Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Forward (+)

8093220 .. 8094823

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCTCCGACCAATAATTACCGAATCTCCGGCGAACCACCGTCTACTACGCCGTCTCATCCACCGCCAAAACCGAAAACAAGGATTCTCTCTCTATTCCTCGTTGGTGTAATCATGTTTTCAATCTTCTTTCTCTTCCTCGTTCTTATCGGTATCGCCTCTGTTCTTATCCTCCCTCTCCTCCTCTCTTCTCTCCATCGTCACCACCGACGTCGTCGTCGTAATCGCCGACAAGAATCCTCAGATGGGTTATCTTCAAGATTCGTGAAAAAGCTTCCTCAATTCAAATTCTCCGAACCTAGCACATACACACGGTACGAGAGCGATTGTGTGGTTTGTTTTGATGGATTCAGACAAGGACAATGGTGTCGGAATCTTCCTGGTTGTGGACACGTGTTTCATCGAAAGTGTGTGGACACTTGGTTGCTCAAAGCCTCGACGTGTCCTATTTGCAGAGCTAGGGTTAGATTGTGGGAGGAAGATCCACAAGAAGGAGAATTATGGAGATGTTTTGGTCATAGAAGAAGTAGTTTGCTAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

181

Amino Acids

21.07

Weight (kDa)

10.07

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	109 - 152	1.2e-13	Ring finger domain
zf-RING_11	PF17123	109 - 138	9.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	110 - 151	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	110 - 152	3e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	110 - 149	7.7e-06	RING-type zinc-finger
zf-rbx1	PF12678	120 - 152	1.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	216, 366
AatII	GACGTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	287
AcvI	CACGTG	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	246, 386, 491
AflIII	ACRYGT	3 cut(s)	391, 393, 440
AgsI	TTSAA	3 cut(s)	123, 258, 286
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	2 cut(s)	274, 458
AluI	AGCT	2 cut(s)	274, 458
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	394
BccI	CCATC	3 cut(s)	204, 239, 338
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	3 cut(s)	300, 459, 536
Bme1390I	CCNGG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 386, 491
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	246, 386, 491
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	170, 173
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	3 cut(s)	246, 386, 491
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	254
BspPI	GGATC	1 cut(s)	476
BssMI	GATC	1 cut(s)	481
BssNI	GRCGYC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	42, 315
Bst6I	CTCTTC	2 cut(s)	140, 193
BstACI	GRCGYC	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	274, 434, 458
CviKI_1	RGCY	3 cut(s)	274, 434, 458
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
DrdI	GACNNNNNNGTC	2 cut(s)	216, 366
DseDI	GACNNNNNNGTC	2 cut(s)	216, 366
Eam1104I	CTCTTC	2 cut(s)	140, 193
EarI	CTCTTC	2 cut(s)	140, 193
Eco72I	CACGTG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	116, 307, 502, 519
FatI	CATG	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	1 cut(s)	45
FspBI	CTAG	3 cut(s)	300, 459, 536
HapII	CCGG	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	6 cut(s)	24, 85, 236, 261, 348, 373
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	45, 389, 415
Hpy188I	TCNGA	5 cut(s)	9, 244, 295, 353, 372
Hpy188III	TCNNGA	2 cut(s)	258, 265
Hpy8I	GTNNAC	3 cut(s)	45, 389, 415
Hpy99I	CGWCG	5 cut(s)	213, 216, 219, 222, 442
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	42, 315
HpyCH4IV	ACGT	3 cut(s)	211, 393, 440
HpyCH4V	TGCA	1 cut(s)	453
HpyF3I	CTNAG	1 cut(s)	241
HpySE526I	ACGT	3 cut(s)	211, 393, 440
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	481
LpnPI	CCDG	3 cut(s)	43, 366, 393
MaeI	CTAG	3 cut(s)	300, 459, 536
MaeII	ACGT	3 cut(s)	211, 393, 440
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	7 cut(s)	118, 127, 180, 246, 368, 491, 534
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	4 cut(s)	16, 281, 287, 497
MmeI	TCCRAC	2 cut(s)	32, 350
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	3 cut(s)	205, 217, 226
PfeI	GAWTC	6 cut(s)	24, 85, 236, 261, 348, 373
PflFI	GACNNNGTC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	379
PspCI	CACGTG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
Sau3AI	GATC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	6 cut(s)	214, 276, 301, 396, 443, 460
Sse9I	AATT	4 cut(s)	16, 281, 287, 497
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	3 cut(s)	300, 459, 536
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	42, 315
TaiI	ACGT	3 cut(s)	214, 396, 443
TaqI	TCGA	2 cut(s)	403, 437
TasI	AATT	4 cut(s)	16, 281, 287, 497
TfiI	GAWTC	6 cut(s)	24, 85, 236, 261, 348, 373
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	389
Tth111I	GACNNNGTC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	44
XspI	CTAG	3 cut(s)	300, 459, 536
ZraI	GACGTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.