Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Reverse (-)

23203208 .. 23203873

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCTCCTCATCCTCACCACCACCACCACCACCACCACCATCATGATCAACCACCGCAACCAAAACCCAATCCCAAGCTCCTATCTTCAATCCTCAAAGCCCTCATAATGACCTTCATAACCTCAATCTTCTTCCTCCTCCTCGGCTTCGTCGCCTTCCTCCTCTTCCTCATCCTCGCCGCCGGCGCTCTCCACCGTCGCCGCACCCAAATCGACCTCCCCTCATCTGGGTTCTCCCCCAGACACTTCAAGACCCTCCCTCAGTTCCGCTTCCGAACCCAAAACCAAACGGCGTCGTTATCCGACTGCGTCGTCTGCCTGGACGCGTTTCGGGAAGGCCAGTGGTGCCGGAAACTCCCTGCATGTGGTCACCTGTTCCATAGGAGGTGCCTCGACACGTGGCTCGTTAAGGTTTCGGTTTGTCCCATTTGCCGGACACCTGTTCAATTAGGGAACACCGCCTCCGCCGCCGGTGAAGAAGAAGAGGCAAAGCGCTTGTGGGATTTTAATAGGAACACTAATTCAAGGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

178

Amino Acids

20.5

Weight (kDa)

9.83

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	102 - 145	5.2e-13	Ring finger domain
zf-RING_11	PF17123	102 - 131	3.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 144	3.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	112 - 145	9.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB1I	GGYRCC	2 cut(s)	345, 387
AccII	CGCG	1 cut(s)	326
AciI	CCGC	7 cut(s)	56, 180, 202, 268, 459, 465, 468
AcvI	CACGTG	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	293
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	4 cut(s)	227, 228, 365, 432
AflIII	ACRYGT	2 cut(s)	324, 396
AgsI	TTSAA	4 cut(s)	90, 250, 446, 525
AjnI	CCWGG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	188, 495
AsuHPI	GGTGA	3 cut(s)	8, 362, 485
BanI	GGYRCC	2 cut(s)	345, 387
BbrPI	CACGTG	1 cut(s)	399
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	46
BfoI	RGCGCY	2 cut(s)	189, 496
BisI	GCNGC	3 cut(s)	180, 202, 468
BlsI	GCNGC	3 cut(s)	181, 203, 469
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	347, 389
BmrFI	CCNGG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 228, 365, 432
Bse118I	RCCGGY	2 cut(s)	182, 470
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	10, 171
BseLI	CCNNNNNNNGG	4 cut(s)	227, 228, 365, 432
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	3 cut(s)	128, 131, 152
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	2 cut(s)	345, 387
BsiSI	CCGG	4 cut(s)	183, 349, 433, 471
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	4 cut(s)	227, 228, 365, 432
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	7 cut(s)	56, 180, 202, 268, 459, 465, 468
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	347, 389
BspT107I	GGYRCC	2 cut(s)	345, 387
BsrFI	RCCGGY	2 cut(s)	182, 470
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	2 cut(s)	182, 470
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	2 cut(s)	170, 477
BstACI	GRCGYC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	261
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	10, 171
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	2 cut(s)	189, 496
BstHHI	GCGC	2 cut(s)	188, 495
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 315, 345, 467
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	366
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	10, 171
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	188, 495
Cfr10I	RCCGGY	2 cut(s)	182, 470
CseI	GACGC	3 cut(s)	282, 298, 332
CviAII	CATG	2 cut(s)	44, 363
CviJI	RGCY	5 cut(s)	79, 101, 147, 339, 403
CviKI_1	RGCY	5 cut(s)	79, 101, 147, 339, 403
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	170, 477
EarI	CTCTTC	2 cut(s)	170, 477
EciI	GGCGGA	1 cut(s)	454
Eco47III	AGCGCT	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	47, 366
FaiI	YATR	5 cut(s)	45, 107, 119, 364, 381
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	2 cut(s)	43, 362
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	180, 202, 468
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	180, 202, 468
GlaI	GCGC	2 cut(s)	187, 494
GluI	GCNGC	3 cut(s)	180, 202, 468
HaeII	RGCGCY	2 cut(s)	189, 496
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	4 cut(s)	183, 349, 433, 471
HgaI	GACGC	3 cut(s)	282, 298, 332
HhaI	GCGC	2 cut(s)	188, 495
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	47, 366
Hin6I	GCGC	2 cut(s)	186, 493
HinP1I	GCGC	2 cut(s)	186, 493
HpaII	CCGG	4 cut(s)	183, 349, 433, 471
HphI	GGTGA	3 cut(s)	8, 362, 485
Hpy188I	TCNGA	2 cut(s)	275, 304
Hpy188III	TCNNGA	3 cut(s)	44, 250, 332
Hpy99I	CGWCG	4 cut(s)	155, 201, 298, 314
HpyAV	CCTTC	3 cut(s)	124, 166, 329
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 315, 345, 467
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	47, 366
HspAI	GCGC	2 cut(s)	186, 493
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	7 cut(s)	78, 121, 124, 157, 488, 491, 494
MluCI	AATT	2 cut(s)	446, 520
MluI	ACGCGT	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	327
MreI	CGCCGGCG	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	2 cut(s)	408, 507
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	4 cut(s)	183, 349, 433, 471
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	185, 315, 345, 467
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	47, 366
NlaIV	GGNNCC	2 cut(s)	347, 389
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	184
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	181, 203, 469
PmaCI	CACGTG	1 cut(s)	399
PmlI	CACGTG	1 cut(s)	399
Ppu21I	YACGTR	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	318
PspCI	CACGTG	1 cut(s)	399
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	347, 389
PsyI	GACNNNGTC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	408, 507
SatI	GCNGC	3 cut(s)	180, 202, 468
Sau3AI	GATC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	9 cut(s)	81, 116, 125, 219, 375, 389, 401, 414, 442
SgrAI	CRCCGGYG	2 cut(s)	182, 470
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	2 cut(s)	446, 520
SsiI	CCGC	7 cut(s)	56, 180, 202, 268, 459, 465, 468
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	213, 393
TasI	AATT	2 cut(s)	446, 520
TauI	GCSGC	3 cut(s)	182, 204, 470
Tru1I	TTAA	2 cut(s)	408, 507
Tru9I	TTAA	2 cut(s)	408, 507
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	308
XceI	RCATGY	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.