Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Reverse (-)

18726903 .. 18730583

Gene Structure 3681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG118200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCCTCCTCATCCTCACCACCACCACCACCACCACCACCATGATCAACCACCGCAACCAAAACCCAATCCCAAGCTCCTATCTTCAATCCTCAAAGCCCTCATAATGACCTTCATAACCTCAATCTTCTTCCTCCTCCTCGGCTTCGTCGCCTTCCTCCTCTTCCTCATCCTCGCCGCCGGCGCTCTCCACCGTCGCCGCACCCATATCGACCTCCCCTCATCTGGGTTCTCCCCCAGACACTTCAAGACCCTCCCTCAGTTCCGCTTCCGAACCCAAAACCAAACGGCGTCGTTATCCGACTGCGTCGTCTGCCTGGACGCGTTTCGGGAAGGCCAGTGGTGCCGGAAACTCCCTGCATGTGGTCACCTGTTCCATAGGAGGTGCCTCGACACGTGGCTCGTTAAGGTTTCGGTTTGTCCCATTTGCCGGACACCTGTTCAATTAGGGAACACCGCCTCCGCCGCCGGTGAAGAAGAAGAGGCAAAGCGCTTGTGGGATTTTAATAGGAACACTAATTCAAGGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

177

Amino Acids

20.37

Weight (kDa)

9.83

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	101 - 144	5.1e-13	Ring finger domain
zf-RING_11	PF17123	101 - 130	3.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	102 - 143	3.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	111 - 144	9.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccB1I	GGYRCC	2 cut(s)	342, 384
AccII	CGCG	1 cut(s)	323
AciI	CCGC	7 cut(s)	53, 177, 199, 265, 456, 462, 465
AcvI	CACGTG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	224, 225, 362, 429
AflIII	ACRYGT	2 cut(s)	321, 393
AgsI	TTSAA	4 cut(s)	87, 247, 443, 522
AjnI	CCWGG	1 cut(s)	315
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Aor51HI	AGCGCT	1 cut(s)	491
AoxI	GGCC	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	185, 492
AsuHPI	GGTGA	3 cut(s)	8, 359, 482
BanI	GGYRCC	2 cut(s)	342, 384
BbrPI	CACGTG	1 cut(s)	396
BceAI	ACGGC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	43
BfoI	RGCGCY	2 cut(s)	186, 493
BisI	GCNGC	3 cut(s)	177, 199, 465
BlsI	GCNGC	3 cut(s)	178, 200, 466
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	344, 386
BmrFI	CCNGG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 225, 362, 429
Bse118I	RCCGGY	2 cut(s)	179, 467
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	10, 168
BseLI	CCNNNNNNNGG	4 cut(s)	224, 225, 362, 429
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	3 cut(s)	125, 128, 149
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	2 cut(s)	342, 384
BsiSI	CCGG	4 cut(s)	180, 346, 430, 468
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	4 cut(s)	224, 225, 362, 429
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	7 cut(s)	53, 177, 199, 265, 456, 462, 465
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	344, 386
BspT107I	GGYRCC	2 cut(s)	342, 384
BsrFI	RCCGGY	2 cut(s)	179, 467
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	2 cut(s)	179, 467
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	167, 474
BstACI	GRCGYC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	10, 168
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	2 cut(s)	186, 493
BstHHI	GCGC	2 cut(s)	185, 492
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 312, 342, 464
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	10, 168
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	185, 492
Cfr10I	RCCGGY	2 cut(s)	179, 467
CseI	GACGC	3 cut(s)	279, 295, 329
CviAII	CATG	2 cut(s)	41, 360
CviJI	RGCY	5 cut(s)	76, 98, 144, 336, 400
CviKI_1	RGCY	5 cut(s)	76, 98, 144, 336, 400
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	167, 474
EarI	CTCTTC	2 cut(s)	167, 474
EciI	GGCGGA	1 cut(s)	451
Eco47III	AGCGCT	1 cut(s)	491
Eco72I	CACGTG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	44, 363
FaiI	YATR	6 cut(s)	42, 104, 116, 207, 361, 378
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	40, 359
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	177, 199, 465
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	177, 199, 465
GlaI	GCGC	2 cut(s)	184, 491
GluI	GCNGC	3 cut(s)	177, 199, 465
HaeII	RGCGCY	2 cut(s)	186, 493
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	4 cut(s)	180, 346, 430, 468
HgaI	GACGC	3 cut(s)	279, 295, 329
HhaI	GCGC	2 cut(s)	185, 492
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	44, 363
Hin6I	GCGC	2 cut(s)	183, 490
HinP1I	GCGC	2 cut(s)	183, 490
HpaII	CCGG	4 cut(s)	180, 346, 430, 468
HphI	GGTGA	3 cut(s)	8, 359, 482
Hpy188I	TCNGA	2 cut(s)	272, 301
Hpy188III	TCNNGA	2 cut(s)	247, 329
Hpy99I	CGWCG	4 cut(s)	152, 198, 295, 311
HpyAV	CCTTC	3 cut(s)	121, 163, 326
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 312, 342, 464
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	44, 363
HspAI	GCGC	2 cut(s)	183, 490
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	7 cut(s)	75, 118, 121, 154, 485, 488, 491
MluCI	AATT	2 cut(s)	443, 517
MluI	ACGCGT	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	324
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	2 cut(s)	405, 504
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	4 cut(s)	180, 346, 430, 468
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	4 cut(s)	182, 312, 342, 464
NaeI	GCCGGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	44, 363
NlaIV	GGNNCC	2 cut(s)	344, 386
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	178, 200, 466
PmaCI	CACGTG	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	315
PspCI	CACGTG	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	344, 386
PsyI	GACNNNGTC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	405, 504
SatI	GCNGC	3 cut(s)	177, 199, 465
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	9 cut(s)	78, 113, 122, 216, 372, 386, 398, 411, 439
SgrAI	CRCCGGYG	2 cut(s)	179, 467
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	443, 517
SsiI	CCGC	7 cut(s)	53, 177, 199, 265, 456, 462, 465
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	210, 390
TasI	AATT	2 cut(s)	443, 517
TauI	GCSGC	3 cut(s)	179, 201, 467
Tru1I	TTAA	2 cut(s)	405, 504
Tru9I	TTAA	2 cut(s)	405, 504
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	344
Tth111I	GACNNNGTC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.