Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013371

Physical Location & Seq

Genomic Coordinates Forward (+)

16139248 .. 16141220

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACAACCAAGACCAACCACCAAGTTGTTGAAGAAGACGATCATATGCTACTCATTTCTCACTTGTATCCTTCCGATGTCTACACCCAAATTGTACCCCAACAAGGAGCGTCAAAGCCTAAACGACGTCGTAAGAAGAGCAAAAGTGGAGAGGCTGGTGGTGCTGGGCTCAAGAAGAGGAAGCTGACTGCAGAACAAGTGAATCTTCTTGAGCTCAATTTTGGCAACGAACACAAATTGGAGTCTGAGAAGAAGGACCGGCTTGCTTCTGAGCTAGGTCTTGATCCTCGACAGGTTGCTGTCTGGTTCCAGAACCGAAGGGCTCGTTGGAAGAACAAGAAGTTGGAAGAAGAATACTCCAACTTGAAGAAAGAACATGACAGCACTGTTTCTGAGAATCGCAAGCTTGAATCCGAGATGTCGAAGCTCAAGGAGCAAATCTCGGAGGCTGAGAAGGAGATTCGACGGCTCTCAGAGCGCGTAGACCATGGCGGCTCGAGCAACAGTCCAAGCTCCTCACTCTCTATGGACGCCATTGATCCTCCATTTTTAGGAGAGTTTGGGGTGGAGGAGTACGATGATGTTTTTTACATGCCCCAGAACAATTACATTCATGGCATGGAATGGATGAACCTGTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

215

Amino Acids

24.77

Weight (kDa)

6.41

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18550 AT4G36740 AT4G36740
fragaria_vesca	FvH4_1g13930 FvH4_1g13930
malus_domestica	MD02G1152500.v1.1 MD15G1266900.v1.1
prunus_persica	Prupe.7G149700_v2.0.a1
pyrus_communis	pycom02g12010
rosa_chinensis	RchiOBHm_Chr2g0102221
rosa_laevigata	RLG00000017139
rosa_multiflora	Rmu_sc0005611.1_g000012 Rmu_sc0006727.1_g000013
rosa_roxburghii	Rroxscaffold_2G00140640
rosa_rugosa	Rorug02G0105900
rosa_samantha	Rh2AG153800 Rh2CG159400
rosa_wichuraiana	Rw2G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	130
AccI	GTMKAC	2 cut(s)	81, 483
AccII	CGCG	1 cut(s)	480
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	2 cut(s)	278, 533
AcyI	GRCGYC	2 cut(s)	127, 531
AfaI	GTAC	3 cut(s)	96, 575, 638
AfiI	CCNNNNNNNGG	2 cut(s)	104, 551
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	32, 367, 410
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 326, 342, 358
AluBI	AGCT	6 cut(s)	184, 214, 274, 406, 427, 513
AluI	AGCT	6 cut(s)	184, 214, 274, 406, 427, 513
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	278, 533
Ama87I	CYCGRG	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	256
BanII	GRGCYC	3 cut(s)	171, 216, 325
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpuEI	CTTGAG	3 cut(s)	155, 230, 413
BsaHI	GRCGYC	2 cut(s)	127, 531
BsaJI	CCNNGG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 551
Bse118I	RCCGGY	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	104, 551
BseMII	CTCAG	5 cut(s)	237, 261, 384, 441, 486
BseRI	GAGGAG	2 cut(s)	505, 584
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	104, 551
BsoBI	CYCGRG	1 cut(s)	496
Bsp1286I	GDGCHC	3 cut(s)	171, 216, 325
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	3 cut(s)	40, 283, 538
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	1 cut(s)	492
BspCNI	CTCAG	5 cut(s)	238, 262, 385, 442, 485
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	278, 533
BspQI	GCTCTTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	3 cut(s)	40, 283, 538
BssNI	GRCGYC	2 cut(s)	127, 531
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	2 cut(s)	388, 506
Bst6I	CTCTTC	2 cut(s)	131, 170
BstACI	GRCGYC	2 cut(s)	127, 531
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	264, 404
BstDEI	CTNAG	5 cut(s)	246, 270, 393, 450, 472
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	633
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	3 cut(s)	43, 286, 541
BstMBI	GATC	3 cut(s)	40, 283, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 433, 475, 498
BstNSI	RCATGY	2 cut(s)	595, 643
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	264, 404
CfoI	GCGC	1 cut(s)	480
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	2 cut(s)	99, 539
Csp6I	GTAC	3 cut(s)	95, 574, 637
CviAII	CATG	6 cut(s)	377, 488, 592, 614, 619, 640
CviQI	GTAC	3 cut(s)	95, 574, 637
DdeI	CTNAG	5 cut(s)	246, 270, 393, 450, 472
DpnI	GATC	3 cut(s)	42, 285, 540
DpnII	GATC	3 cut(s)	40, 283, 538
Eam1104I	CTCTTC	2 cut(s)	131, 170
EarI	CTCTTC	2 cut(s)	131, 170
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	3 cut(s)	171, 216, 325
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	3 cut(s)	171, 216, 325
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	6 cut(s)	380, 491, 595, 617, 622, 643
FaiI	YATR	9 cut(s)	45, 47, 378, 489, 527, 593, 615, 620, 641
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	6 cut(s)	376, 487, 591, 613, 618, 639
FauNDI	CATATG	1 cut(s)	45
FblI	GTMKAC	2 cut(s)	81, 483
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	1 cut(s)	640
FriOI	GRGCYC	3 cut(s)	171, 216, 325
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	1 cut(s)	493
GsaI	CCCAGC	1 cut(s)	168
HapII	CCGG	1 cut(s)	259
HgaI	GACGC	2 cut(s)	99, 539
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	2 cut(s)	127, 531
Hin1II	CATG	6 cut(s)	380, 491, 595, 617, 622, 643
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	5 cut(s)	202, 242, 397, 410, 460
HpaII	CCGG	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	82, 484
Hpy188I	TCNGA	7 cut(s)	76, 247, 271, 394, 415, 445, 475
Hpy188III	TCNNGA	4 cut(s)	172, 209, 281, 310
Hpy8I	GTNNAC	2 cut(s)	82, 484
Hpy99I	CGWCG	3 cut(s)	129, 132, 468
HpyAV	CCTTC	4 cut(s)	81, 247, 312, 448
HpyCH4III	ACNGT	2 cut(s)	388, 506
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 433, 475, 498
HpyF3I	CTNAG	5 cut(s)	246, 270, 393, 450, 472
HpySE526I	ACGT	1 cut(s)	127
Hsp92I	GRCGYC	2 cut(s)	127, 531
Hsp92II	CATG	6 cut(s)	380, 491, 595, 617, 622, 643
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	40, 283, 538
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	3 cut(s)	107, 433, 518
LpnPI	CCDG	7 cut(s)	141, 150, 272, 278, 289, 323, 611
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	127
MalI	GATC	3 cut(s)	42, 285, 540
MboI	GATC	3 cut(s)	40, 283, 538
MhlI	GDGCHC	3 cut(s)	171, 216, 325
MluCI	AATT	4 cut(s)	90, 217, 236, 604
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	3 cut(s)	308, 324, 384
MnlI	CCTC	7 cut(s)	145, 171, 297, 439, 526, 552, 562
MspI	CCGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	161, 433, 475, 498
NcoI	CCATGG	1 cut(s)	487
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	3 cut(s)	40, 283, 538
NlaIII	CATG	6 cut(s)	380, 491, 595, 617, 622, 643
NlaIV	GGNNCC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	595, 643
PaeR7I	CTCGAG	1 cut(s)	496
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	202, 397, 410, 460
PkrI	GCNGC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	3 cut(s)	96, 575, 638
RsaNI	GTAC	3 cut(s)	95, 574, 637
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	3 cut(s)	40, 283, 538
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	3 cut(s)	171, 216, 325
SfcI	CTRYAG	1 cut(s)	189
Sfr274I	CTCGAG	1 cut(s)	496
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	496
SmlI	CTYRAG	4 cut(s)	170, 209, 428, 496
SmoI	CTYRAG	4 cut(s)	170, 209, 428, 496
Sse9I	AATT	4 cut(s)	90, 217, 236, 604
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	2 cut(s)	388, 506
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	4 cut(s)	289, 422, 463, 497
TasI	AATT	4 cut(s)	90, 217, 236, 604
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	4 cut(s)	202, 397, 410, 460
TscAI	CASTG	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	602, 644
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	2 cut(s)	595, 643
XhoI	CTCGAG	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	81, 483
XspI	CTAG	1 cut(s)	275
ZraI	GACGTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.