Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Reverse (-)

21414691 .. 21416361

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCTCCTCATCCTCACCACCACCACCACCACCACCATGATCAACCACCGCTCCCAAAACCCAATCCCAAGCTCCTATCTTCAATCCTTAAAGCCCTCATAATGACCTTTATAACCTCAATCTTCTTCCTCATCCTCGGCTTCGTCGCCTTCCTCCTCTTCCTCATCCTCGCCGCCGGCGCTCTCCACCGTCGCCGCACCCAATTCGACCTCCCCTCATCTGGGTTCTCCCCCAGACACTTCAAGACCCTCCCTCAGTTCCGCTTCCGAACCCAAAACCAAACGGCGTCGTCGTCCGACTGCGTCGTCTGCCTGGACGCGTTTCGGGAAGGCCAGTGGTGCCGGAAACTCCCTGCATGTGGTCACCTGTTCCATAGGAGGTGCCTCGACACGTGGCTCGTTAAGGTTTCGGTTTGTCCCATTTGCCGGACACCTGTTCAATTTGGGAACACCGCCTCCGCCGCCGGTGAAGAAGAAGAGGCAAAGCGCTTGTGGAATTTTAATAGGAACACTAATTCAAGGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

20.25

Weight (kDa)

10.0

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	100 - 143	5.1e-13	Ring finger domain
zf-RING_11	PF17123	100 - 129	3.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	101 - 142	3.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	101 - 143	7.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	339, 381
AccBSI	CCGCTC	1 cut(s)	52
AccII	CGCG	1 cut(s)	320
AciI	CCGC	7 cut(s)	50, 174, 196, 262, 453, 459, 462
AcsI	RAATTY	1 cut(s)	496
AcvI	CACGTG	1 cut(s)	393
AcyI	GRCGYC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	221, 222, 359, 426
AflIII	ACRYGT	2 cut(s)	318, 390
AgsI	TTSAA	4 cut(s)	84, 244, 440, 519
AjnI	CCWGG	1 cut(s)	312
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	488
AoxI	GGCC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	182, 489
AsuHPI	GGTGA	3 cut(s)	8, 356, 479
BanI	GGYRCC	2 cut(s)	339, 381
BbrPI	CACGTG	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	300
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	40
BfoI	RGCGCY	2 cut(s)	183, 490
BisI	GCNGC	3 cut(s)	174, 196, 462
BlsI	GCNGC	3 cut(s)	175, 197, 463
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	341, 383
BmrFI	CCNGG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	136
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 440, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 222, 359, 426
Bse118I	RCCGGY	2 cut(s)	176, 464
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	10, 132, 165
BseLI	CCNNNNNNNGG	4 cut(s)	221, 222, 359, 426
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	2 cut(s)	339, 381
BsiSI	CCGG	4 cut(s)	177, 343, 427, 465
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	4 cut(s)	221, 222, 359, 426
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	7 cut(s)	50, 174, 196, 262, 453, 459, 462
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	341, 383
BspT107I	GGYRCC	2 cut(s)	339, 381
BsrBI	CCGCTC	1 cut(s)	52
BsrFI	RCCGGY	2 cut(s)	176, 464
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	2 cut(s)	176, 464
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	164, 471
BstACI	GRCGYC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	10, 132, 165
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	183, 490
BstHHI	GCGC	2 cut(s)	182, 489
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 309, 339, 461
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	10, 132, 165
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	2 cut(s)	182, 489
Cfr10I	RCCGGY	2 cut(s)	176, 464
CseI	GACGC	3 cut(s)	276, 292, 326
CviAII	CATG	2 cut(s)	38, 357
CviJI	RGCY	5 cut(s)	73, 95, 141, 333, 397
CviKI_1	RGCY	5 cut(s)	73, 95, 141, 333, 397
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eam1104I	CTCTTC	2 cut(s)	164, 471
EarI	CTCTTC	2 cut(s)	164, 471
EciI	GGCGGA	1 cut(s)	448
Eco47III	AGCGCT	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	393
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	41, 360
FaiI	YATR	5 cut(s)	39, 101, 113, 358, 375
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	2 cut(s)	37, 356
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	174, 196, 462
FokI	GGATG	2 cut(s)	119, 152
Fsp4HI	GCNGC	3 cut(s)	174, 196, 462
GlaI	GCGC	2 cut(s)	181, 488
GluI	GCNGC	3 cut(s)	174, 196, 462
HaeII	RGCGCY	2 cut(s)	183, 490
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	4 cut(s)	177, 343, 427, 465
HgaI	GACGC	3 cut(s)	276, 292, 326
HhaI	GCGC	2 cut(s)	182, 489
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	41, 360
Hin6I	GCGC	2 cut(s)	180, 487
HinP1I	GCGC	2 cut(s)	180, 487
HpaII	CCGG	4 cut(s)	177, 343, 427, 465
HphI	GGTGA	3 cut(s)	8, 356, 479
Hpy188I	TCNGA	2 cut(s)	269, 298
Hpy188III	TCNNGA	2 cut(s)	244, 326
Hpy99I	CGWCG	5 cut(s)	149, 195, 292, 295, 308
HpyAV	CCTTC	2 cut(s)	160, 323
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 309, 339, 461
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	41, 360
HspAI	GCGC	2 cut(s)	180, 487
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	57, 78
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	42
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	1 cut(s)	40
MboII	GAAGA	7 cut(s)	72, 115, 118, 151, 482, 485, 488
MluCI	AATT	4 cut(s)	203, 440, 496, 514
MluI	ACGCGT	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	321
MreI	CGCCGGCG	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	176
MseI	TTAA	3 cut(s)	90, 402, 501
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	4 cut(s)	177, 343, 427, 465
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	4 cut(s)	179, 309, 339, 461
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	40
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	41, 360
NlaIV	GGNNCC	2 cut(s)	341, 383
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	175, 197, 463
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	393
PspEI	GGTNACC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	341, 383
PsyI	GACNNNGTC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	90, 402, 501
SatI	GCNGC	3 cut(s)	174, 196, 462
Sau3AI	GATC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	9 cut(s)	75, 110, 119, 213, 369, 383, 395, 408, 436
SgrAI	CRCCGGYG	2 cut(s)	176, 464
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	4 cut(s)	203, 440, 496, 514
SsiI	CCGC	7 cut(s)	50, 174, 196, 262, 453, 459, 462
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	207, 387
TasI	AATT	4 cut(s)	203, 440, 496, 514
TauI	GCSGC	3 cut(s)	176, 198, 464
Tru1I	TTAA	3 cut(s)	90, 402, 501
Tru9I	TTAA	3 cut(s)	90, 402, 501
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspRI	CASTG	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.