Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013371

Physical Location & Seq

Genomic Coordinates Reverse (-)

17314453 .. 17316441

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAACTACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGGCTTCCGCAGATGGAGGCAACGGTTTGTTTAGAAAGAGGAAGCTGACCGATGAACAAGTGAACATGTTGGAGATGAGTTTTGGGGATGAACACAAACTTGAGTCGGAGAGGAAAGATAGACTTGCGGCAGAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTTGGTTTCAGAACCGTCGCGCACGGTGGAAGAACAAAAGGCTCGAGGAAGAGTACAATAAACTCAAGAACTCACATGATAACGTCGTTGTCGACAAGTGCCGACTTGAATCTGAGGTTATTCAGCTCAAAGAACAACTCTATGATGCAGAGAGGGAAATCCAAAGATTAGCAGAAAGAGTAGAAGGAGGCTCAAGCAACAGTCCAATTTCGTCTTCCGTTTCCGTCGAAGCTAATGAAACGCCATTTTTTGGAGACTATAAAGTCGGAGATGATGGCGATGACTATGATCACTTGTTTTATCCGGTGCCGGAAAATAGTTACATCGATGAAGCGGAATGGATGAGTCTATACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

216

Amino Acids

25.08

Weight (kDa)

5.11

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	57 - 109	1.4e-17	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18550 AT4G36740 AT4G36740
fragaria_vesca	FvH4_1g13930 FvH4_1g13930
malus_domestica	MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica	Prupe.7G149700_v2.0.a1
pyrus_communis	pycom02g12010
rosa_chinensis	RchiOBHm_Chr2g0102221
rosa_laevigata	RLG00000017139
rosa_multiflora	Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii	Rroxscaffold_2G00140640
rosa_rugosa	Rorug02G0105900
rosa_samantha	Rh2AG153800 Rh2CG159400
rosa_wichuraiana	Rw2G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccI	GTMKAC	2 cut(s)	60, 384
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	103, 138, 257, 626
AclWI	GGATC	2 cut(s)	120, 133
AfaI	GTAC	3 cut(s)	50, 75, 347
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	490, 522
AluBI	AGCT	4 cut(s)	175, 265, 418, 524
AluI	AGCT	4 cut(s)	175, 265, 418, 524
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	120, 133
Ama87I	CYCGRG	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	2 cut(s)	122, 498
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	137, 560
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	2 cut(s)	19, 580
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	95, 258
BlsI	GCNGC	2 cut(s)	96, 259
Bme1390I	CCNGG	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	127, 600
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	427
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	122, 498
BpuEI	CTTGAG	3 cut(s)	251, 341, 469
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	22, 223, 639
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	80, 396
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	598
BshVI	ATCGAT	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	596, 602
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	19, 125, 580
BspACI	CCGC	4 cut(s)	103, 138, 257, 626
BspCNI	CTCAG	2 cut(s)	79, 397
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	127, 600
BspPI	GGATC	2 cut(s)	120, 133
BspT107I	GGYRCC	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	19, 125, 580
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	6 cut(s)	13, 48, 155, 308, 318, 494
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	66, 405
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	22, 223, 639
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	3 cut(s)	22, 128, 583
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	19, 125, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	199
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	79
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	2 cut(s)	122, 498
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	618
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	3 cut(s)	22, 223, 639
CfoI	GCGC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	3 cut(s)	49, 74, 346
CviAII	CATG	3 cut(s)	28, 196, 368
CviQI	GTAC	3 cut(s)	49, 74, 346
DdeI	CTNAG	2 cut(s)	66, 405
DpnI	GATC	3 cut(s)	21, 127, 582
DpnII	GATC	3 cut(s)	19, 125, 580
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	3 cut(s)	31, 199, 371
FaiI	YATR	9 cut(s)	29, 197, 369, 435, 552, 579, 643, 647, 649
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	3 cut(s)	27, 195, 367
FbaI	TGATCA	2 cut(s)	19, 580
FblI	GTMKAC	2 cut(s)	60, 384
Fnu4HI	GCNGC	2 cut(s)	95, 258
FokI	GGATG	3 cut(s)	29, 230, 646
Fsp4HI	GCNGC	2 cut(s)	95, 258
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	95, 258
HapII	CCGG	2 cut(s)	596, 602
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	31, 199, 371
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	233, 401, 637
HpaII	CCGG	2 cut(s)	596, 602
Hpy166II	GTNNAC	3 cut(s)	61, 193, 385
Hpy188I	TCNGA	6 cut(s)	24, 69, 238, 303, 406, 560
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	3 cut(s)	61, 193, 385
Hpy99I	CGWCG	3 cut(s)	312, 380, 521
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	6 cut(s)	13, 48, 155, 308, 318, 494
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	66, 405
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	3 cut(s)	31, 199, 371
HspAI	GCGC	1 cut(s)	312
Ksp22I	TGATCA	2 cut(s)	19, 580
Kzo9I	GATC	3 cut(s)	19, 125, 580
LpnPI	CCDG	5 cut(s)	66, 66, 93, 609, 615
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	3 cut(s)	21, 127, 582
MboI	GATC	3 cut(s)	19, 125, 580
MboII	GAAGA	5 cut(s)	124, 127, 334, 353, 498
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	1 cut(s)	498
MlyI	GAGTC	2 cut(s)	242, 646
MmeI	TCCRAC	3 cut(s)	180, 216, 538
MspI	CCGG	2 cut(s)	596, 602
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	3 cut(s)	19, 125, 580
NlaIII	CATG	3 cut(s)	31, 199, 371
NlaIV	GGNNCC	2 cut(s)	127, 600
NspI	RCATGY	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	335
PciI	ACATGT	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	2 cut(s)	96, 259
PleI	GAGTC	2 cut(s)	241, 645
PpsI	GAGTC	2 cut(s)	241, 645
PscI	ACATGT	1 cut(s)	195
PshAI	GACNNNNGTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	127, 600
PspXI	VCTCGAGB	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	3 cut(s)	50, 75, 347
RsaNI	GTAC	3 cut(s)	49, 74, 346
SalI	GTCGAC	1 cut(s)	383
SatI	GCNGC	2 cut(s)	95, 258
Sau3AI	GATC	3 cut(s)	19, 125, 580
SchI	GAGTC	2 cut(s)	242, 646
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	6 cut(s)	177, 267, 378, 411, 420, 526
SfaNI	GCATC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	335
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	4 cut(s)	230, 335, 356, 484
SmoI	CTYRAG	4 cut(s)	230, 335, 356, 484
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	4 cut(s)	103, 138, 257, 626
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	6 cut(s)	13, 48, 155, 308, 318, 494
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	4 cut(s)	336, 384, 519, 618
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	498
TatI	WGTACW	2 cut(s)	73, 345
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	5 cut(s)	17, 198, 234, 543, 636
TspGWI	ACGGA	3 cut(s)	118, 499, 505
Van91I	CCANNNNNTGG	1 cut(s)	542
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	2 cut(s)	60, 384
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.