Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Forward (+)

9202924 .. 9207552

Gene Structure 4629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCCTCCTCCTCCCCACCACCACCATGATCAGCCACCGCCCCCAAAACCCAATCCAAAGGTCCTATCTTCAATCCTAAAAGCCCTCATAATGACCTTCATAACCTCCATCTTCTTCCTCATTCTCGGCTTCGTTGCCTTCCTCCTCTTCCTCATCCTCGCCGCCGGCGCTTTCCACCGTCGCCGCACCCAGTCCGACCTCCCCTCATCTGGGTTCTCCCCCAGACACTTCAAGACCCTCCCCCAGTTCCGCTTCCGAACCCAGAACCAAACGGTGTCGTCCGACTGTGTGGTCTGCCTGGACGCCTTTCGGGAAGGCCAGTGGTGCCGGAAACTCCCTGCTTGCGGTCACCTGTTCCACAGGAGGTGTCTCGACACGTGGCTCGTTAAGGTCTCGGCTTGTCCCATTTGCCGGACACCTGTTTTAGGTAACGCCTCCGCCGCCGGTTTAGAAGAAGAAGAGGCGAAGCGGTTGTGGAATTTTAATAGGAACACGAATTCAAGGAGTGCGGTTGATGGGGAACAGCCTTCTTTCAGAGACTTATTCAACCAGGCATATTCCAAGATTAAGGCCTCCACTATCTTGGGAGATAAAGAACTCCGAAATGGATCAATCACCCTTCTACCAGTATTAAATGAAGACTCGGCTGCTACCGTGCTCACTTGGATGGCCGACACATCTTTTGCAAGTGCAGCAAGACCTGGATACTTGTCACCATTCATCTTCCACCATTCTAATATGTTGAATTTCTCAGGACTTGGAAGCTTCTCAATTGGGTCCAGTAGAGGGGTTTTGGGGAACGATTATTTCGGAGAGTTATTCATAGAAGAAAATTATGACGACGGTAAAAATGTTGGACCGGTTTGGGGTGTGGAGGCCCAAAACCATTTCCCTCTTCTCTTTTTCTTCCCGGTTGCCCTCTTCCCCGACTCTCTCCCGTTGCCCCATTTTCCGGCCGTCCGCCCGCCGCCGTCCGGCCACCATCTGCCGCCGCACCGGTCCCGTTCGGTCGGCCTCCGACCCAGTAACCTCCCTGGACCGGTGACAGCTCCCCTAGTGCCGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

356

Amino Acids

39.34

Weight (kDa)

9.15

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	94 - 138	1.8e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	95 - 138	1.4e-12	Ring finger domain
zf-RING_11	PF17123	95 - 124	9.9e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	96 - 137	5.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	3 cut(s)	669, 954, 976
AcsI	RAATTY	3 cut(s)	478, 496, 745
AcvI	CACGTG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	375
AgeI	ACCGGT	3 cut(s)	859, 996, 1039
AgsI	TTSAA	5 cut(s)	72, 232, 501, 547, 745
AjnI	CCWGG	4 cut(s)	297, 549, 700, 1033
AluBI	AGCT	2 cut(s)	765, 1049
AluI	AGCT	2 cut(s)	765, 1049
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	3 cut(s)	374, 397, 531
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	7 cut(s)	316, 570, 669, 876, 954, 976, 1012
ApeKI	GCWGC	2 cut(s)	647, 692
ApoI	RAATTY	3 cut(s)	478, 496, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AsiGI	ACCGGT	3 cut(s)	859, 996, 1039
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	6 cut(s)	61, 777, 857, 877, 999, 1037
AsuC2I	CCSGG	1 cut(s)	911
AsuHPI	GGTGA	4 cut(s)	341, 607, 705, 1054
AvaII	GGWCC	5 cut(s)	61, 777, 857, 999, 1037
BanI	GGYRCC	1 cut(s)	324
BbrPI	CACGTG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	2 cut(s)	634, 704
BccI	CCATC	4 cut(s)	116, 509, 661, 990
BceAI	ACGGC	3 cut(s)	941, 955, 1048
BciT130I	CCWGG	4 cut(s)	299, 551, 702, 1035
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	911
BcoDI	GTCTC	3 cut(s)	374, 397, 531
BfaI	CTAG	1 cut(s)	1055
BfoI	RGCGCY	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	9 cut(s)	162, 184, 441, 648, 693, 968, 989, 992, 1061
BlsI	GCNGC	9 cut(s)	163, 185, 442, 649, 694, 969, 990, 993, 1062
Bme1390I	CCNGG	5 cut(s)	299, 551, 702, 911, 1035
Bme18I	GGWCC	5 cut(s)	61, 777, 857, 999, 1037
BmgT120I	GGNCC	6 cut(s)	61, 777, 857, 877, 999, 1037
BmiI	GGNNCC	3 cut(s)	326, 778, 1001
BmrFI	CCNGG	5 cut(s)	299, 551, 702, 911, 1035
BmrI	ACTGGG	3 cut(s)	184, 238, 1017
BmuI	ACTGGG	3 cut(s)	184, 238, 1017
BpiI	GAAGAC	1 cut(s)	645
BpuMI	CCSGG	1 cut(s)	911
BsaAI	YACGTR	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	1033
BsaWI	WCCGGW	3 cut(s)	859, 996, 1039
Bse118I	RCCGGY	5 cut(s)	164, 443, 859, 996, 1039
Bse1I	ACTGG	6 cut(s)	190, 244, 319, 626, 780, 1023
BseBI	CCWGG	4 cut(s)	299, 551, 702, 1035
BseDI	CCNNGG	1 cut(s)	1033
BseGI	GGATG	2 cut(s)	153, 672
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	6 cut(s)	190, 244, 319, 626, 780, 1023
BseRI	GAGGAG	1 cut(s)	134
BseX3I	CGGCCG	1 cut(s)	954
BseXI	GCAGC	2 cut(s)	634, 704
BsgI	GTGCAG	1 cut(s)	711
Bsh1285I	CGRYCG	2 cut(s)	957, 1011
BshFI	GGCC	7 cut(s)	318, 572, 671, 878, 956, 978, 1014
BshNI	GGYRCC	1 cut(s)	324
BshTI	ACCGGT	3 cut(s)	859, 996, 1039
BsiEI	CGRYCG	2 cut(s)	957, 1011
BsiHKAI	GWGCWC	1 cut(s)	660
BslFI	GGGAC	2 cut(s)	387, 985
BsmAI	GTCTC	3 cut(s)	374, 397, 531
BsmFI	GGGAC	2 cut(s)	387, 985
BsnI	GGCC	7 cut(s)	318, 572, 671, 878, 956, 978, 1014
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	28, 608
BspANI	GGCC	7 cut(s)	318, 572, 671, 878, 956, 978, 1014
BspCNI	CTCAG	1 cut(s)	764
BspLI	GGNNCC	3 cut(s)	326, 778, 1001
BspPI	GGATC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	397
BsrFI	RCCGGY	5 cut(s)	164, 443, 859, 996, 1039
BsrI	ACTGG	6 cut(s)	190, 244, 319, 626, 780, 1023
BssAI	RCCGGY	5 cut(s)	164, 443, 859, 996, 1039
BssECI	CCNNGG	1 cut(s)	1033
BssMI	GATC	2 cut(s)	28, 608
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	4 cut(s)	299, 551, 702, 1035
Bst4CI	ACNGT	5 cut(s)	179, 274, 287, 655, 845
Bst6I	CTCTTC	4 cut(s)	152, 453, 900, 926
BstACI	GRCGYC	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	166, 343, 965
BstDEI	CTNAG	1 cut(s)	751
BstEII	GGTNACC	1 cut(s)	347
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	153, 672
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	31, 611
BstMAI	GTCTC	3 cut(s)	374, 397, 531
BstMBI	GATC	2 cut(s)	28, 608
BstMCI	CGRYCG	2 cut(s)	957, 1011
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 324, 440, 692
BstNI	CCWGG	4 cut(s)	299, 551, 702, 1035
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	5 cut(s)	297, 549, 700, 909, 1033
BstV1I	GCAGC	2 cut(s)	634, 704
BstV2I	GAAGAC	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstZI	CGGCCG	1 cut(s)	954
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	7 cut(s)	318, 572, 671, 878, 956, 978, 1014
BtsCI	GGATG	2 cut(s)	153, 672
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	166, 343, 965
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	5 cut(s)	164, 443, 859, 996, 1039
Cfr13I	GGNCC	6 cut(s)	61, 777, 857, 877, 999, 1037
CseI	GACGC	1 cut(s)	311
CspAI	ACCGGT	3 cut(s)	859, 996, 1039
CviAII	CATG	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	751
DpnI	GATC	2 cut(s)	30, 610
DpnII	GATC	2 cut(s)	28, 608
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	3 cut(s)	669, 954, 976
EagI	CGGCCG	1 cut(s)	954
Eam1104I	CTCTTC	4 cut(s)	152, 453, 900, 926
EarI	CTCTTC	4 cut(s)	152, 453, 900, 926
EciI	GGCGGA	2 cut(s)	427, 950
EclXI	CGGCCG	1 cut(s)	954
Eco147I	AGGCCT	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	397
Eco47I	GGWCC	5 cut(s)	61, 777, 857, 999, 1037
Eco52I	CGGCCG	1 cut(s)	954
Eco72I	CACGTG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	4 cut(s)	297, 549, 700, 1033
FaeI	CATG	1 cut(s)	29
FaiI	YATR	7 cut(s)	27, 89, 101, 556, 740, 824, 837
FaqI	GGGAC	2 cut(s)	387, 985
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	972
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	9 cut(s)	162, 184, 441, 648, 693, 968, 989, 992, 1061
FokI	GGATG	2 cut(s)	140, 679
Fsp4HI	GCNGC	9 cut(s)	162, 184, 441, 648, 693, 968, 989, 992, 1061
FspBI	CTAG	1 cut(s)	1055
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	9 cut(s)	162, 184, 441, 648, 693, 968, 989, 992, 1061
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	7 cut(s)	318, 572, 671, 878, 956, 978, 1014
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	2 cut(s)	641, 929
HphI	GGTGA	4 cut(s)	341, 607, 705, 1054
Hpy188I	TCNGA	7 cut(s)	196, 257, 283, 536, 602, 812, 1019
Hpy188III	TCNNGA	4 cut(s)	232, 311, 371, 753
Hpy99I	CGWCG	2 cut(s)	183, 845
HpyAV	CCTTC	5 cut(s)	106, 148, 308, 537, 629
HpyCH4III	ACNGT	5 cut(s)	179, 274, 287, 655, 845
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	686, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 324, 440, 692
HpyF3I	CTNAG	1 cut(s)	751
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	28, 608
LmnI	GCTCC	1 cut(s)	1054
Lsp1109I	GCAGC	2 cut(s)	634, 704
MaeI	CTAG	1 cut(s)	1055
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	5 cut(s)	347, 428, 711, 1025, 1042
MalI	GATC	2 cut(s)	30, 610
MboI	GATC	2 cut(s)	28, 608
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	5 cut(s)	478, 496, 745, 771, 832
MlyI	GAGTC	2 cut(s)	635, 923
MmeI	TCCRAC	4 cut(s)	219, 306, 835, 1042
MreI	CGCCGGCG	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	4 cut(s)	387, 483, 567, 632
MslI	CAYNNNNRTG	2 cut(s)	24, 665
MspR9I	CCNGG	5 cut(s)	299, 551, 702, 911, 1035
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	4 cut(s)	299, 551, 702, 1035
MwoI	GCNNNNNNNGC	4 cut(s)	167, 324, 440, 692
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	911
NdeII	GATC	2 cut(s)	28, 608
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	3 cut(s)	326, 778, 1001
NmeAIII	GCCGAG	3 cut(s)	105, 374, 623
NmuCI	GTSAC	3 cut(s)	347, 711, 1042
PceI	AGGCCT	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	166
PinAI	ACCGGT	3 cut(s)	859, 996, 1039
PkrI	GCNGC	9 cut(s)	163, 185, 442, 649, 694, 969, 990, 993, 1062
PleI	GAGTC	2 cut(s)	635, 923
PmaCI	CACGTG	1 cut(s)	378
PmlI	CACGTG	1 cut(s)	378
PpsI	GAGTC	2 cut(s)	635, 923
Ppu21I	YACGTR	1 cut(s)	378
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	4 cut(s)	297, 549, 700, 1033
PspCI	CACGTG	1 cut(s)	378
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	4 cut(s)	297, 549, 700, 1033
PspN4I	GGNNCC	3 cut(s)	326, 778, 1001
PspPI	GGNCC	6 cut(s)	61, 777, 857, 877, 999, 1037
PspPPI	RGGWCCY	1 cut(s)	61
RseI	CAYNNNNRTG	2 cut(s)	24, 665
SaqAI	TTAA	4 cut(s)	387, 483, 567, 632
SatI	GCNGC	9 cut(s)	162, 184, 441, 648, 693, 968, 989, 992, 1061
Sau3AI	GATC	2 cut(s)	28, 608
Sau96I	GGNCC	6 cut(s)	61, 777, 857, 877, 999, 1037
SchI	GAGTC	2 cut(s)	635, 923
ScrFI	CCNGG	5 cut(s)	299, 551, 702, 911, 1035
SduI	GDGCHC	1 cut(s)	660
SgrAI	CRCCGGYG	1 cut(s)	164
SinI	GGWCC	5 cut(s)	61, 777, 857, 999, 1037
SmiMI	CAYNNNNRTG	2 cut(s)	24, 665
Sse9I	AATT	5 cut(s)	478, 496, 745, 771, 832
SseBI	AGGCCT	1 cut(s)	572
SspMI	CTAG	1 cut(s)	1055
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	5 cut(s)	297, 549, 700, 909, 1033
TaaI	ACNGT	5 cut(s)	179, 274, 287, 655, 845
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	372
TaqII	GACCGA	1 cut(s)	997
TasI	AATT	5 cut(s)	478, 496, 745, 771, 832
TauI	GCSGC	7 cut(s)	164, 186, 443, 970, 991, 994, 1063
Tru1I	TTAA	4 cut(s)	387, 483, 567, 632
Tru9I	TTAA	4 cut(s)	387, 483, 567, 632
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	3 cut(s)	347, 711, 1042
TseI	GCWGC	2 cut(s)	647, 692
Tsp45I	GTSAC	3 cut(s)	347, 711, 1042
TspDTI	ATGAA	4 cut(s)	88, 651, 709, 811
TspRI	CASTG	1 cut(s)	326
VpaK11BI	GGWCC	5 cut(s)	61, 777, 857, 999, 1037
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	3 cut(s)	478, 496, 745
XspI	CTAG	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.