523
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006727.1_g000013.1.cds

Sequence Viewer

Length: 648 bp
atgacaacaacaacccccattaaccaccaagttgatcaagatcatatgctactcatctctcagttgtaccctgatgtttacacccaaattgtacccccgcaaggagcagcgactaaaccgcgacgccgccgtaagaagagcaagagcggagatgctggtggagccggagccaagaagaggaagctcactgaggaacaagtgactcttctagagctcaatttcggcaacgagcataaattggagtctgagaagaaggaccggctagcttccgagcttggactcgaccctcgtcaagtggctgtttggtttcagaaccgaagggctcgatggaagaacaagaagctggaggaagagtactctatcttgaagaaggatcatgaaaacgtcgtccttgagaaatgcaagcttgaatccgagatggaaaagctgaaggagcaactctcggaggcggagaaggagatccacaggctgtcagagcgtgctgaaggcggtggttcgagcaacagcccgagctcctcgctgtcgatggaagcgaatattgatcctccgtttttcggagaatttggggtggaggagtatgatggtgttttctacatgccccaaaacaactacatcaatggcatggaatggatgaaccagtatatgtga

Protein Analysis

215

Amino Acids

24.74

Weight (kDa)

6.03

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18550 AT4G36740 AT4G36740
fragaria_vesca FvH4_1g13930 FvH4_1g13930
malus_domestica MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica Prupe.7G149700_v2.0.a1
pyrus_communis pycom02g12010
rosa_chinensis RchiOBHm_Chr2g0102221
rosa_laevigata RLG00000017139
rosa_multiflora Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii Rroxscaffold_2G00140640
rosa_rugosa Rorug02G0105900
rosa_samantha Rh2AG153800 Rh2CG159400
rosa_wichuraiana Rw2G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 1 cut(s) 121
AciI CCGC 6 cut(s) 98, 119, 127, 147, 449, 489
AclWI GGATC 3 cut(s) 381, 454, 536
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 2 cut(s) 449, 504
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 3 cut(s) 68, 93, 356
AfiI CCNNNNNNNGG 3 cut(s) 101, 177, 554
AgsI TTSAA 2 cut(s) 367, 410
AluBI AGCT 8 cut(s) 184, 214, 266, 274, 343, 406, 427, 513
AluI AGCT 8 cut(s) 184, 214, 266, 274, 343, 406, 427, 513
Alw21I GWGCWC 2 cut(s) 216, 515
AlwI GGATC 3 cut(s) 381, 454, 536
Ama87I CYCGRG 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 256
AsuNHI GCTAGC 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 3 cut(s) 216, 325, 515
Bbv12I GWGCWC 2 cut(s) 216, 515
BbvI GCAGC 1 cut(s) 119
BccI CCATC 4 cut(s) 321, 412, 520, 575
BceAI ACGGC 1 cut(s) 114
BclI TGATCA 1 cut(s) 34
BfaI CTAG 2 cut(s) 209, 263
BisI GCNGC 2 cut(s) 108, 127
BlsI GCNGC 2 cut(s) 109, 128
BmcAI AGTACT 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 163, 169
BmsI GCATC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 266
BoxI GACNNNNGTC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 177, 554
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 1 cut(s) 636
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 101, 177, 554
BseMII CTCAG 3 cut(s) 74, 180, 237
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 2 cut(s) 505, 587
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 216, 515
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 2 cut(s) 165, 259
BslI CCNNNNNNNGG 3 cut(s) 101, 177, 554
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 216, 325, 515
Bsp143I GATC 5 cut(s) 34, 40, 373, 459, 541
BspACI CCGC 6 cut(s) 98, 119, 127, 147, 449, 489
BspCNI CTCAG 3 cut(s) 73, 181, 238
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 163, 169
BspOI GCTAGC 1 cut(s) 266
BspPI GGATC 3 cut(s) 381, 454, 536
BspQI GCTCTTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 258
BssMI GATC 5 cut(s) 34, 40, 373, 459, 541
BssNI GRCGYC 1 cut(s) 124
Bst6I CTCTTC 4 cut(s) 131, 170, 210, 345
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 264, 404, 480
BstDEI CTNAG 3 cut(s) 60, 189, 246
BstF5I GGATG 1 cut(s) 636
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 5 cut(s) 37, 43, 376, 462, 544
BstMBI GATC 5 cut(s) 34, 40, 373, 459, 541
BstMWI GCNNNNNNNGC 3 cut(s) 161, 433, 475
BstNSI RCATGY 1 cut(s) 598
BstPAI GACNNNNGTC 1 cut(s) 288
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 459
BstYI RGATCY 1 cut(s) 459
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 264, 404, 480
CciI TCATGA 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 67, 92, 355
CviAII CATG 3 cut(s) 377, 595, 622
CviQI GTAC 3 cut(s) 67, 92, 355
DdeI CTNAG 3 cut(s) 60, 189, 246
DpnI GATC 5 cut(s) 36, 42, 375, 461, 543
DpnII GATC 5 cut(s) 34, 40, 373, 459, 541
Eam1104I CTCTTC 4 cut(s) 131, 170, 210, 345
EarI CTCTTC 4 cut(s) 131, 170, 210, 345
EciI GGCGGA 1 cut(s) 464
Ecl136II GAGCTC 2 cut(s) 214, 513
Eco24I GRGCYC 3 cut(s) 216, 325, 515
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 2 cut(s) 214, 513
Eco57I CTGAAG 2 cut(s) 449, 504
Eco88I CYCGRG 1 cut(s) 508
EcoICRI GAGCTC 2 cut(s) 214, 513
EcoT38I GRGCYC 3 cut(s) 216, 325, 515
FaeI CATG 3 cut(s) 380, 598, 625
FaiI YATR 9 cut(s) 45, 47, 234, 378, 579, 596, 623, 642, 644
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 3 cut(s) 376, 594, 621
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 108, 127
FokI GGATG 1 cut(s) 643
FriOI GRGCYC 3 cut(s) 216, 325, 515
Fsp4HI GCNGC 2 cut(s) 108, 127
FspBI CTAG 2 cut(s) 209, 263
GluI GCNGC 2 cut(s) 108, 127
GsuI CTGGAG 1 cut(s) 365
HapII CCGG 2 cut(s) 165, 259
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 3 cut(s) 380, 598, 625
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 4 cut(s) 202, 242, 279, 410
HpaII CCGG 2 cut(s) 165, 259
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 7 cut(s) 247, 271, 312, 415, 445, 475, 557
Hpy188III TCNNGA 4 cut(s) 38, 209, 364, 377
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 126, 389
HpyAV CCTTC 6 cut(s) 247, 312, 364, 424, 448, 479
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 433, 475
HpyF3I CTNAG 3 cut(s) 60, 189, 246
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 3 cut(s) 380, 598, 625
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 5 cut(s) 34, 40, 373, 459, 541
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 5 cut(s) 104, 161, 167, 433, 518
LpnPI CCDG 6 cut(s) 84, 141, 178, 272, 329, 451
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 209, 263
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 36, 42, 375, 461, 543
MbiI CCGCTC 1 cut(s) 147
MboI GATC 5 cut(s) 34, 40, 373, 459, 541
MboII GAAGA 7 cut(s) 148, 187, 197, 262, 343, 362, 379
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 3 cut(s) 216, 325, 515
MluCI AATT 4 cut(s) 87, 217, 236, 560
MlyI GAGTC 3 cut(s) 196, 251, 273
MnlI CCTC 8 cut(s) 171, 184, 297, 340, 439, 526, 555, 565
MseI TTAA 1 cut(s) 21
MspI CCGG 2 cut(s) 165, 259
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 161, 433, 475
NdeI CATATG 1 cut(s) 45
NdeII GATC 5 cut(s) 34, 40, 373, 459, 541
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 3 cut(s) 380, 598, 625
NlaIV GGNNCC 2 cut(s) 163, 169
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 109, 128
PleI GAGTC 3 cut(s) 196, 250, 273
PpsI GAGTC 3 cut(s) 196, 250, 273
PshAI GACNNNNGTC 1 cut(s) 288
Psp124BI GAGCTC 2 cut(s) 216, 515
PspN4I GGNNCC 2 cut(s) 163, 169
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 3 cut(s) 68, 93, 356
RsaNI GTAC 3 cut(s) 67, 92, 355
SacI GAGCTC 2 cut(s) 216, 515
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 108, 127
Sau3AI GATC 5 cut(s) 34, 40, 373, 459, 541
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 3 cut(s) 196, 251, 273
SduI GDGCHC 3 cut(s) 216, 325, 515
SetI ASST 9 cut(s) 186, 216, 268, 276, 345, 387, 408, 429, 515
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 4 cut(s) 87, 217, 236, 560
SsiI CCGC 6 cut(s) 98, 119, 127, 147, 449, 489
SspI AATATT 1 cut(s) 538
SspMI CTAG 2 cut(s) 209, 263
SstI GAGCTC 2 cut(s) 216, 515
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 282, 325, 497, 524
TasI AATT 4 cut(s) 87, 217, 236, 560
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 393, 647
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 560
XbaI TCTAGA 1 cut(s) 208
XceI RCATGY 1 cut(s) 598
XspI CTAG 2 cut(s) 209, 263
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.