Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013371

Physical Location & Seq

Genomic Coordinates Forward (+)

9040985 .. 9046783

Gene Structure 5799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3570 bp

ATGGAAGAATATCCAGAGGAAATGCGGAGTCCACCGGTGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCCCTCGACCCTCCGATCAACACCTTGGCCTTGCCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTCCTCCCAAGCCCAATCCCGCCGACTCCTCCTCCTCCGCCGCCGCCGCCGCCTCTCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGGGTCTCTGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAAATCGACAATCTCAAGGGGCTCATCCGCGGCCGGAGCATCAAATTGGTCATCGTCGTCGTCAACTCCCACTCCACTGAAGAAATCTCTGAAGATCAAATGGTTGCGGTGAGGAAACGAGCTGAAGTAGATGCCAAGTATCTTCTCACGTTTTACACCGGCGAAGATTCTCAGCTTAAGCAATCTCTGCATAGATTGGGAACTGTATTTGCCGAGCTAGCCGGCATGTATTACAGAGATGAAGGAAGAAGGATTAAATTGCGCATTGAGAGGAAGAGTTCTGGTCCTACTGACTTGAACATTCGATATTCCTTCAAAGTTGCTGTGTATGCGGAGTTCAGAAGAGACTGGGTGGAAGCTTTGAGGTTTTATGAGGATGCTTATCATATGCTACGTGAGGTGATTCCTGGGGTATCAACTAGGTTGTCAGCTATTCAACGGTTAGTGGAGATAAAAACTGTGGCAGAGCAATTGCATTTCAAAATCTCAACTTTGTTATTGCATGGTGGAAAGATTATGGAAGCAGTTATGTGGTTCCGCCAACACAATGCTTCATACAGAAAGCTCAAAGGATCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGAGCAGACAGTTCTTGGTGTTTGCCGAGTTGCTGGAGACAAGTTCAGCAGCCATTCAGAGCATTTCACATCTAACTGCAGGCACTGCAGATAGACCTTTGACTGAGTGGGAGTTTCAGCCAGCTCATTACTATCAGTTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGACTTTGCAGTTTCTATGTCAGAAGGTGAGATTGATTATAGTGCTGAATCTGTGGCACCCTCATCCTATATGGGTCAGTTTGCTCGATTGATTGAACAAGGAGATGCATTTGTCATGCAGCCCCTTACTGATGAAGAGTATATGCGTTATGCAATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTCAAAAAATCTTGTGAATCTTACAATAATCTAAAAGTCAGGAGAATGGCTTCATTTTGTGAGTTCCAGATGGCCAGAGAATATTATGCTGCAGATGATTTTAACAACGCCAAACTTCTTTTTGATGACATTGCAAGTCTATACAGGCAAGAGGGATGGGTCACTTTGCTGTGGGAGGTATTAGGTTACTTGCGTGAAGGTTCAAGGAAACACAGCAAAGTTAAAGAATTTATAGAGTACTCCTTTGAGATGGCTGCACTCCCTATATCAGCTGATACTGGGATCCAGTCTTTTAGATTTGAAGAATCTGGTCCAGCTGGGCCTGCTACCCTCCAACAAAGAGAAACAATACATAAAGAAGTTTTTGGGCTTGTTAGTGAAAAACTGGGGTTGGCATCTACTGAAAACGGTGATGATGTCAAAGTAAGCGGCACCAATCCACTTCACCTTGAAATTGATCTCGTCAGTCCCCTTAGATTGGTACTCCTTGCTTCAGTTGCTTTTCATGAACAAATAATCAAGCCTGGCTCATCCACATTGGTTACACTGTCACTCTTATCACAGTTACCACTTAATTTTGAGATTGATCAATTAGAAGTCCAGTTCAATCAGTCTCATTGTAACTTTGTGATCATGGATGCCCAAAAGCCTCATGTAGCTTCCTCGACTGATGGTCAATCAGGTCACCGAAGAGAGACTGCTCCATCTCTGCGACTTTCTACAAACAAATGGCTCCGGTTAACGTATGACATCAAATCGGATCAAAGTGGAAAGCTTGAATGCATATCTATTATTGCCAAAATGGGACCGCACTTTACTATCTGTTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATTTGCCTCTTTGGAAATTTGAAGACCGTGTGGTTACCTATCCAACCAAGGACCCAGCTCTGGCATTCTTCGGTCAGAGAGCAATTCAAGTTGAAGAACCAGACCCGGAAGTGGATCTTACTTTAGGTGCTTCTGGCCCTGCATTAATTGGAGAGAGCTTCATAGTACCTGTTACTGTCACATCCAAGGGACATGAGGTTAATTCGGGTGAGTTGAAGATCAATCTGGTGGATGTAAGGGGAGGTGGTTTGTTTAGTCCAAGGGATGCAGAACTATCTGCGGATAGTCATCATGTTGAACTTCTTGGTATATCTGGATCAGAAGGAGAAGATGAATCCCAATTGGATACCGATGAAATTAAGAAAATTCAAAAGTCTTTTGGATTGGTTTCAGTTCCTAATCTCAAAAGTGGAGACTCATGGTCATGCAAATTGGAAATCAAGTGGTATAGACCCAAACCAGTTATGCTGTATGTATCACTGGGTTATTCTCCACATAATAATGGATCAAACACACAACAAGTTAATGTGCACAAGAGCTTGCAGATTGAAGGAAAGAATGCAATCTCAATTAGCCATCGCCTTATGCTTCCATTCCGCAGGTACCCGTTGTTGCTTTCTAGGACAAAACCAGTTCCTGATTCTGATCAGTCGGTGTCAATGCCTTTAAACGAAACAAGTGTACTCATTGTTAGTGCTACGAATTGCTCAGAGGTGCCACTTCAGTTACTATCATTATCTATTGAAAGAGATAATGATGACACTGAAAGGTCATGTTCTTTGCATGGAGGTGAGGACCTTTTAAACCCTGCCCTTCTTGTTCCAGGAGAGAAGTTTAAGAAGGTGTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTTATATTAGGTAATGTGTGTCTTAGATGGAGAAGGAATTCTGGGACTAGAGAACAAGCTGGTTCTGCGGCTCCAGTTATGACTAACCACAAACTTCCTGATGTGAATCTGGAATCATCACCTCTTGTTGTGAGTTTGGAGTGTCCTCCTTACGCAATCCTTGGCGATCCTTTCACATATTTTGTTAAAATTCAGAACCAGACAGAACTGCTTCAAGAGGCCAAAATTTTCCTGGCTGATGCTCAAAGTTTTGTAATATCTGGGTCTCACAGTGACACGGTATATATTCTTCCAAAATCTGAGCACATCATCAGTTACAAGCTTGTCCCGCTTTCCTCAGGGGAACAACAGCTACCCAGATTCACTTTAACCGCAGTTAGATATTCCACTGGGTTTCAGCCTTCAGTTGCTGCATCTACTATTTTTGTTTTCCCCTCTCAGCCTCATTTTAAGATGGTTGCTGTGGGAGACGACAGGAAGGAATCAGTGGTGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

1189

Amino Acids

132.66

Weight (kDa)

5.79

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Foie-gras_1	PF11817	264 - 531	4.8e-67	Foie gras liver health family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18550 AT4G36740 AT4G36740
fragaria_vesca	FvH4_1g13930 FvH4_1g13930
malus_domestica	MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica	Prupe.7G149700_v2.0.a1
pyrus_communis	pycom02g12010
rosa_chinensis	RchiOBHm_Chr2g0102221
rosa_laevigata	RLG00000017139
rosa_multiflora	Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii	Rroxscaffold_2G00140640
rosa_rugosa	Rorug02G0105900
rosa_samantha	Rh2AG153800 Rh2CG159400
rosa_wichuraiana	Rw2G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	2781
Acc65I	GGTACC	1 cut(s)	2793
AccB1I	GGYRCC	4 cut(s)	1189, 1766, 2793, 2905
AccII	CGCG	2 cut(s)	246, 381
AclWI	GGATC	9 cut(s)	315, 931, 1612, 1625, 2103, 2313, 2515, 2704, 3230
AcoI	YGGCCR	2 cut(s)	382, 1407
AcsI	RAATTY	8 cut(s)	234, 1562, 2207, 2556, 3058, 3106, 3258, 3294
AcuI	CTGAAG	7 cut(s)	450, 462, 495, 1314, 1812, 2897, 3456
AfaI	GTAC	6 cut(s)	1574, 1818, 2358, 2795, 2874, 3038
AfiI	CCNNNNNNNGG	6 cut(s)	145, 230, 309, 1813, 2251, 2302
AflII	CTTAAG	1 cut(s)	527
AgeI	ACCGGT	1 cut(s)	34
AhdI	GACNNNNNGTC	2 cut(s)	2007, 2611
AjnI	CCWGG	4 cut(s)	757, 1858, 3013, 3300
Alw21I	GWGCWC	4 cut(s)	72, 345, 2724, 3375
Alw44I	GTGCAC	1 cut(s)	2720
AlwI	GGATC	9 cut(s)	315, 931, 1612, 1625, 2103, 2313, 2515, 2704, 3230
AlwNI	CAGNNNCTG	3 cut(s)	1043, 2828, 3479
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	7 cut(s)	126, 327, 382, 1407, 1655, 2326, 3288
ApaLI	GTGCAC	1 cut(s)	2720
ApeKI	GCWGC	7 cut(s)	60, 1007, 1100, 1252, 1424, 1589, 3479
ApoI	RAATTY	8 cut(s)	234, 1562, 2207, 2556, 3058, 3106, 3258, 3294
AseI	ATTAAT	1 cut(s)	2336
AsiGI	ACCGGT	1 cut(s)	34
Asp700I	GAANNNNTTC	3 cut(s)	1384, 3106, 3279
Asp718I	GGTACC	1 cut(s)	2793
AspLEI	GCGC	2 cut(s)	246, 615
AspS9I	GGNCC	9 cut(s)	136, 328, 635, 1646, 1655, 2141, 2242, 2327, 2986
AsuC2I	CCSGG	2 cut(s)	326, 2297
AsuNHI	GCTAGC	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	6 cut(s)	136, 635, 1646, 2141, 2242, 2986
AxyI	CCTNAGG	1 cut(s)	3406
BaeGI	GKGCMC	1 cut(s)	2724
BalI	TGGCCA	1 cut(s)	1409
BamHI	GGATCC	1 cut(s)	1617
BanI	GGYRCC	4 cut(s)	1189, 1766, 2793, 2905
BanII	GRGCYC	3 cut(s)	72, 345, 375
BarI	GAAGNNNNNNTAC	2 cut(s)	3342, 3374
BbsI	GAAGAC	1 cut(s)	2220
Bbv12I	GWGCWC	4 cut(s)	72, 345, 2724, 3375
BbvI	GCAGC	7 cut(s)	47, 1019, 1087, 1264, 1411, 1576, 3466
BccI	CCATC	8 cut(s)	1399, 1485, 1579, 2000, 2047, 2775, 3090, 3517
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	4 cut(s)	759, 1860, 3015, 3302
BciVI	GTATCC	1 cut(s)	2530
BclI	TGATCA	3 cut(s)	1921, 1965, 2836
BcnI	CCSGG	2 cut(s)	326, 2297
BfaI	CTAG	4 cut(s)	569, 771, 2811, 3117
BfmI	CTRYAG	3 cut(s)	1035, 1044, 1425
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	2781
BfuI	GTATCC	1 cut(s)	2530
BglII	AGATCT	1 cut(s)	1124
BmcAI	AGTACT	1 cut(s)	1574
Bme1390I	CCNGG	6 cut(s)	326, 759, 1860, 2297, 3015, 3302
Bme18I	GGWCC	6 cut(s)	136, 635, 1646, 2141, 2242, 2986
BmeRI	GACNNNNNGTC	2 cut(s)	2007, 2611
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	9 cut(s)	136, 328, 635, 1646, 1655, 2141, 2242, 2327, 2986
BmrFI	CCNGG	6 cut(s)	326, 759, 1860, 2297, 3015, 3302
BmrI	ACTGGG	7 cut(s)	325, 709, 958, 1623, 1730, 2681, 3468
BmsI	GCATC	9 cut(s)	399, 472, 718, 1228, 1739, 1963, 2446, 3298, 3491
BmtI	GCTAGC	1 cut(s)	572
BmuI	ACTGGG	7 cut(s)	325, 709, 958, 1623, 1730, 2681, 3468
BpiI	GAAGAC	1 cut(s)	2220
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 332, 364
BpmI	CTGGAG	2 cut(s)	1013, 3126
BpuEI	CTTGAG	2 cut(s)	242, 350
BpuMI	CCSGG	2 cut(s)	326, 2297
BsaAI	YACGTR	1 cut(s)	746
BsaBI	GATNNNNATC	4 cut(s)	732, 2478, 2835, 3174
BsaI	GGTCTC	4 cut(s)	52, 154, 319, 3339
BsaJI	CCNNGG	9 cut(s)	123, 144, 303, 379, 758, 2238, 2376, 2450, 3229
BsaWI	WCCGGW	2 cut(s)	34, 2070
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 179, 209, 407, 437
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 230, 309, 1813, 2251, 2302
Bse118I	RCCGGY	3 cut(s)	34, 509, 572
Bse21I	CCTNAGG	1 cut(s)	3406
Bse3DI	GCAATG	1 cut(s)	1464
Bse8I	GATNNNNATC	4 cut(s)	732, 2478, 2835, 3174
BseBI	CCWGG	4 cut(s)	759, 1860, 3015, 3302
BseDI	CCNNGG	9 cut(s)	123, 144, 303, 379, 758, 2238, 2376, 2450, 3229
BseJI	GATNNNNATC	4 cut(s)	732, 2478, 2835, 3174
BseLI	CCNNNNNNNGG	6 cut(s)	145, 230, 309, 1813, 2251, 2302
BseMI	GCAATG	1 cut(s)	1464
BseMII	CTCAG	8 cut(s)	63, 536, 1053, 2913, 3042, 3360, 3420, 3521
BseRI	GAGGAG	8 cut(s)	146, 156, 181, 184, 187, 210, 213, 292
BseSI	GKGCMC	1 cut(s)	2724
BseX3I	CGGCCG	1 cut(s)	382
BseXI	GCAGC	7 cut(s)	47, 1019, 1087, 1264, 1411, 1576, 3466
BseYI	CCCAGC	2 cut(s)	1652, 2245
BsgI	GTGCAG	1 cut(s)	1575
Bsh1236I	CGCG	2 cut(s)	246, 381
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	7 cut(s)	128, 329, 384, 1409, 1657, 2328, 3290
BshNI	GGYRCC	4 cut(s)	1189, 1766, 2793, 2905
BshTI	ACCGGT	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	4 cut(s)	72, 345, 2724, 3375
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	9 cut(s)	35, 134, 231, 326, 385, 510, 573, 2071, 2297
BslFI	GGGAC	6 cut(s)	260, 1788, 2154, 2394, 3127, 3380
BslI	CCNNNNNNNGG	6 cut(s)	145, 230, 309, 1813, 2251, 2302
BsmBI	CGTCTC	1 cut(s)	3531
BsmFI	GGGAC	6 cut(s)	260, 1788, 2154, 2394, 3127, 3380
BsmI	GAATGC	3 cut(s)	2120, 2255, 2755
BsnI	GGCC	7 cut(s)	128, 329, 384, 1409, 1657, 2328, 3290
Bso31I	GGTCTC	4 cut(s)	52, 154, 319, 3339
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	5 cut(s)	72, 345, 375, 2724, 3375
Bsp1407I	TGTACA	1 cut(s)	3036
BspANI	GGCC	7 cut(s)	128, 329, 384, 1409, 1657, 2328, 3290
BspCNI	CTCAG	8 cut(s)	62, 535, 1054, 2912, 3043, 3361, 3419, 3520
BspFNI	CGCG	2 cut(s)	246, 381
BspHI	TCATGA	1 cut(s)	1840
BspMAI	CTGCAG	3 cut(s)	1039, 1048, 1429
BspMI	ACCTGC	1 cut(s)	2781
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	9 cut(s)	315, 931, 1612, 1625, 2103, 2313, 2515, 2704, 3230
BspT107I	GGYRCC	4 cut(s)	1189, 1766, 2793, 2905
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	4 cut(s)	52, 154, 319, 3339
BsrDI	GCAATG	1 cut(s)	1464
BsrFI	RCCGGY	3 cut(s)	34, 509, 572
BsrGI	TGTACA	1 cut(s)	3036
BssAI	RCCGGY	3 cut(s)	34, 509, 572
BssECI	CCNNGG	9 cut(s)	123, 144, 303, 379, 758, 2238, 2376, 2450, 3229
BssT1I	CCWWGG	6 cut(s)	123, 144, 2238, 2376, 2450, 3229
Bst2UI	CCWGG	4 cut(s)	759, 1860, 3015, 3302
Bst6I	CTCTTC	5 cut(s)	620, 688, 1115, 1263, 2020
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	2 cut(s)	538, 1043
BstAUI	TGTACA	1 cut(s)	3036
BstBAI	YACGTR	1 cut(s)	746
BstC8I	GCNNGC	6 cut(s)	570, 574, 1039, 1080, 1659, 2732
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	2 cut(s)	2018, 2224
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstFNI	CGCG	2 cut(s)	246, 381
BstHHI	GCGC	2 cut(s)	246, 615
BstMCI	CGRYCG	1 cut(s)	385
BstNI	CCWGG	4 cut(s)	759, 1860, 3015, 3302
BstNSI	RCATGY	1 cut(s)	580
BstPI	GGTNACC	2 cut(s)	2018, 2224
BstSCI	CCNGG	6 cut(s)	324, 757, 1858, 2295, 3013, 3300
BstSFI	CTRYAG	3 cut(s)	1035, 1044, 1425
BstSLI	GKGCMC	1 cut(s)	2724
BstUI	CGCG	2 cut(s)	246, 381
BstV1I	GCAGC	7 cut(s)	47, 1019, 1087, 1264, 1411, 1576, 3466
BstV2I	GAAGAC	1 cut(s)	2220
BstX2I	RGATCY	3 cut(s)	1124, 1617, 2305
BstYI	RGATCY	3 cut(s)	1124, 1617, 2305
BstZI	CGGCCG	1 cut(s)	382
Bsu36I	CCTNAGG	1 cut(s)	3406
BsuI	GTATCC	1 cut(s)	2530
BsuRI	GGCC	7 cut(s)	128, 329, 384, 1409, 1657, 2328, 3290
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	2753
BtsI	GCAGTG	1 cut(s)	1041
BveI	ACCTGC	1 cut(s)	2781
Cac8I	GCNNGC	6 cut(s)	570, 574, 1039, 1080, 1659, 2732
CaiI	CAGNNNCTG	3 cut(s)	1043, 2828, 3479
CciI	TCATGA	1 cut(s)	1840
CfoI	GCGC	2 cut(s)	246, 615
Cfr10I	RCCGGY	3 cut(s)	34, 509, 572
Cfr13I	GGNCC	9 cut(s)	136, 328, 635, 1646, 1655, 2141, 2242, 2327, 2986
Cfr42I	CCGCGG	1 cut(s)	382
Csp6I	GTAC	6 cut(s)	1573, 1817, 2357, 2794, 2873, 3037
CspAI	ACCGGT	1 cut(s)	34
CviQI	GTAC	6 cut(s)	1573, 1817, 2357, 2794, 2873, 3037
DraI	TTTAAA	2 cut(s)	2859, 2994
DriI	GACNNNNNGTC	2 cut(s)	2007, 2611
EaeI	YGGCCR	2 cut(s)	382, 1407
EagI	CGGCCG	1 cut(s)	382
Eam1104I	CTCTTC	5 cut(s)	620, 688, 1115, 1263, 2020
Eam1105I	GACNNNNNGTC	2 cut(s)	2007, 2611
EarI	CTCTTC	5 cut(s)	620, 688, 1115, 1263, 2020
EciI	GGCGGA	2 cut(s)	190, 878
Ecl136II	GAGCTC	2 cut(s)	70, 343
EclXI	CGGCCG	1 cut(s)	382
Eco130I	CCWWGG	6 cut(s)	123, 144, 2238, 2376, 2450, 3229
Eco24I	GRGCYC	3 cut(s)	72, 345, 375
Eco31I	GGTCTC	4 cut(s)	52, 154, 319, 3339
Eco47I	GGWCC	6 cut(s)	136, 635, 1646, 2141, 2242, 2986
Eco52I	CGGCCG	1 cut(s)	382
Eco53kI	GAGCTC	2 cut(s)	70, 343
Eco57I	CTGAAG	7 cut(s)	450, 462, 495, 1314, 1812, 2897, 3456
Eco81I	CCTNAGG	1 cut(s)	3406
Eco88I	CYCGRG	1 cut(s)	338
Eco91I	GGTNACC	2 cut(s)	2018, 2224
EcoICRI	GAGCTC	2 cut(s)	70, 343
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	2242, 2986
EcoO65I	GGTNACC	2 cut(s)	2018, 2224
EcoRI	GAATTC	2 cut(s)	3058, 3106
EcoRII	CCWGG	4 cut(s)	757, 1858, 3013, 3300
EcoT14I	CCWWGG	6 cut(s)	123, 144, 2238, 2376, 2450, 3229
EcoT22I	ATGCAT	2 cut(s)	1243, 2120
EcoT38I	GRGCYC	3 cut(s)	72, 345, 375
ErhI	CCWWGG	6 cut(s)	123, 144, 2238, 2376, 2450, 3229
Esp3I	CGTCTC	1 cut(s)	3531
FalI	AAGNNNNNCTT	4 cut(s)	2164, 2196, 2292, 2324
FaqI	GGGAC	6 cut(s)	260, 1788, 2154, 2394, 3127, 3380
FauI	CCCGC	4 cut(s)	190, 235, 286, 3405
FauNDI	CATATG	1 cut(s)	738
FbaI	TGATCA	3 cut(s)	1921, 1965, 2836
FriOI	GRGCYC	3 cut(s)	72, 345, 375
FspBI	CTAG	4 cut(s)	569, 771, 2811, 3117
FspI	TGCGCA	1 cut(s)	614
GlaI	GCGC	2 cut(s)	245, 614
GsaI	CCCAGC	2 cut(s)	1656, 2249
GsuI	CTGGAG	2 cut(s)	1013, 3126
HaeIII	GGCC	7 cut(s)	128, 329, 384, 1409, 1657, 2328, 3290
HapII	CCGG	9 cut(s)	35, 134, 231, 326, 385, 510, 573, 2071, 2297
HhaI	GCGC	2 cut(s)	246, 615
Hin6I	GCGC	2 cut(s)	244, 613
HinP1I	GCGC	2 cut(s)	244, 613
HincII	GTYRAC	2 cut(s)	415, 2076
HindII	GTYRAC	2 cut(s)	415, 2076
HindIII	AAGCTT	4 cut(s)	708, 2108, 3068, 3389
HpaI	GTTAAC	1 cut(s)	2076
HpaII	CCGG	9 cut(s)	35, 134, 231, 326, 385, 510, 573, 2071, 2297
Hpy166II	GTNNAC	7 cut(s)	32, 415, 2076, 2722, 2873, 3037, 3039
Hpy188III	TCNNGA	9 cut(s)	14, 1375, 1402, 1841, 2505, 2828, 3167, 3179, 3284
Hpy8I	GTNNAC	7 cut(s)	32, 415, 2076, 2722, 2873, 3037, 3039
Hpy99I	CGWCG	3 cut(s)	59, 410, 413
HpyCH4IV	ACGT	3 cut(s)	500, 745, 2078
HpySE526I	ACGT	3 cut(s)	500, 745, 2078
HspAI	GCGC	2 cut(s)	244, 613
KpnI	GGTACC	1 cut(s)	2797
KroI	GCCGGC	1 cut(s)	572
KroNI	GCCGGC	1 cut(s)	574
Ksp22I	TGATCA	3 cut(s)	1921, 1965, 2836
KspAI	GTTAAC	1 cut(s)	2076
KspI	CCGCGG	1 cut(s)	382
LmnI	GCTCC	7 cut(s)	67, 75, 353, 387, 2041, 2073, 3145
Lsp1109I	GCAGC	7 cut(s)	47, 1019, 1087, 1264, 1411, 1576, 3466
LweI	GCATC	9 cut(s)	399, 472, 718, 1228, 1739, 1963, 2446, 3298, 3491
MaeI	CTAG	4 cut(s)	569, 771, 2811, 3117
MaeII	ACGT	3 cut(s)	500, 745, 2078
MfeI	CAATTG	2 cut(s)	821, 2531
MflI	RGATCY	3 cut(s)	1124, 1617, 2305
MhlI	GDGCHC	5 cut(s)	72, 345, 375, 2724, 3375
MlsI	TGGCCA	1 cut(s)	1409
MluNI	TGGCCA	1 cut(s)	1409
MlyI	GAGTC	4 cut(s)	37, 49, 182, 2600
MmeI	TCCRAC	2 cut(s)	1693, 2258
Mox20I	TGGCCA	1 cut(s)	1409
Mph1103I	ATGCAT	2 cut(s)	1243, 2120
MroNI	GCCGGC	1 cut(s)	572
MroXI	GAANNNNTTC	3 cut(s)	1384, 3106, 3279
MscI	TGGCCA	1 cut(s)	1409
MslI	CAYNNNNRTG	3 cut(s)	2614, 2691, 2979
Msp20I	TGGCCA	1 cut(s)	1409
MspA1I	CMGCKG	3 cut(s)	381, 1607, 1652
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	9 cut(s)	35, 134, 231, 326, 385, 510, 573, 2071, 2297
MspR9I	CCNGG	6 cut(s)	326, 759, 1860, 2297, 3015, 3302
MunI	CAATTG	2 cut(s)	821, 2531
Mva1269I	GAATGC	3 cut(s)	2120, 2255, 2755
MvaI	CCWGG	4 cut(s)	759, 1860, 3015, 3302
MvnI	CGCG	2 cut(s)	246, 381
NaeI	GCCGGC	1 cut(s)	574
NciI	CCSGG	2 cut(s)	326, 2297
NdeI	CATATG	1 cut(s)	738
NgoMIV	GCCGGC	1 cut(s)	572
NheI	GCTAGC	1 cut(s)	568
NmeAIII	GCCGAG	2 cut(s)	589, 1009
NmuCI	GTSAC	6 cut(s)	1495, 1884, 2018, 2368, 3043, 3341
NsbI	TGCGCA	1 cut(s)	614
NsiI	ATGCAT	2 cut(s)	1243, 2120
NspI	RCATGY	1 cut(s)	580
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	1840
PctI	GAATGC	3 cut(s)	2120, 2255, 2755
PdiI	GCCGGC	1 cut(s)	574
PdmI	GAANNNNTTC	3 cut(s)	1384, 3106, 3279
PfoI	TCCNGGA	1 cut(s)	3013
PinAI	ACCGGT	1 cut(s)	34
PleI	GAGTC	4 cut(s)	36, 48, 182, 2600
PpsI	GAGTC	4 cut(s)	36, 48, 182, 2600
Ppu21I	YACGTR	1 cut(s)	746
PpuMI	RGGWCCY	2 cut(s)	2242, 2986
PshBI	ATTAAT	1 cut(s)	2336
Psp124BI	GAGCTC	2 cut(s)	72, 345
Psp5II	RGGWCCY	2 cut(s)	2242, 2986
Psp6I	CCWGG	4 cut(s)	757, 1858, 3013, 3300
PspEI	GGTNACC	2 cut(s)	2018, 2224
PspFI	CCCAGC	2 cut(s)	1652, 2245
PspGI	CCWGG	4 cut(s)	757, 1858, 3013, 3300
PspPI	GGNCC	9 cut(s)	136, 328, 635, 1646, 1655, 2141, 2242, 2327, 2986
PspPPI	RGGWCCY	2 cut(s)	2242, 2986
PspXI	VCTCGAGB	1 cut(s)	338
PsrI	GAACNNNNNNTAC	4 cut(s)	671, 703, 3405, 3437
PstI	CTGCAG	3 cut(s)	1039, 1048, 1429
PstNI	CAGNNNCTG	3 cut(s)	1043, 2828, 3479
PsuI	RGATCY	3 cut(s)	1124, 1617, 2305
PvuII	CAGCTG	2 cut(s)	1607, 1652
RsaI	GTAC	6 cut(s)	1574, 1818, 2358, 2795, 2874, 3038
RsaNI	GTAC	6 cut(s)	1573, 1817, 2357, 2794, 2873, 3037
RseI	CAYNNNNRTG	3 cut(s)	2614, 2691, 2979
SacI	GAGCTC	2 cut(s)	72, 345
SacII	CCGCGG	1 cut(s)	382
Sau96I	GGNCC	9 cut(s)	136, 328, 635, 1646, 1655, 2141, 2242, 2327, 2986
ScaI	AGTACT	1 cut(s)	1574
SchI	GAGTC	4 cut(s)	37, 49, 182, 2600
ScrFI	CCNGG	6 cut(s)	326, 759, 1860, 2297, 3015, 3302
SduI	GDGCHC	5 cut(s)	72, 345, 375, 2724, 3375
SfaNI	GCATC	9 cut(s)	399, 472, 718, 1228, 1739, 1963, 2446, 3298, 3491
SfcI	CTRYAG	3 cut(s)	1035, 1044, 1425
Sfr274I	CTCGAG	1 cut(s)	338
Sfr303I	CCGCGG	1 cut(s)	382
SgrAI	CRCCGGYG	2 cut(s)	34, 509
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	6 cut(s)	136, 635, 1646, 2141, 2242, 2986
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	2614, 2691, 2979
SmlI	CTYRAG	4 cut(s)	257, 338, 365, 527
SmoI	CTYRAG	4 cut(s)	257, 338, 365, 527
SspI	AATATT	1 cut(s)	1418
SspMI	CTAG	4 cut(s)	569, 771, 2811, 3117
SstI	GAGCTC	2 cut(s)	72, 345
StyD4I	CCNGG	6 cut(s)	324, 757, 1858, 2295, 3013, 3300
StyI	CCWWGG	6 cut(s)	123, 144, 2238, 2376, 2450, 3229
TaiI	ACGT	3 cut(s)	503, 748, 2081
TaqI	TCGA	6 cut(s)	105, 339, 357, 655, 1219, 2000
TaqII	GACCGA	1 cut(s)	2252
TatI	WGTACW	3 cut(s)	1572, 2872, 3036
TauI	GCSGC	8 cut(s)	206, 209, 212, 215, 293, 384, 1767, 3140
TseFI	GTSAC	6 cut(s)	1495, 1884, 2018, 2368, 3043, 3341
TseI	GCWGC	7 cut(s)	60, 1007, 1100, 1252, 1424, 1589, 3479
Tsp45I	GTSAC	6 cut(s)	1495, 1884, 2018, 2368, 3043, 3341
Vha464I	CTTAAG	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	2720
VpaK11BI	GGWCC	6 cut(s)	136, 635, 1646, 2141, 2242, 2986
VspI	ATTAAT	1 cut(s)	2336
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	8 cut(s)	234, 1562, 2207, 2556, 3058, 3106, 3258, 3294
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3298
XhoI	CTCGAG	1 cut(s)	338
XmnI	GAANNNNTTC	3 cut(s)	1384, 3106, 3279
XspI	CTAG	4 cut(s)	569, 771, 2811, 3117
ZrmI	AGTACT	1 cut(s)	1574
Zsp2I	ATGCAT	2 cut(s)	1243, 2120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.