RchiOBHm_Chr2g0102221

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013371
Physical Location & Seq
Reverse (-)
13678375 .. 13680173
1799 bp
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UTR
Exon/CDS
Intron
PRQ47669

Sequence Viewer

Length: 648 bp
ATGACAACAACAACCCCCATTAACCACCAAGTTGATCAAGATCATATGCTACTCATCTCTCAGTTGTACCCTGATGTTTACACCCAAATTGTACCCCCGCAAGGAGCAGCGACTAAACCGCGACGCCGCCGTAAGAAGAGCAAGAGCGGAGAAGCTGGTGGAGCCGGAGCCAAGAAGAGGAAGCTCACTGAGGAACAAGTGACTCTTCTAGAGCTCAATTTCGGCAACGAGCATAAACTGGAGTCTGAGAAGAAGGACCGGCTCGCTTCCGAGCTTGGACTCGACCCTCGTCAAGTGGCTGTTTGGTTTCAGAACCGAAGGGCTCGATGGAAGAACAAGAAGCTGGAGGAAGAGTACTCTATCTTGAAGAAGGATCATGAAAACGTCGTCCTTGAGAAATGCAAGCTTGAATCCGAGATGGAAAAGCTGAAGGAGCAACTCTCGGAGGCGGAGAAGGAGATCCACAGGCTGTCAGAGCGTGCTGAAGGCGGTGGTTCGAGCAACAGCCCGAGCTCCTCGCTGTCGATGGAAGCGAATATTGATCCTCCTTTTTTCGGAGAATTTGGGGTGGAGGAGTATGATGGTGTTTTCTACATGCCCCAAAACAACTACATTAATGGCATGGAATGGATGAACCAGTATATGTGA

Protein Analysis

215

Amino Acids

24.75

Weight (kDa)

6.04

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 59 - 112 9e-17 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18550 AT4G36740 AT4G36740
fragaria_vesca FvH4_1g13930 FvH4_1g13930
malus_domestica MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica Prupe.7G149700_v2.0.a1
pyrus_communis pycom02g12010
rosa_chinensis RchiOBHm_Chr2g0102221
rosa_laevigata RLG00000017139
rosa_multiflora Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii Rroxscaffold_2G00140640
rosa_rugosa Rorug02G0105900
rosa_samantha Rh2AG153800 Rh2CG159400
rosa_wichuraiana Rw2G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 1 cut(s) 121
AciI CCGC 6 cut(s) 98, 119, 127, 147, 449, 489
AclWI GGATC 3 cut(s) 381, 454, 536
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 2 cut(s) 449, 504
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 3 cut(s) 68, 93, 356
AfiI CCNNNNNNNGG 3 cut(s) 101, 177, 554
AgsI TTSAA 2 cut(s) 367, 410
AluBI AGCT 8 cut(s) 155, 184, 214, 274, 343, 406, 427, 513
AluI AGCT 8 cut(s) 155, 184, 214, 274, 343, 406, 427, 513
Alw21I GWGCWC 2 cut(s) 216, 515
AlwI GGATC 3 cut(s) 381, 454, 536
Ama87I CYCGRG 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 560
AseI ATTAAT 1 cut(s) 615
AspS9I GGNCC 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 3 cut(s) 216, 325, 515
Bbv12I GWGCWC 2 cut(s) 216, 515
BbvI GCAGC 1 cut(s) 119
BccI CCATC 4 cut(s) 321, 412, 520, 575
BceAI ACGGC 1 cut(s) 114
BclI TGATCA 1 cut(s) 34
BfaI CTAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 108, 127
BlsI GCNGC 2 cut(s) 109, 128
BmcAI AGTACT 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 163, 169
BoxI GACNNNNGTC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 2 cut(s) 260, 365
BpuEI CTTGAG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 177, 554
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 243, 637
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 1 cut(s) 636
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 101, 177, 554
BseMII CTCAG 3 cut(s) 74, 180, 237
BseNI ACTGG 2 cut(s) 243, 637
BseRI GAGGAG 2 cut(s) 505, 587
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 216, 515
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 2 cut(s) 165, 259
BslI CCNNNNNNNGG 3 cut(s) 101, 177, 554
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 216, 325, 515
Bsp143I GATC 5 cut(s) 34, 40, 373, 459, 541
BspACI CCGC 6 cut(s) 98, 119, 127, 147, 449, 489
BspCNI CTCAG 3 cut(s) 73, 181, 238
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 163, 169
BspPI GGATC 3 cut(s) 381, 454, 536
BspQI GCTCTTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 2 cut(s) 243, 637
BssAI RCCGGY 1 cut(s) 258
BssMI GATC 5 cut(s) 34, 40, 373, 459, 541
BssNI GRCGYC 1 cut(s) 124
Bst6I CTCTTC 4 cut(s) 131, 170, 210, 345
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 264, 404, 480
BstDEI CTNAG 3 cut(s) 60, 189, 246
BstF5I GGATG 1 cut(s) 636
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 5 cut(s) 37, 43, 376, 462, 544
BstMBI GATC 5 cut(s) 34, 40, 373, 459, 541
BstMWI GCNNNNNNNGC 3 cut(s) 161, 433, 475
BstNSI RCATGY 1 cut(s) 598
BstPAI GACNNNNGTC 1 cut(s) 288
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 459
BstYI RGATCY 1 cut(s) 459
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 264, 404, 480
CciI TCATGA 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 67, 92, 355
CviAII CATG 3 cut(s) 377, 595, 622
CviQI GTAC 3 cut(s) 67, 92, 355
DdeI CTNAG 3 cut(s) 60, 189, 246
DpnI GATC 5 cut(s) 36, 42, 375, 461, 543
DpnII GATC 5 cut(s) 34, 40, 373, 459, 541
Eam1104I CTCTTC 4 cut(s) 131, 170, 210, 345
EarI CTCTTC 4 cut(s) 131, 170, 210, 345
EciI GGCGGA 1 cut(s) 464
Ecl136II GAGCTC 2 cut(s) 214, 513
Eco24I GRGCYC 3 cut(s) 216, 325, 515
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 2 cut(s) 214, 513
Eco57I CTGAAG 2 cut(s) 449, 504
Eco88I CYCGRG 1 cut(s) 508
EcoICRI GAGCTC 2 cut(s) 214, 513
EcoT38I GRGCYC 3 cut(s) 216, 325, 515
FaeI CATG 3 cut(s) 380, 598, 625
FaiI YATR 9 cut(s) 45, 47, 234, 378, 579, 596, 623, 642, 644
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 3 cut(s) 376, 594, 621
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 108, 127
FokI GGATG 1 cut(s) 643
FriOI GRGCYC 3 cut(s) 216, 325, 515
Fsp4HI GCNGC 2 cut(s) 108, 127
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 108, 127
GsuI CTGGAG 2 cut(s) 260, 365
HapII CCGG 2 cut(s) 165, 259
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 3 cut(s) 380, 598, 625
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 4 cut(s) 202, 242, 279, 410
HpaII CCGG 2 cut(s) 165, 259
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 7 cut(s) 247, 271, 312, 415, 445, 475, 557
Hpy188III TCNNGA 4 cut(s) 38, 209, 364, 377
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 126, 389
HpyAV CCTTC 6 cut(s) 247, 312, 364, 424, 448, 479
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 433, 475
HpyF3I CTNAG 3 cut(s) 60, 189, 246
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 3 cut(s) 380, 598, 625
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 5 cut(s) 34, 40, 373, 459, 541
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 5 cut(s) 104, 161, 167, 433, 518
LpnPI CCDG 7 cut(s) 84, 141, 178, 224, 272, 329, 451
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 36, 42, 375, 461, 543
MbiI CCGCTC 1 cut(s) 147
MboI GATC 5 cut(s) 34, 40, 373, 459, 541
MboII GAAGA 7 cut(s) 148, 187, 197, 262, 343, 362, 379
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 3 cut(s) 216, 325, 515
MluCI AATT 3 cut(s) 87, 217, 560
MlyI GAGTC 3 cut(s) 196, 251, 273
MnlI CCTC 8 cut(s) 171, 184, 297, 340, 439, 526, 555, 565
MseI TTAA 2 cut(s) 21, 615
MspI CCGG 2 cut(s) 165, 259
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 161, 433, 475
NdeI CATATG 1 cut(s) 45
NdeII GATC 5 cut(s) 34, 40, 373, 459, 541
NlaIII CATG 3 cut(s) 380, 598, 625
NlaIV GGNNCC 2 cut(s) 163, 169
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 109, 128
PleI GAGTC 3 cut(s) 196, 250, 273
PpsI GAGTC 3 cut(s) 196, 250, 273
PshAI GACNNNNGTC 1 cut(s) 288
PshBI ATTAAT 1 cut(s) 615
Psp124BI GAGCTC 2 cut(s) 216, 515
PspN4I GGNNCC 2 cut(s) 163, 169
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 3 cut(s) 68, 93, 356
RsaNI GTAC 3 cut(s) 67, 92, 355
SacI GAGCTC 2 cut(s) 216, 515
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 21, 615
SatI GCNGC 2 cut(s) 108, 127
Sau3AI GATC 5 cut(s) 34, 40, 373, 459, 541
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 3 cut(s) 196, 251, 273
SduI GDGCHC 3 cut(s) 216, 325, 515
SetI ASST 9 cut(s) 157, 186, 216, 276, 345, 387, 408, 429, 515
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 3 cut(s) 87, 217, 560
SsiI CCGC 6 cut(s) 98, 119, 127, 147, 449, 489
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 2 cut(s) 216, 515
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 282, 325, 497, 524
TasI AATT 3 cut(s) 87, 217, 560
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 2 cut(s) 21, 615
Tru9I TTAA 2 cut(s) 21, 615
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 393, 647
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 256
VspI ATTAAT 1 cut(s) 615
XapI RAATTY 1 cut(s) 560
XbaI TCTAGA 1 cut(s) 208
XceI RCATGY 1 cut(s) 598
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.