Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Forward (+)

32930304 .. 32930933

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1263200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCTCCTCCTCCATCTCCATCTCCATCTCCATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCACCACCCCCAGAGCCATGTAATTCCACAAACACCACCTCCAAAACCCAACCCAAAGCTCCTCTCTCTAATCATCAAGGCCCTGGTGATGACCTTTATAACCTCCCTCTTCTTCCTCTTCCTCGGCTTCGCCGCCACCGTTCTCTTCCCCTTCTTCGCCGCTGGCGCTCTCCACCGCCGCCGCACCCAATCCCCCCATCCCTCATCTGGGTTCTCTCCCAAACATCTCAAGGCTCTCCCCCAATTCCGCTTCAGAGCTGCCCTGCCCCGGCCCCAATCGCAATCGTCGTCCTCGTCGCCGTCGCCGTCGCCGCAGACAGACTGCGTTGTTTGCCTCGACTCGTTCCGGGAAGGCCAGTGGTGCAGGAAACTCCCGGCGTGCGATCACGTATTCCATAGGCTCTGCCTGGACACCTGGTTGGTTAAGGTGTCGGCGTGCCCGATTTGCCGAACGCGTGTAAGGTTAGATTACGGGGACACAGAGTCGGTGGTTGATTTGGAAGGAGAAGAGGAAGCAAAGTACTTGTGGAATTTTAATAGAAACAACAATGGTTTGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

210

Amino Acids

23.25

Weight (kDa)

9.53

Isoelectric Point (pI)

88.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	129 - 172	5.6e-12	Ring finger domain
zf-RING_11	PF17123	129 - 158	1.6e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	130 - 171	5.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	132 - 172	5.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccII	CGCG	1 cut(s)	520
AciI	CCGC	7 cut(s)	198, 225, 241, 244, 247, 313, 377
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	272, 273, 333
AflIII	ACRYGT	1 cut(s)	518
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	3 cut(s)	147, 471, 479
AluBI	AGCT	2 cut(s)	124, 323
AluI	AGCT	2 cut(s)	124, 323
AoxI	GGCC	3 cut(s)	144, 335, 418
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	145, 336
AsuC2I	CCSGG	3 cut(s)	334, 413, 440
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	5 cut(s)	22, 28, 34, 40, 270
BceAI	ACGGC	2 cut(s)	349, 355
BciT130I	CCWGG	3 cut(s)	149, 473, 481
BcnI	CCSGG	3 cut(s)	334, 413, 440
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	6 cut(s)	198, 225, 244, 247, 324, 377
BlsI	GCNGC	6 cut(s)	199, 226, 245, 248, 325, 378
BmcAI	AGTACT	1 cut(s)	587
Bme1390I	CCNGG	6 cut(s)	149, 334, 413, 440, 473, 481
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	145, 336
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	6 cut(s)	149, 334, 413, 440, 473, 481
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	3 cut(s)	334, 413, 440
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	147, 187, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 273, 333
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	149, 473, 481
BseDI	CCNNGG	3 cut(s)	147, 187, 332
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	272, 273, 333
BseNI	ACTGG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	3 cut(s)	146, 337, 420
BsiSI	CCGG	3 cut(s)	334, 412, 440
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	272, 273, 333
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	3 cut(s)	146, 337, 420
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	7 cut(s)	198, 225, 241, 244, 247, 313, 377
BspANI	GGCC	3 cut(s)	146, 337, 420
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	147, 187, 332
BssMI	GATC	1 cut(s)	448
Bst2UI	CCWGG	3 cut(s)	149, 473, 481
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	4 cut(s)	179, 188, 215, 567
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	3 cut(s)	229, 445, 502
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 343, 376, 396, 426, 510
BstNI	CCWGG	3 cut(s)	149, 473, 481
BstSCI	CCNGG	6 cut(s)	147, 332, 411, 438, 471, 479
BstSLI	GKGCMC	1 cut(s)	506
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	146, 337, 420
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	3 cut(s)	229, 445, 502
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	145, 336
CsiI	ACCWGGT	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	9 cut(s)	81, 124, 146, 192, 299, 323, 337, 420, 466
CviKI_1	RGCY	9 cut(s)	81, 124, 146, 192, 299, 323, 337, 420, 466
CviQI	GTAC	1 cut(s)	586
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DriI	GACNNNNNGTC	1 cut(s)	547
Eam1104I	CTCTTC	4 cut(s)	179, 188, 215, 567
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	4 cut(s)	179, 188, 215, 567
Eco57I	CTGAAG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	3 cut(s)	147, 471, 479
FaeI	CATG	1 cut(s)	86
FaiI	YATR	3 cut(s)	84, 164, 462
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	6 cut(s)	198, 225, 244, 247, 324, 377
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	6 cut(s)	198, 225, 244, 247, 324, 377
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	6 cut(s)	198, 225, 244, 247, 324, 377
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	146, 337, 420
HapII	CCGG	3 cut(s)	334, 412, 440
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	404, 548
HpaII	CCGG	3 cut(s)	334, 412, 440
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	320
Hpy99I	CGWCG	4 cut(s)	355, 364, 370, 376
HpyAV	CCTTC	3 cut(s)	226, 410, 560
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 343, 376, 396, 426, 510
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	1 cut(s)	310
MabI	ACCWGGT	1 cut(s)	479
MaeII	ACGT	1 cut(s)	453
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	6 cut(s)	166, 169, 175, 202, 211, 584
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	3 cut(s)	87, 308, 595
MluI	ACGCGT	1 cut(s)	518
MlyI	GAGTC	2 cut(s)	398, 557
MseI	TTAA	2 cut(s)	489, 600
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	3 cut(s)	334, 412, 440
MspR9I	CCNGG	6 cut(s)	149, 334, 413, 440, 473, 481
MvaI	CCWGG	3 cut(s)	149, 473, 481
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	6 cut(s)	230, 343, 376, 396, 426, 510
NciI	CCSGG	3 cut(s)	334, 413, 440
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	338
NmeAIII	GCCGAG	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	5 cut(s)	201, 350, 356, 368, 503
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	6 cut(s)	199, 226, 245, 248, 325, 378
PleI	GAGTC	2 cut(s)	398, 556
PpsI	GAGTC	2 cut(s)	398, 556
Ppu21I	YACGTR	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	3 cut(s)	147, 471, 479
PspGI	CCWGG	3 cut(s)	147, 471, 479
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	145, 336
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	2 cut(s)	489, 600
SatI	GCNGC	6 cut(s)	198, 225, 244, 247, 324, 377
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	145, 336
ScaI	AGTACT	1 cut(s)	587
SchI	GAGTC	2 cut(s)	398, 557
ScrFI	CCNGG	6 cut(s)	149, 334, 413, 440, 473, 481
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	9 cut(s)	106, 126, 161, 170, 325, 456, 482, 495, 530
SexAI	ACCWGGT	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	87, 308, 595
SsiI	CCGC	7 cut(s)	198, 225, 241, 244, 247, 313, 377
StyD4I	CCNGG	6 cut(s)	147, 332, 411, 438, 471, 479
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	87, 308, 595
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	5 cut(s)	200, 227, 246, 249, 379
Tru1I	TTAA	2 cut(s)	489, 600
Tru9I	TTAA	2 cut(s)	489, 600
TscAI	CASTG	1 cut(s)	428
TseI	GCWGC	1 cut(s)	323
TspRI	CASTG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.