Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Forward (+)

42466585 .. 42467109

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCTCCTCATCCTCACCACCACCACCACCACGATCAACCACCGTCCCCAAAACCCAATCCGAAGCTCCTATCTTCAATCCTCAAAGCCCTCATAATGACCTTCATAACCTCAATCTTCTTCCTCCTCCTCGGCTTCGTCGCCTTCCTCCTCTTCCTCATCCTCGCCGCCGGCGCTCTCCACCGTCGCCGCACCCAATCCGACCTCCCATCATCTGGGTTCTCCCCCAGACACTTCAAGACCCTCCCTCAGTTCCGCTTCCGAACCCAAAACCAAACGGCGTCGTCGTCCGACTGCGTCGTCTGCCTGGACGCGTTTCGGGAAGGCCAGTGGTGCCGGAAACTCCCTGCATGTGGTCACCTGTTCCATAGGCGGTGCCTCGACACGTGGCTCGTTAAGGTTTCGGTTTGTCCCATTTGCCGGACGCCTGTTCAATTAGGGAACACCGCCTCCGCCGCCGGTGAAGAAGAAGAGGCAAAGCGCTTGTGGACTTTTAATAGGAACACTAATTCAAGGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

175

Amino Acids

19.85

Weight (kDa)

10.0

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	98 - 141	5e-13	Ring finger domain
zf-RING_11	PF17123	98 - 127	3.6e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	99 - 140	3.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	99 - 141	7.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	333, 375
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccII	CGCG	1 cut(s)	314
AciI	CCGC	7 cut(s)	168, 190, 256, 373, 447, 453, 456
AcvI	CACGTG	1 cut(s)	387
AcyI	GRCGYC	2 cut(s)	281, 425
AfeI	AGCGCT	1 cut(s)	482
AfiI	CCNNNNNNNGG	3 cut(s)	215, 353, 420
AflIII	ACRYGT	2 cut(s)	312, 384
AgsI	TTSAA	4 cut(s)	78, 238, 434, 513
AjnI	CCWGG	1 cut(s)	306
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	176, 483
AsuHPI	GGTGA	3 cut(s)	8, 350, 473
BanI	GGYRCC	2 cut(s)	333, 375
BbrPI	CACGTG	1 cut(s)	387
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	308
BfoI	RGCGCY	2 cut(s)	177, 484
BisI	GCNGC	3 cut(s)	168, 190, 456
BlsI	GCNGC	3 cut(s)	169, 191, 457
Bme1390I	CCNGG	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	335, 377
BmrFI	CCNGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	387
BsaHI	GRCGYC	2 cut(s)	281, 425
BsaJI	CCNNGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 353, 420
Bse118I	RCCGGY	2 cut(s)	170, 458
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	10, 159
BseLI	CCNNNNNNNGG	3 cut(s)	215, 353, 420
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	116, 119, 140
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	2 cut(s)	333, 375
BsiSI	CCGG	4 cut(s)	171, 337, 421, 459
BslFI	GGGAC	2 cut(s)	31, 396
BslI	CCNNNNNNNGG	3 cut(s)	215, 353, 420
BsmFI	GGGAC	2 cut(s)	31, 396
BsnI	GGCC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	7 cut(s)	168, 190, 256, 373, 447, 453, 456
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	2 cut(s)	335, 377
BspT107I	GGYRCC	2 cut(s)	333, 375
BsrFI	RCCGGY	2 cut(s)	170, 458
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	2 cut(s)	170, 458
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	2 cut(s)	281, 425
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	45, 185
Bst6I	CTCTTC	2 cut(s)	158, 465
BstACI	GRCGYC	2 cut(s)	281, 425
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	249
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	10, 159
BstFNI	CGCG	1 cut(s)	314
BstH2I	RGCGCY	2 cut(s)	177, 484
BstHHI	GCGC	2 cut(s)	176, 483
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 303, 333, 455
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	10, 159
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	2 cut(s)	176, 483
Cfr10I	RCCGGY	2 cut(s)	170, 458
CseI	GACGC	4 cut(s)	270, 286, 320, 433
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	5 cut(s)	67, 89, 135, 327, 391
CviKI_1	RGCY	5 cut(s)	67, 89, 135, 327, 391
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	2 cut(s)	158, 465
EarI	CTCTTC	2 cut(s)	158, 465
EciI	GGCGGA	1 cut(s)	442
Eco47III	AGCGCT	1 cut(s)	482
Eco72I	CACGTG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	354
FaiI	YATR	4 cut(s)	95, 107, 352, 369
FaqI	GGGAC	2 cut(s)	31, 396
FatI	CATG	1 cut(s)	350
Fnu4HI	GCNGC	3 cut(s)	168, 190, 456
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	168, 190, 456
GlaI	GCGC	2 cut(s)	175, 482
GluI	GCNGC	3 cut(s)	168, 190, 456
HaeII	RGCGCY	2 cut(s)	177, 484
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	4 cut(s)	171, 337, 421, 459
HgaI	GACGC	4 cut(s)	270, 286, 320, 433
HhaI	GCGC	2 cut(s)	176, 483
Hin1I	GRCGYC	2 cut(s)	281, 425
Hin1II	CATG	1 cut(s)	354
Hin6I	GCGC	2 cut(s)	174, 481
HinP1I	GCGC	2 cut(s)	174, 481
HpaII	CCGG	4 cut(s)	171, 337, 421, 459
HphI	GGTGA	3 cut(s)	8, 350, 473
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	4 cut(s)	63, 202, 263, 292
Hpy188III	TCNNGA	2 cut(s)	238, 320
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	5 cut(s)	143, 189, 286, 289, 302
HpyAV	CCTTC	3 cut(s)	112, 154, 317
HpyCH4III	ACNGT	2 cut(s)	45, 185
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 303, 333, 455
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	2 cut(s)	281, 425
Hsp92II	CATG	1 cut(s)	354
HspAI	GCGC	2 cut(s)	174, 481
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	7 cut(s)	66, 109, 112, 145, 476, 479, 482
MluCI	AATT	2 cut(s)	434, 508
MluI	ACGCGT	1 cut(s)	312
MmeI	TCCRAC	2 cut(s)	225, 315
MreI	CGCCGGCG	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	2 cut(s)	396, 495
MspI	CCGG	4 cut(s)	171, 337, 421, 459
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	4 cut(s)	173, 303, 333, 455
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	2 cut(s)	335, 377
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdiI	GCCGGC	1 cut(s)	172
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	169, 191, 457
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	335, 377
PsyI	GACNNNGTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	396, 495
SatI	GCNGC	3 cut(s)	168, 190, 456
Sau3AI	GATC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	7 cut(s)	69, 104, 113, 207, 363, 389, 402
SgrAI	CRCCGGYG	2 cut(s)	170, 458
Sse9I	AATT	2 cut(s)	434, 508
SsiI	CCGC	7 cut(s)	168, 190, 256, 373, 447, 453, 456
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	45, 185
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	434, 508
TauI	GCSGC	3 cut(s)	170, 192, 458
Tru1I	TTAA	2 cut(s)	396, 495
Tru9I	TTAA	2 cut(s)	396, 495
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	335
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	215
XceI	RCATGY	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.