AT4G29880

Plant intracellular Ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014334
Physical Location & Seq
Reverse (-)
14606926 .. 14608478
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29880.1

Sequence Viewer

Length: 1122 bp
ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATGACAATGATGATGATGGACTTGAGTACATCACCACCATCATCACCACTTTCACCATCCTTATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACTAGAGGTTGTGAATTTGAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAAGCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCAAGATTACTCAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTCTTCCAAACTCCATTGGTTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCAAACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAGATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAAAAGCTCTGTGTCAACTCAAACAAGCTCATTAGCCTACCAGCCACCATCACCTGCCTCACTTCCCTGCGTGTCCTCGATGCTCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGAGAACCTCATCAACCTCGAAATCCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCTATTGGATGCATGAGGCGCCTACGAAAACTGAGCGCGGAAGGAAACCCACTCGTCTCCCCACCCATTGAGGTTGTGGAACAGAGCTTGCATGCGGTGCGAGAGTATCTGAGCCAAAAGATGAATGGTAAACTGGTGAACACCGCAGCAAAGAAGAAGACATGGGGTTTCCGTAAACTAGTCAAGTACGGGACATTCAATGGCAGATCAAGGGTTTGGACCAGGGAAGAGCGAGAAGGGCTCATCATGCCTGAGTACCGTCCCATTGATATCCTAACTTCCACCAAGTTTCCTGTGACGTGCTCACCTCGACGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

373

Amino Acids

41.99

Weight (kDa)

8.98

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 79 - 153 8.4e-10 Leucine-rich repeat region
LRR_8 PF13855 80 - 133 3.5e-09 Leucine rich repeat
LRR_8 PF13855 102 - 158 8.5e-06 Leucine rich repeat
LRR_8 PF13855 217 - 276 1.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 578
AatII GACGTC 1 cut(s) 1090
Acc36I ACCTGC 2 cut(s) 426, 578
AccB1I GGYRCC 1 cut(s) 792
AccII CGCG 1 cut(s) 812
AciI CCGC 3 cut(s) 812, 869, 918
AclWI GGATC 3 cut(s) 57, 373, 613
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 2 cut(s) 793, 1087
AfaI GTAC 3 cut(s) 85, 962, 1031
AfiI CCNNNNNNNGG 3 cut(s) 223, 628, 736
AgsI TTSAA 3 cut(s) 428, 466, 973
AhlI ACTAGT 1 cut(s) 952
AjiI CACGTC 1 cut(s) 1074
AjnI CCWGG 1 cut(s) 995
AluBI AGCT 8 cut(s) 241, 341, 373, 472, 523, 544, 747, 861
AluI AGCT 8 cut(s) 241, 341, 373, 472, 523, 544, 747, 861
Alw21I GWGCWC 1 cut(s) 1079
Alw26I GTCTC 5 cut(s) 154, 394, 608, 835, 1094
AlwI GGATC 3 cut(s) 57, 373, 613
Ama87I CYCGRG 1 cut(s) 635
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 2 cut(s) 795, 812
AspS9I GGNCC 2 cut(s) 631, 993
AsuHPI GGTGA 7 cut(s) 81, 93, 102, 123, 559, 922, 1071
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 2 cut(s) 631, 993
AxyI CCTNAGG 1 cut(s) 627
BanI GGYRCC 1 cut(s) 792
BanII GRGCYC 1 cut(s) 1017
BbsI GAAGAC 2 cut(s) 707, 938
Bbv12I GWGCWC 1 cut(s) 1079
BbvI GCAGC 1 cut(s) 932
BccI CCATC 6 cut(s) 67, 103, 121, 142, 572, 709
BcgI CGANNNNNNTGC 4 cut(s) 385, 419, 424, 458
BciT130I CCWGG 1 cut(s) 997
BcoDI GTCTC 5 cut(s) 154, 394, 608, 835, 1094
BcuI ACTAGT 1 cut(s) 952
BfaI CTAG 2 cut(s) 164, 953
BfoI RGCGCY 1 cut(s) 796
BfuAI ACCTGC 2 cut(s) 426, 578
BisI GCNGC 1 cut(s) 921
BlsI GCNGC 1 cut(s) 922
Bme1390I CCNGG 1 cut(s) 997
Bme18I GGWCC 2 cut(s) 631, 993
BmeT110I CYCGRG 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 1074
BmgT120I GGNCC 2 cut(s) 631, 993
BmiI GGNNCC 1 cut(s) 794
BmrFI CCNGG 1 cut(s) 997
BmsI GCATC 3 cut(s) 4, 586, 773
BpiI GAAGAC 2 cut(s) 707, 938
BplI GAGNNNNNCTC 2 cut(s) 999, 1031
BpuEI CTTGAG 2 cut(s) 100, 359
BsaBI GATNNNNATC 1 cut(s) 18
BsaHI GRCGYC 2 cut(s) 793, 1087
BsaJI CCNNGG 1 cut(s) 996
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 628, 736
Bse1I ACTGG 3 cut(s) 682, 741, 912
Bse21I CCTNAGG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 997
BseDI CCNNGG 1 cut(s) 996
BseGI GGATG 2 cut(s) 113, 788
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 223, 628, 736
BseMII CTCAG 5 cut(s) 618, 762, 797, 875, 1017
BseNI ACTGG 3 cut(s) 682, 741, 912
BseRI GAGGAG 1 cut(s) 719
BseXI GCAGC 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 812
BshNI GGYRCC 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 1079
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 979, 1020
BslI CCNNNNNNNGG 3 cut(s) 223, 628, 736
BsmAI GTCTC 5 cut(s) 154, 394, 608, 835, 1094
BsmBI CGTCTC 3 cut(s) 608, 835, 1094
BsmFI GGGAC 2 cut(s) 979, 1020
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 1017, 1079
Bsp143I GATC 6 cut(s) 49, 244, 333, 378, 618, 980
BspACI CCGC 3 cut(s) 812, 869, 918
BspCNI CTCAG 5 cut(s) 619, 763, 798, 876, 1018
BspFNI CGCG 1 cut(s) 812
BspLI GGNNCC 1 cut(s) 794
BspMI ACCTGC 2 cut(s) 426, 578
BspPI GGATC 3 cut(s) 57, 373, 613
BspQI GCTCTTC 3 cut(s) 348, 702, 996
BspT107I GGYRCC 1 cut(s) 792
BsrI ACTGG 3 cut(s) 682, 741, 912
BssECI CCNNGG 1 cut(s) 996
BssMI GATC 6 cut(s) 49, 244, 333, 378, 618, 980
BssNI GRCGYC 2 cut(s) 793, 1087
Bst2UI CCWGG 1 cut(s) 997
Bst4CI ACNGT 2 cut(s) 763, 1034
Bst6I CTCTTC 5 cut(s) 150, 348, 702, 996, 1097
BstACI GRCGYC 2 cut(s) 793, 1087
BstAPI GCANNNNNTGC 1 cut(s) 871
BstC8I GCNNGC 3 cut(s) 239, 863, 867
BstDEI CTNAG 7 cut(s) 369, 499, 627, 771, 806, 884, 1026
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 2 cut(s) 113, 788
BstFNI CGCG 1 cut(s) 812
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 2 cut(s) 795, 812
BstKTI GATC 6 cut(s) 52, 247, 336, 381, 621, 983
BstMAI GTCTC 5 cut(s) 154, 394, 608, 835, 1094
BstMBI GATC 6 cut(s) 49, 244, 333, 378, 618, 980
BstMWI GCNNNNNNNGC 4 cut(s) 792, 871, 1012, 1021
BstNI CCWGG 1 cut(s) 997
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 995
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 1 cut(s) 932
BstV2I GAAGAC 2 cut(s) 707, 938
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 627
BtrI CACGTC 1 cut(s) 1074
BtsCI GGATG 2 cut(s) 113, 788
BtsIMutI CAGTG 1 cut(s) 768
BveI ACCTGC 2 cut(s) 426, 578
Cac8I GCNNGC 3 cut(s) 239, 863, 867
CfoI GCGC 2 cut(s) 795, 812
Cfr13I GGNCC 2 cut(s) 631, 993
Csp6I GTAC 3 cut(s) 84, 961, 1030
CviAII CATG 7 cut(s) 38, 55, 187, 787, 866, 936, 1021
CviQI GTAC 3 cut(s) 84, 961, 1030
DdeI CTNAG 7 cut(s) 369, 499, 627, 771, 806, 884, 1026
DinI GGCGCC 1 cut(s) 794
DpnI GATC 6 cut(s) 51, 246, 335, 380, 620, 982
DpnII GATC 6 cut(s) 49, 244, 333, 378, 618, 980
Eam1104I CTCTTC 5 cut(s) 150, 348, 702, 996, 1097
EarI CTCTTC 5 cut(s) 150, 348, 702, 996, 1097
Eco24I GRGCYC 1 cut(s) 1017
Eco32I GATATC 1 cut(s) 1045
Eco47I GGWCC 2 cut(s) 631, 993
Eco81I CCTNAGG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 635
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 995
EcoRV GATATC 1 cut(s) 1045
EcoT22I ATGCAT 2 cut(s) 19, 788
EcoT38I GRGCYC 1 cut(s) 1017
EgeI GGCGCC 1 cut(s) 794
EheI GGCGCC 1 cut(s) 794
Esp3I CGTCTC 3 cut(s) 608, 835, 1094
FaeI CATG 7 cut(s) 41, 58, 190, 790, 869, 939, 1024
FaqI GGGAC 2 cut(s) 979, 1020
FatI CATG 7 cut(s) 37, 54, 186, 786, 865, 935, 1020
Fnu4HI GCNGC 1 cut(s) 921
FokI GGATG 2 cut(s) 100, 795
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 1 cut(s) 921
FspBI CTAG 2 cut(s) 164, 953
GlaI GCGC 2 cut(s) 794, 811
GluI GCNGC 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 796
HapII CCGG 1 cut(s) 393
HhaI GCGC 2 cut(s) 795, 812
Hin1I GRCGYC 2 cut(s) 793, 1087
Hin1II CATG 7 cut(s) 41, 58, 190, 790, 869, 939, 1024
Hin6I GCGC 2 cut(s) 793, 810
HinP1I GCGC 2 cut(s) 793, 810
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 278, 773
HpaII CCGG 1 cut(s) 393
HphI GGTGA 7 cut(s) 81, 93, 102, 123, 559, 922, 1071
Hpy166II GTNNAC 4 cut(s) 532, 905, 913, 950
Hpy188I TCNGA 3 cut(s) 516, 675, 885
Hpy188III TCNNGA 4 cut(s) 265, 376, 637, 721
Hpy8I GTNNAC 4 cut(s) 532, 905, 913, 950
Hpy99I CGWCG 1 cut(s) 1089
HpyAV CCTTC 3 cut(s) 222, 809, 1004
HpyCH4III ACNGT 2 cut(s) 763, 1034
HpyCH4IV ACGT 2 cut(s) 1073, 1087
HpyCH4V TGCA 5 cut(s) 17, 237, 435, 786, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 792, 871, 1012, 1021
HpyF3I CTNAG 7 cut(s) 369, 499, 627, 771, 806, 884, 1026
HpySE526I ACGT 2 cut(s) 1073, 1087
Hsp92I GRCGYC 2 cut(s) 793, 1087
Hsp92II CATG 7 cut(s) 41, 58, 190, 790, 869, 939, 1024
HspAI GCGC 2 cut(s) 793, 810
KasI GGCGCC 1 cut(s) 792
Kzo9I GATC 6 cut(s) 49, 244, 333, 378, 618, 980
LguI GCTCTTC 3 cut(s) 348, 702, 996
Lsp1109I GCAGC 1 cut(s) 932
LweI GCATC 3 cut(s) 4, 586, 773
MaeI CTAG 2 cut(s) 164, 953
MaeII ACGT 2 cut(s) 1073, 1087
MaeIII GTNAC 3 cut(s) 129, 438, 1069
MalI GATC 6 cut(s) 51, 246, 335, 380, 620, 982
MboI GATC 6 cut(s) 49, 244, 333, 378, 618, 980
MfeI CAATTG 1 cut(s) 607
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 2 cut(s) 1017, 1079
MluCI AATT 5 cut(s) 32, 175, 220, 430, 607
Mly113I GGCGCC 1 cut(s) 793
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 276
Mph1103I ATGCAT 2 cut(s) 19, 788
MseI TTAA 1 cut(s) 384
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 997
MunI CAATTG 1 cut(s) 607
MvaI CCWGG 1 cut(s) 997
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 4 cut(s) 792, 871, 1012, 1021
NarI GGCGCC 1 cut(s) 793
NdeII GATC 6 cut(s) 49, 244, 333, 378, 618, 980
NlaIII CATG 7 cut(s) 41, 58, 190, 790, 869, 939, 1024
NlaIV GGNNCC 1 cut(s) 794
NmuCI GTSAC 3 cut(s) 129, 438, 1069
NsiI ATGCAT 2 cut(s) 19, 788
NspI RCATGY 1 cut(s) 869
PaeI GCATGC 1 cut(s) 869
PaeR7I CTCGAG 1 cut(s) 635
PaqCI CACCTGC 1 cut(s) 578
PciSI GCTCTTC 3 cut(s) 348, 702, 996
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 922
PleI GAGTC 1 cut(s) 781
PluTI GGCGCC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 781
PpuMI RGGWCCY 1 cut(s) 631
Psp5II RGGWCCY 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 995
PspGI CCWGG 1 cut(s) 995
PspN4I GGNNCC 1 cut(s) 794
PspPI GGNCC 2 cut(s) 631, 993
PspPPI RGGWCCY 1 cut(s) 631
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 3 cut(s) 85, 962, 1031
RsaNI GTAC 3 cut(s) 84, 961, 1030
SapI GCTCTTC 3 cut(s) 348, 702, 996
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 921
Sau3AI GATC 6 cut(s) 49, 244, 333, 378, 618, 980
Sau96I GGNCC 2 cut(s) 631, 993
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 1 cut(s) 997
SduI GDGCHC 2 cut(s) 1017, 1079
SfaNI GCATC 3 cut(s) 4, 586, 773
SfoI GGCGCC 1 cut(s) 794
Sfr274I CTCGAG 1 cut(s) 635
SinI GGWCC 2 cut(s) 631, 993
SlaI CTCGAG 1 cut(s) 635
SmlI CTYRAG 3 cut(s) 79, 374, 635
SmoI CTYRAG 3 cut(s) 79, 374, 635
SpeI ACTAGT 1 cut(s) 952
SphI GCATGC 1 cut(s) 869
Sse9I AATT 5 cut(s) 32, 175, 220, 430, 607
SsiI CCGC 3 cut(s) 812, 869, 918
SspDI GGCGCC 1 cut(s) 792
SspI AATATT 1 cut(s) 232
SspMI CTAG 2 cut(s) 164, 953
StyD4I CCNGG 1 cut(s) 995
TaaI ACNGT 2 cut(s) 763, 1034
TaiI ACGT 2 cut(s) 1076, 1090
TaqI TCGA 6 cut(s) 444, 594, 636, 654, 732, 1084
TaqII GACCGA 1 cut(s) 701
TasI AATT 5 cut(s) 32, 175, 220, 430, 607
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 3 cut(s) 129, 438, 1069
TseI GCWGC 1 cut(s) 920
Tsp45I GTSAC 3 cut(s) 129, 438, 1069
TspDTI ATGAA 1 cut(s) 911
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 1 cut(s) 768
VpaK11BI GGWCC 2 cut(s) 631, 993
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 869
XcmI CCANNNNNNNNNTGG 2 cut(s) 847, 896
XhoI CTCGAG 1 cut(s) 635
XspI CTAG 2 cut(s) 164, 953
ZraI GACGTC 1 cut(s) 1088
Zsp2I ATGCAT 2 cut(s) 19, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.