Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Reverse (-)

7586828 .. 7588514

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCTCCCTCCTCTGATCCCTACCGCCGCAACCACAATCATGTAATTCCACAGCCCCGGCCGCCGCCTCCAAAATCCAATCCAAAGCTTCTCTCTCTCATCATCAAAGCCCTGGTTATGACCTCCATAACCTCCCTCTTCTTCCTCTTCGTCGGCCTCGCCGCCATCGTCCTCTTCCTCTTCCTCGCCGCCGGCGCTCTCCACGGCCGCCGAGCCCAGTCACCCCTCCCCTCATCTGGGTTTTCCTCCAGACATCTCAAGGCCCTTACCCAGTTCCGCTTCAGAGCCCAGCCCCAATCCCAAACGACGTCGCCCTCGCCGACGCCGACGGACTGCGTCGTTTGCCTGGACTCGTTTCGCGATGGGCAGTGGTGCAGGAAACTCGCTGCTTGCAACCACGTGTTCCATAGGCGGTGCGTGGACACGTGGCTGTTGAAGGTGTCCGCGTGTCCGATTTGCCGTAGACGTGTGCGGTTAGATTCTGGGGACGCGGACGCGGTGGTTGGTTTGGATGGAGAAGAAGAGGCCAAGTACATGTGGAATTTTAATAGTAACAGTAATGATTTGAGGGTGAGGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

9.99

Isoelectric Point (pI)

63.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	463
AccII	CGCG	4 cut(s)	360, 446, 491, 497
AclWI	GGATC	1 cut(s)	11
AcoI	YGGCCR	2 cut(s)	59, 205
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	265
AcvI	CACGTG	2 cut(s)	400, 426
AcyI	GRCGYC	2 cut(s)	308, 323
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	2 cut(s)	236, 237
AflIII	ACRYGT	4 cut(s)	399, 423, 466, 534
AgsI	TTSAA	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	467
AjnI	CCWGG	2 cut(s)	111, 345
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	5 cut(s)	59, 154, 205, 261, 525
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	213, 583
BanII	GRGCYC	2 cut(s)	217, 289
BbrPI	CACGTG	2 cut(s)	400, 426
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	173, 356, 506
BceAI	ACGGC	2 cut(s)	220, 444
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	2 cut(s)	113, 347
BcnI	CCSGG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	7 cut(s)	28, 62, 65, 162, 189, 208, 387
BlsI	GCNGC	7 cut(s)	29, 63, 66, 163, 190, 209, 388
Bme1390I	CCNGG	3 cut(s)	58, 113, 347
BmgBI	CACGTC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	3 cut(s)	58, 113, 347
BmrI	ACTGGG	2 cut(s)	211, 265
BmuI	ACTGGG	2 cut(s)	211, 265
BpmI	CTGGAG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	2 cut(s)	400, 426
BsaHI	GRCGYC	2 cut(s)	308, 323
BsaJI	CCNNGG	3 cut(s)	56, 111, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 237
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	217, 271
BseBI	CCWGG	2 cut(s)	113, 347
BseDI	CCNNGG	3 cut(s)	56, 111, 202
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	2 cut(s)	236, 237
BseNI	ACTGG	2 cut(s)	217, 271
BseX3I	CGGCCG	2 cut(s)	59, 205
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	394
Bsh1236I	CGCG	4 cut(s)	360, 446, 491, 497
Bsh1285I	CGRYCG	2 cut(s)	62, 208
BshFI	GGCC	5 cut(s)	61, 156, 207, 263, 527
BsiEI	CGRYCG	2 cut(s)	62, 208
BsiSI	CCGG	2 cut(s)	58, 192
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	236, 237
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	5 cut(s)	61, 156, 207, 263, 527
Bsp1286I	GDGCHC	2 cut(s)	217, 289
Bsp143I	GATC	1 cut(s)	16
Bsp68I	TCGCGA	1 cut(s)	360
BspANI	GGCC	5 cut(s)	61, 156, 207, 263, 527
BspFNI	CGCG	4 cut(s)	360, 446, 491, 497
BspPI	GGATC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	217, 271
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	56, 111, 202
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	2 cut(s)	308, 323
Bst2UI	CCWGG	2 cut(s)	113, 347
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	5 cut(s)	143, 152, 179, 185, 516
BstACI	GRCGYC	2 cut(s)	308, 323
BstBAI	YACGTR	2 cut(s)	400, 426
BstC8I	GCNNGC	2 cut(s)	193, 391
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	4 cut(s)	360, 446, 491, 497
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMCI	CGRYCG	2 cut(s)	62, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 194, 342
BstNI	CCWGG	2 cut(s)	113, 347
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	3 cut(s)	56, 111, 345
BstUI	CGCG	4 cut(s)	360, 446, 491, 497
BstV1I	GCAGC	1 cut(s)	373
BstZI	CGGCCG	2 cut(s)	59, 205
BsuRI	GGCC	5 cut(s)	61, 156, 207, 263, 527
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	374
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	193, 391
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	4 cut(s)	325, 331, 497, 503
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	2 cut(s)	41, 535
CviQI	GTAC	1 cut(s)	532
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	59, 205
EagI	CGGCCG	2 cut(s)	59, 205
Eam1104I	CTCTTC	5 cut(s)	143, 152, 179, 185, 516
EarI	CTCTTC	5 cut(s)	143, 152, 179, 185, 516
EclXI	CGGCCG	2 cut(s)	59, 205
Eco24I	GRGCYC	2 cut(s)	217, 289
Eco52I	CGGCCG	2 cut(s)	59, 205
Eco57I	CTGAAG	1 cut(s)	265
Eco72I	CACGTG	2 cut(s)	400, 426
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	111, 345
EcoT38I	GRGCYC	2 cut(s)	217, 289
FaeI	CATG	2 cut(s)	44, 538
FaiI	YATR	5 cut(s)	42, 119, 128, 408, 536
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	2 cut(s)	40, 534
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	7 cut(s)	28, 62, 65, 162, 189, 208, 387
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	2 cut(s)	217, 289
Fsp4HI	GCNGC	7 cut(s)	28, 62, 65, 162, 189, 208, 387
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	7 cut(s)	28, 62, 65, 162, 189, 208, 387
GsaI	CCCAGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	61, 156, 207, 263, 527
HapII	CCGG	2 cut(s)	58, 192
HgaI	GACGC	4 cut(s)	325, 331, 497, 503
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	308, 323
Hin1II	CATG	2 cut(s)	44, 538
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	350, 479
HpaII	CCGG	2 cut(s)	58, 192
HphI	GGTGA	2 cut(s)	213, 583
Hpy166II	GTNNAC	2 cut(s)	421, 464
Hpy188I	TCNGA	3 cut(s)	16, 284, 453
Hpy188III	TCNNGA	2 cut(s)	249, 359
Hpy8I	GTNNAC	2 cut(s)	421, 464
Hpy99I	CGWCG	6 cut(s)	155, 310, 313, 325, 331, 341
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	4 cut(s)	308, 399, 425, 466
HpyCH4V	TGCA	2 cut(s)	375, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 194, 342
HpySE526I	ACGT	4 cut(s)	308, 399, 425, 466
Hsp92I	GRCGYC	2 cut(s)	308, 323
Hsp92II	CATG	2 cut(s)	44, 538
HspAI	GCGC	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	16
Lsp1109I	GCAGC	1 cut(s)	373
MaeII	ACGT	4 cut(s)	308, 399, 425, 466
MaeIII	GTNAC	2 cut(s)	219, 551
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	7 cut(s)	130, 133, 139, 166, 172, 530, 533
MhlI	GDGCHC	2 cut(s)	217, 289
MluCI	AATT	2 cut(s)	45, 541
MlyI	GAGTC	1 cut(s)	344
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	191
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	2 cut(s)	58, 192
MspR9I	CCNGG	3 cut(s)	58, 113, 347
MvaI	CCWGG	2 cut(s)	113, 347
MvnI	CGCG	4 cut(s)	360, 446, 491, 497
MwoI	GCNNNNNNNGC	3 cut(s)	61, 194, 342
NaeI	GCCGGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	16
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	44, 538
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	219
NruI	TCGCGA	1 cut(s)	360
NspI	RCATGY	1 cut(s)	538
PciI	ACATGT	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 317, 323
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	7 cut(s)	29, 63, 66, 163, 190, 209, 388
PleI	GAGTC	1 cut(s)	344
PmaCI	CACGTG	2 cut(s)	400, 426
PmlI	CACGTG	2 cut(s)	400, 426
PpsI	GAGTC	1 cut(s)	344
Ppu21I	YACGTR	2 cut(s)	400, 426
PscI	ACATGT	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	111, 345
PspCI	CACGTG	2 cut(s)	400, 426
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	111, 345
PspPI	GGNCC	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	335
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	7 cut(s)	28, 62, 65, 162, 189, 208, 387
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	58, 113, 347
SduI	GDGCHC	2 cut(s)	217, 289
SetI	ASST	8 cut(s)	90, 125, 134, 311, 402, 428, 441, 469
SgrAI	CRCCGGYG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	45, 541
StyD4I	CCNGG	3 cut(s)	56, 111, 345
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	4 cut(s)	311, 402, 428, 469
TasI	AATT	2 cut(s)	45, 541
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	6 cut(s)	30, 64, 67, 164, 191, 210
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	374
Tth111I	GACNNNGTC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	463
ZraI	GACGTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.