AT2G19330

Plant intracellular Ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014334
Physical Location & Seq
Forward (+)
8372861 .. 8374453
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19330.1

Sequence Viewer

Length: 1143 bp
ATGATATGCGAGGAGGCATATCATCAGCAACCGCAAATACAAAAGGAACAAATGATGACGATGGATCAACGTAATAATCATCAACGGAAGAGATCACCATTATCCTCACCATCATCTCCATCATCACCATCGTCTCCATCATCACCAAAGTCACCATCATTCAATAATAATGAGGAAGAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAATCCTTCACTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAATAATCATCTTCAGACCATACCAGAATCACTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAATCAGATCAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTCTCAATGTCTCCGGCAACTTTCTTGTATCCTTTCCCAAATCTATCCAACATTGCAGGTCATTGGAAGAACTAAATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCATTGGTTTTGAACTCACCAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCAATCTCCATTACTCACCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCCTCATGATTCTACCGGATGATCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCCAGAATTTCCAGTATCTTTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTACAACAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGACGGTTAAGGAAGCTGAGTGTTGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGTGATGGAGCAGAATTTGCAGGTGGTGAGAGAGTATCTGACACAGAAGATGAATGGTGGCTCACCAAGGAGTCCCAGCAAAAAGAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAGCTGGAATAGAGAGGAGAGAGAAGGGTTCATCATGCCTGAGTACCGCTCCATCGACAGTCTTGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGTCGTCTCTTTTCTCCAAGAACCTATTTCAGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

380

Amino Acids

42.81

Weight (kDa)

9.34

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 81 - 160 3.1e-08 Leucine-rich repeat region
LRR_8 PF13855 87 - 140 6.6e-09 Leucine rich repeat
LRR_8 PF13855 109 - 165 2.2e-06 Leucine rich repeat
LRR_8 PF13855 224 - 283 1.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
Acc36I ACCTGC 2 cut(s) 447, 877
AccBSI CCGCTC 2 cut(s) 716, 1056
AciI CCGC 5 cut(s) 32, 714, 845, 999, 1054
AclWI GGATC 3 cut(s) 72, 673, 1009
AcsI RAATTY 3 cut(s) 196, 697, 880
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 618
AfaI GTAC 1 cut(s) 1052
AfiI CCNNNNNNNGG 1 cut(s) 537
AgsI TTSAA 5 cut(s) 163, 487, 524, 836, 994
AjiI CACGTC 1 cut(s) 1106
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 8 cut(s) 138, 225, 307, 389, 415, 629, 805, 1115
AlwI GGATC 3 cut(s) 72, 673, 1009
Ama87I CYCGRG 2 cut(s) 656, 674
AoxI GGCC 1 cut(s) 733
ApeKI GCWGC 1 cut(s) 804
ApoI RAATTY 3 cut(s) 196, 697, 880
AspA2I CCTAGG 1 cut(s) 1079
AvaI CYCGRG 2 cut(s) 656, 674
AvrII CCTAGG 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 1 cut(s) 791
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BciVI GTATCC 1 cut(s) 439
BcoDI GTCTC 8 cut(s) 138, 225, 307, 389, 415, 629, 805, 1115
BfaI CTAG 2 cut(s) 185, 1080
BfuAI ACCTGC 2 cut(s) 447, 877
BfuI GTATCC 1 cut(s) 439
BisI GCNGC 1 cut(s) 805
BlnI CCTAGG 1 cut(s) 1079
BlsI GCNGC 1 cut(s) 806
BmeT110I CYCGRG 2 cut(s) 656, 674
BmgBI CACGTC 1 cut(s) 1106
BoxI GACNNNNGTC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 1040, 1072
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 932, 1079
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 932, 1079
BseGI GGATG 2 cut(s) 213, 655
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 263, 818, 1038
BseNI ACTGG 1 cut(s) 703
BseRI GAGGAG 2 cut(s) 26, 1037
BseXI GCAGC 1 cut(s) 791
BseYI CCCAGC 1 cut(s) 941
BshFI GGCC 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 2 cut(s) 656, 674
BsiSI CCGG 2 cut(s) 414, 647
BslFI GGGAC 2 cut(s) 924, 1000
BslI CCNNNNNNNGG 1 cut(s) 537
BsmAI GTCTC 8 cut(s) 138, 225, 307, 389, 415, 629, 805, 1115
BsmBI CGTCTC 4 cut(s) 138, 629, 805, 1115
BsmFI GGGAC 2 cut(s) 924, 1000
BsnI GGCC 1 cut(s) 735
BsoBI CYCGRG 2 cut(s) 656, 674
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
BspACI CCGC 5 cut(s) 32, 714, 845, 999, 1054
BspANI GGCC 1 cut(s) 735
BspCNI CTCAG 3 cut(s) 262, 819, 1039
BspHI TCATGA 1 cut(s) 636
BspMI ACCTGC 2 cut(s) 447, 877
BspPI GGATC 3 cut(s) 72, 673, 1009
BspQI GCTCTTC 2 cut(s) 369, 723
BsrBI CCGCTC 2 cut(s) 716, 1056
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 703
BssECI CCNNGG 2 cut(s) 932, 1079
BssMI GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
BssNI GRCGYC 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 932, 1079
Bst4CI ACNGT 3 cut(s) 784, 816, 1067
Bst6I CTCTTC 4 cut(s) 83, 171, 369, 723
BstACI GRCGYC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 883
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 5 cut(s) 249, 390, 536, 827, 1047
BstF5I GGATG 2 cut(s) 213, 655
BstKTI GATC 8 cut(s) 67, 95, 268, 357, 655, 681, 780, 1004
BstMAI GTCTC 8 cut(s) 138, 225, 307, 389, 415, 629, 805, 1115
BstMBI GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
BstMWI GCNNNNNNNGC 2 cut(s) 853, 883
BstPAI GACNNNNGTC 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 791
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 1 cut(s) 678
BstYI RGATCY 1 cut(s) 678
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 1 cut(s) 735
BtrI CACGTC 1 cut(s) 1106
BtsCI GGATG 2 cut(s) 213, 655
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 2 cut(s) 447, 877
Cac8I GCNNGC 1 cut(s) 260
CciI TCATGA 1 cut(s) 636
CseI GACGC 1 cut(s) 626
Csp6I GTAC 1 cut(s) 1051
CviAII CATG 4 cut(s) 637, 808, 957, 1042
CviQI GTAC 1 cut(s) 1051
DdeI CTNAG 5 cut(s) 249, 390, 536, 827, 1047
DpnI GATC 8 cut(s) 66, 94, 267, 356, 654, 680, 779, 1003
DpnII GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
Eam1104I CTCTTC 4 cut(s) 83, 171, 369, 723
EarI CTCTTC 4 cut(s) 83, 171, 369, 723
EciI GGCGGA 1 cut(s) 1014
Ecl136II GAGCTC 1 cut(s) 757
Eco130I CCWWGG 2 cut(s) 932, 1079
Eco24I GRGCYC 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 2 cut(s) 656, 674
EcoICRI GAGCTC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 932, 1079
EcoT38I GRGCYC 1 cut(s) 759
ErhI CCWWGG 2 cut(s) 932, 1079
Esp3I CGTCTC 4 cut(s) 138, 629, 805, 1115
FaeI CATG 4 cut(s) 640, 811, 960, 1045
FaiI YATR 9 cut(s) 7, 19, 293, 638, 809, 863, 958, 984, 1043
FaqI GGGAC 2 cut(s) 924, 1000
FatI CATG 4 cut(s) 636, 807, 956, 1041
FauI CCCGC 1 cut(s) 852
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 2 cut(s) 220, 662
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 2 cut(s) 185, 1080
GluI GCNGC 1 cut(s) 805
GsaI CCCAGC 1 cut(s) 945
HaeIII GGCC 1 cut(s) 735
HapII CCGG 2 cut(s) 414, 647
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 4 cut(s) 640, 811, 960, 1045
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 9 cut(s) 218, 299, 400, 509, 640, 661, 794, 937, 963
HpaII CCGG 2 cut(s) 414, 647
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 5 cut(s) 252, 288, 354, 500, 906
Hpy188III TCNNGA 7 cut(s) 397, 637, 656, 658, 676, 1005, 1089
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 1110
HpyAV CCTTC 3 cut(s) 243, 830, 1025
HpyCH4III ACNGT 3 cut(s) 784, 816, 1067
HpyCH4IV ACGT 3 cut(s) 70, 989, 1105
HpyCH4V TGCA 5 cut(s) 258, 456, 479, 807, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 853, 883
HpyF3I CTNAG 5 cut(s) 249, 390, 536, 827, 1047
HpySE526I ACGT 3 cut(s) 70, 989, 1105
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 4 cut(s) 640, 811, 960, 1045
Kzo9I GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
LguI GCTCTTC 2 cut(s) 369, 723
LmnI GCTCC 2 cut(s) 874, 1061
Lsp1109I GCAGC 1 cut(s) 791
MaeI CTAG 2 cut(s) 185, 1080
MaeII ACGT 3 cut(s) 70, 989, 1105
MaeIII GTNAC 1 cut(s) 150
MalI GATC 8 cut(s) 66, 94, 267, 356, 654, 680, 779, 1003
MbiI CCGCTC 2 cut(s) 716, 1056
MboI GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
MboII GAAGA 9 cut(s) 100, 188, 275, 356, 479, 566, 710, 717, 925
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 1 cut(s) 759
MluCI AATT 6 cut(s) 196, 241, 567, 697, 880, 971
MlyI GAGTC 5 cut(s) 227, 394, 503, 803, 946
MmeI TCCRAC 2 cut(s) 472, 582
MseI TTAA 2 cut(s) 740, 818
MslI CAYNNNNRTG 1 cut(s) 866
MspI CCGG 2 cut(s) 414, 647
MwoI GCNNNNNNNGC 2 cut(s) 853, 883
NdeII GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
NlaIII CATG 4 cut(s) 640, 811, 960, 1045
NmuCI GTSAC 1 cut(s) 150
PaeR7I CTCGAG 2 cut(s) 656, 674
PagI TCATGA 1 cut(s) 636
PaqCI CACCTGC 1 cut(s) 877
PciSI GCTCTTC 2 cut(s) 369, 723
PfeI GAWTC 4 cut(s) 299, 640, 661, 963
PkrI GCNGC 1 cut(s) 806
PleI GAGTC 5 cut(s) 226, 394, 503, 802, 945
PpsI GAGTC 5 cut(s) 226, 394, 503, 802, 945
PshAI GACNNNNGTC 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 759
PspFI CCCAGC 1 cut(s) 941
PsrI GAACNNNNNNTAC 2 cut(s) 974, 1006
PsuI RGATCY 1 cut(s) 678
RsaI GTAC 1 cut(s) 1052
RsaNI GTAC 1 cut(s) 1051
RseI CAYNNNNRTG 1 cut(s) 866
SacI GAGCTC 1 cut(s) 759
SapI GCTCTTC 2 cut(s) 369, 723
SaqAI TTAA 2 cut(s) 740, 818
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 8 cut(s) 64, 92, 265, 354, 652, 678, 777, 1001
SchI GAGTC 5 cut(s) 227, 394, 503, 803, 946
SduI GDGCHC 1 cut(s) 759
Sfr274I CTCGAG 2 cut(s) 656, 674
SlaI CTCGAG 2 cut(s) 656, 674
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 3 cut(s) 395, 656, 674
SmoI CTYRAG 3 cut(s) 395, 656, 674
Sse9I AATT 6 cut(s) 196, 241, 567, 697, 880, 971
SsiI CCGC 5 cut(s) 32, 714, 845, 999, 1054
SspMI CTAG 2 cut(s) 185, 1080
SstI GAGCTC 1 cut(s) 759
StyI CCWWGG 2 cut(s) 932, 1079
TaaI ACNGT 3 cut(s) 784, 816, 1067
TaiI ACGT 3 cut(s) 73, 992, 1108
TaqI TCGA 4 cut(s) 657, 675, 759, 1062
TasI AATT 6 cut(s) 196, 241, 567, 697, 880, 971
TfiI GAWTC 4 cut(s) 299, 640, 661, 963
Tru1I TTAA 2 cut(s) 740, 818
Tru9I TTAA 2 cut(s) 740, 818
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 1 cut(s) 804
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 758, 932, 1027
TspGWI ACGGA 2 cut(s) 100, 596
TspRI CASTG 1 cut(s) 787
XapI RAATTY 3 cut(s) 196, 697, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 868
XhoI CTCGAG 2 cut(s) 656, 674
XmaJI CCTAGG 1 cut(s) 1079
XspI CTAG 2 cut(s) 185, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.