Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Reverse (-)

27071318 .. 27075373

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACCTTCATAACCTCAATCTTCTTCCTCCTCCTCGGCTTCGTCGCCTTCCTCCTCTTCCTCATCCTCGCCGCCGGCGCTCTCCACCGTCGCCGCACCCAAATCGACCTCCCCTCATCTGGGTTCTCACCCAGACACTTCAAGACCCTCCCTCAGTTCCGCTTCCGAACCCAAAACCAAACGGCGTCGTCGTCCGACTGCGTCGTCTGCCTGGACGCGTTTCGGGAAGGCCAGTGGTGCCGGAAACTCCCTGCATGCGGTCACCTGTTCCATAGGAGGTGCCTAGACACGTGGCTCGTTAAGGTTTCGGTTTGTCCCATTTGCCGGACTCCTGTTCAATTAGGGAACACCGCCTCCGCCGCCGCTTCTGATGAATTTGGAGGTCTTGGCTATGACCAAAATGGTGATGATCATGATGCTAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

8.8

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	66 - 109	3.4e-13	Ring finger domain
zf-RING_11	PF17123	66 - 95	2.6e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	67 - 108	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	67 - 109	5.5e-07	RING-H2 zinc finger domain
zf-RING_5	PF14634	67 - 110	8.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB1I	GGYRCC	2 cut(s)	237, 279
AccII	CGCG	1 cut(s)	218
AciI	CCGC	8 cut(s)	72, 94, 160, 258, 351, 357, 360, 363
AcsI	RAATTY	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	185
AfiI	CCNNNNNNNGG	4 cut(s)	119, 120, 257, 324
AflIII	ACRYGT	2 cut(s)	216, 288
AgsI	TTSAA	2 cut(s)	142, 338
AjnI	CCWGG	1 cut(s)	210
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	120, 254, 416
BanI	GGYRCC	2 cut(s)	237, 279
BbrPI	CACGTG	1 cut(s)	291
BceAI	ACGGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	1 cut(s)	409
BfaI	CTAG	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	4 cut(s)	72, 94, 360, 363
BlsI	GCNGC	4 cut(s)	73, 95, 361, 364
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	239, 281
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 120, 257, 324
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	4 cut(s)	119, 120, 257, 324
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	3 cut(s)	20, 23, 44
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	2 cut(s)	237, 279
BsiSI	CCGG	3 cut(s)	75, 241, 325
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	4 cut(s)	119, 120, 257, 324
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	8 cut(s)	72, 94, 160, 258, 351, 357, 360, 363
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	239, 281
BspT107I	GGYRCC	2 cut(s)	237, 279
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	409
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	76, 256
BstDEI	CTNAG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 207, 237, 359
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	76, 256
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	3 cut(s)	174, 190, 224
CviAII	CATG	2 cut(s)	255, 413
CviJI	RGCY	4 cut(s)	39, 231, 295, 390
CviKI_1	RGCY	4 cut(s)	39, 231, 295, 390
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	346
Eco72I	CACGTG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	258, 416
FaiI	YATR	5 cut(s)	11, 256, 273, 393, 414
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	254, 412
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	72, 94, 360, 363
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	72, 94, 360, 363
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	72, 94, 360, 363
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	75, 241, 325
HgaI	GACGC	3 cut(s)	174, 190, 224
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	258, 416
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	3 cut(s)	75, 241, 325
HphI	GGTGA	3 cut(s)	120, 254, 416
Hpy188I	TCNGA	3 cut(s)	167, 196, 370
Hpy188III	TCNNGA	3 cut(s)	142, 224, 413
Hpy99I	CGWCG	5 cut(s)	47, 93, 190, 193, 206
HpyAV	CCTTC	3 cut(s)	16, 58, 221
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 207, 237, 359
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	258, 416
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	409
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	3 cut(s)	13, 16, 49
MluCI	AATT	2 cut(s)	338, 374
MluI	ACGCGT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	219
MreI	CGCCGGCG	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	2 cut(s)	300, 427
MspI	CCGG	3 cut(s)	75, 241, 325
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	77, 207, 237, 359
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	409
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	258, 416
NlaIV	GGNNCC	2 cut(s)	239, 281
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	258
PagI	TCATGA	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	73, 95, 361, 364
PleI	GAGTC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	291
PmlI	CACGTG	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	210
PspCI	CACGTG	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	239, 281
PsyI	GACNNNGTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	300, 427
SatI	GCNGC	4 cut(s)	72, 94, 360, 363
Sau3AI	GATC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	9 cut(s)	8, 17, 111, 267, 281, 293, 306, 385, 427
SfaNI	GCATC	1 cut(s)	406
SgrAI	CRCCGGYG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	258
Sse9I	AATT	2 cut(s)	338, 374
SsiI	CCGC	8 cut(s)	72, 94, 160, 258, 351, 357, 360, 363
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	338, 374
TauI	GCSGC	4 cut(s)	74, 96, 362, 365
Tru1I	TTAA	2 cut(s)	300, 427
Tru9I	TTAA	2 cut(s)	300, 427
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	239
Tth111I	GACNNNGTC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	258
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.