FvH4_4g06910

Plant intracellular ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014334
Physical Location & Seq
Reverse (-)
6236633 .. 6239638
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06910.t1

Sequence Viewer

Length: 1062 bp
ATGATGTACGAGCAACAGCAGCAACAACAGCAGCCGCAGCAAGTGAGGATGGATGTGAGGAAGAAGGCAGGTCATGTGAGGAGGAGGTCAATAACGGAAGAAGAGAGGCTTGAGATTGTGGATTTGAGTGGCATGTCTCTTGACGCTTTGCCTAATCCCTCTCTCAATTTGGGGACTATTTGCAAGCTTGATCTTTCCAACAACAATCTCCAGAACATACCAGAATCCTTGACAGCAAGGTTACTAAACGTGGTGGTGTTTGACGTGCACTCAAATCAGCTCAAATCCCTTCCTAACTCGATAGGGTGTTTATCAAAGCTCAAGATTCTCAATGTTTCTGGAAACCTTCTTGAGTCTCTCCCCAAACCTATTGAGAACTGCAGGGCACTGGAAGAGTTGAATGCCAACTTCAACAAGCTCAGCGTGCTCCCAGACACCATTGGATTCGAAATCATCAACCTCAAGAAGCTATCGGTGAACTCGAACAAGCTTGTCTTCTTGCCACGCTCTCTCACCCACCTGACCAATCTGCGCGTACTTGATGCTCGCCTCAACTGCCTCAGGTCTCTACCTGAAGACATGGAGAACCTAATCAACCTGGAAGTTCTCAACGTCAGCCAAAACTTCCAGTACCTGGAAACCCTACCCTACTCCATTGGCCTCCTCATGTCCCTCGTCGAACTGGACGTCAGCTACAACAAGATCACCGCTCTCCCCGACTCCCTCGGATGCCTTAAGAAGCTCCAGAAACTCATAGTCGAAGGGAACCCTATGGTGTCTCCTCCCGGCGAGGTTTTCGAGCAGGGTTTGCATGCAGTGAAGGAGTACCTGAGTGAGAAAATGAACAGTGGACACAAGAGTCCGACCAAGAAGAAATCTTGGGTGGGGAAGTTGGTCAAGTATGGCACCTTCAACGGGGCCAACAGAAGCGTCTCAAGAGATGAGAGAGAAGGGTACATCATGCCGGAGTACCGCTCCATCGACGGCCTTGCTTCGCCGAGGTATATGGGAATGTTCTCTCCCCGTCGTCTCTTCTCGCCTCGTCATTACTTCAGTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

354

Amino Acids

39.98

Weight (kDa)

9.15

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 62 - 117 1.1e-07 Leucine rich repeat
LRR_14 PF23598 63 - 157 3.4e-06 Leucine-rich repeat region
LRR_8 PF13855 199 - 257 6.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 858
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 905
AccB7I CCANNNNNTGG 1 cut(s) 634
AccBSI CCGCTC 2 cut(s) 710, 975
AccII CGCG 1 cut(s) 534
AciI CCGC 3 cut(s) 35, 708, 973
AcuI CTGAAG 2 cut(s) 594, 1036
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 6 cut(s) 8, 537, 632, 827, 956, 971
AfiI CCNNNNNNNGG 2 cut(s) 634, 915
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 3 cut(s) 400, 412, 913
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 597, 633
AluBI AGCT 8 cut(s) 187, 280, 319, 418, 469, 490, 693, 742
AluI AGCT 8 cut(s) 187, 280, 319, 418, 469, 490, 693, 742
Alw21I GWGCWC 2 cut(s) 270, 429
Alw26I GTCTC 6 cut(s) 141, 360, 570, 783, 937, 1034
Alw44I GTGCAC 1 cut(s) 266
AlwNI CAGNNNCTG 2 cut(s) 634, 1059
AoxI GGCC 3 cut(s) 658, 918, 985
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 19, 31, 37
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 918
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 3 cut(s) 487, 505, 697
AsuII TTCGAA 1 cut(s) 447
AxyI CCTNAGG 1 cut(s) 560
BaeGI GKGCMC 2 cut(s) 270, 388
BanI GGYRCC 1 cut(s) 905
BarI GAAGNNNNNNTAC 2 cut(s) 893, 925
BbsI GAAGAC 2 cut(s) 487, 582
Bbv12I GWGCWC 2 cut(s) 270, 429
BbvI GCAGC 3 cut(s) 31, 43, 49
BccI CCATC 2 cut(s) 43, 986
BceAI ACGGC 1 cut(s) 1000
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 2 cut(s) 599, 635
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 6 cut(s) 141, 360, 570, 783, 937, 1034
BfmI CTRYAG 1 cut(s) 379
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 4 cut(s) 20, 32, 35, 38
BlpI GCTNAGC 1 cut(s) 419
BlsI GCNGC 4 cut(s) 21, 33, 36, 39
Bme1390I CCNGG 3 cut(s) 599, 635, 786
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 918
BmiI GGNNCC 3 cut(s) 767, 907, 919
BmrFI CCNGG 3 cut(s) 599, 635, 786
BmsI GCATC 2 cut(s) 532, 719
BpiI GAAGAC 2 cut(s) 487, 582
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 2 cut(s) 194, 728
Bpu1102I GCTNAGC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 447
BpuEI CTTGAG 5 cut(s) 131, 305, 371, 446, 919
BpuMI CCSGG 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 724, 998
Bsc4I CCNNNNNNNGG 2 cut(s) 634, 915
Bse1I ACTGG 3 cut(s) 393, 628, 687
Bse21I CCTNAGG 1 cut(s) 560
BseBI CCWGG 2 cut(s) 599, 635
BseDI CCNNGG 2 cut(s) 724, 998
BseGI GGATG 3 cut(s) 54, 58, 734
BseLI CCNNNNNNNGG 2 cut(s) 634, 915
BseMII CTCAG 3 cut(s) 433, 574, 821
BseNI ACTGG 3 cut(s) 393, 628, 687
BseRI GAGGAG 4 cut(s) 94, 97, 653, 771
BseSI GKGCMC 2 cut(s) 270, 388
BseXI GCAGC 3 cut(s) 31, 43, 49
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 3 cut(s) 660, 920, 987
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 2 cut(s) 270, 429
BsiSI CCGG 2 cut(s) 786, 965
BslFI GGGAC 2 cut(s) 187, 655
BslI CCNNNNNNNGG 2 cut(s) 634, 915
BsmAI GTCTC 6 cut(s) 141, 360, 570, 783, 937, 1034
BsmBI CGTCTC 2 cut(s) 937, 1034
BsmFI GGGAC 2 cut(s) 187, 655
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 660, 920, 987
Bso31I GGTCTC 1 cut(s) 570
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 270, 388, 429
Bsp143I GATC 2 cut(s) 190, 702
Bsp1720I GCTNAGC 1 cut(s) 419
BspACI CCGC 3 cut(s) 35, 708, 973
BspANI GGCC 3 cut(s) 660, 920, 987
BspCNI CTCAG 3 cut(s) 432, 573, 822
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 3 cut(s) 767, 907, 919
BspMAI CTGCAG 1 cut(s) 383
BspMI ACCTGC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 905
BspTI CTTAAG 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 570
BsrBI CCGCTC 2 cut(s) 710, 975
BsrI ACTGG 3 cut(s) 393, 628, 687
BssECI CCNNGG 2 cut(s) 724, 998
BssMI GATC 2 cut(s) 190, 702
BssNI GRCGYC 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 599, 635
Bst4CI ACNGT 1 cut(s) 848
Bst6I CTCTTC 3 cut(s) 96, 387, 1037
BstACI GRCGYC 1 cut(s) 687
BstAFI CTTAAG 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 4 cut(s) 185, 425, 547, 813
BstDEI CTNAG 3 cut(s) 419, 560, 830
BstF5I GGATG 3 cut(s) 54, 58, 734
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 2 cut(s) 193, 705
BstMAI GTCTC 6 cut(s) 141, 360, 570, 783, 937, 1034
BstMBI GATC 2 cut(s) 190, 702
BstMWI GCNNNNNNNGC 6 cut(s) 19, 28, 37, 424, 555, 808
BstNI CCWGG 2 cut(s) 599, 635
BstNSI RCATGY 2 cut(s) 136, 815
BstSCI CCNGG 3 cut(s) 597, 633, 784
BstSFI CTRYAG 1 cut(s) 379
BstSLI GKGCMC 2 cut(s) 270, 388
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 3 cut(s) 31, 43, 49
BstV2I GAAGAC 2 cut(s) 487, 582
Bsu36I CCTNAGG 1 cut(s) 560
BsuRI GGCC 3 cut(s) 660, 920, 987
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 54, 58, 734
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 386, 822, 853
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 4 cut(s) 185, 425, 547, 813
CaiI CAGNNNCTG 2 cut(s) 634, 1059
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 918
CseI GACGC 2 cut(s) 152, 919
Csp6I GTAC 6 cut(s) 7, 536, 631, 826, 955, 970
CviAII CATG 6 cut(s) 74, 133, 580, 667, 812, 961
CviQI GTAC 6 cut(s) 7, 536, 631, 826, 955, 970
DdeI CTNAG 3 cut(s) 419, 560, 830
DpnI GATC 2 cut(s) 192, 704
DpnII GATC 2 cut(s) 190, 702
DrdI GACNNNNNNGTC 1 cut(s) 858
DseDI GACNNNNNNGTC 1 cut(s) 858
Eam1104I CTCTTC 3 cut(s) 96, 387, 1037
EarI CTCTTC 3 cut(s) 96, 387, 1037
Eco31I GGTCTC 1 cut(s) 570
Eco57I CTGAAG 2 cut(s) 594, 1036
Eco81I CCTNAGG 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 597, 633
Esp3I CGTCTC 2 cut(s) 937, 1034
FaeI CATG 6 cut(s) 77, 136, 583, 670, 815, 964
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 479, 511
FaqI GGGAC 2 cut(s) 187, 655
FatI CATG 6 cut(s) 73, 132, 579, 666, 811, 960
Fnu4HI GCNGC 4 cut(s) 20, 32, 35, 38
FokI GGATG 3 cut(s) 61, 65, 741
Fsp4HI GCNGC 4 cut(s) 20, 32, 35, 38
GlaI GCGC 1 cut(s) 533
GluI GCNGC 4 cut(s) 20, 32, 35, 38
GsuI CTGGAG 2 cut(s) 194, 728
HaeIII GGCC 3 cut(s) 660, 920, 987
HapII CCGG 2 cut(s) 786, 965
HgaI GACGC 2 cut(s) 152, 919
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 6 cut(s) 77, 136, 583, 670, 815, 964
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HindIII AAGCTT 2 cut(s) 185, 488
HinfI GANTC 6 cut(s) 224, 325, 353, 444, 719, 859
HpaII CCGG 2 cut(s) 786, 965
HphI GGTGA 3 cut(s) 487, 505, 697
Hpy166II GTNNAC 3 cut(s) 268, 478, 851
Hpy188I TCNGA 2 cut(s) 728, 864
Hpy188III TCNNGA 8 cut(s) 140, 211, 322, 339, 350, 463, 745, 936
Hpy8I GTNNAC 3 cut(s) 268, 478, 851
Hpy99I CGWCG 3 cut(s) 680, 986, 1029
HpyAV CCTTC 7 cut(s) 58, 299, 356, 755, 814, 919, 944
HpyCH4III ACNGT 1 cut(s) 848
HpyCH4IV ACGT 4 cut(s) 249, 264, 612, 687
HpyCH4V TGCA 5 cut(s) 183, 268, 381, 811, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 28, 37, 424, 555, 808
HpyF3I CTNAG 3 cut(s) 419, 560, 830
HpySE526I ACGT 4 cut(s) 249, 264, 612, 687
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 6 cut(s) 77, 136, 583, 670, 815, 964
HspAI GCGC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 190, 702
LmnI GCTCC 3 cut(s) 432, 747, 980
Lsp1109I GCAGC 3 cut(s) 31, 43, 49
LweI GCATC 2 cut(s) 532, 719
MaeII ACGT 4 cut(s) 249, 264, 612, 687
MaeIII GTNAC 1 cut(s) 240
MalI GATC 2 cut(s) 192, 704
MbiI CCGCTC 2 cut(s) 710, 975
MboI GATC 2 cut(s) 190, 702
MboII GAAGA 8 cut(s) 73, 110, 113, 404, 487, 587, 883, 1024
MhlI GDGCHC 3 cut(s) 270, 388, 429
MluCI AATT 1 cut(s) 166
MlyI GAGTC 3 cut(s) 362, 713, 868
MmeI TCCRAC 2 cut(s) 222, 887
MseI TTAA 1 cut(s) 735
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 2 cut(s) 786, 965
MspR9I CCNGG 3 cut(s) 599, 635, 786
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 2 cut(s) 599, 635
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 6 cut(s) 19, 28, 37, 424, 555, 808
NciI CCSGG 1 cut(s) 786
NdeII GATC 2 cut(s) 190, 702
NlaIII CATG 6 cut(s) 77, 136, 583, 670, 815, 964
NlaIV GGNNCC 3 cut(s) 767, 907, 919
NmeAIII GCCGAG 1 cut(s) 1023
NspI RCATGY 2 cut(s) 136, 815
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 815
PcsI WCGNNNNNNNCGW 2 cut(s) 479, 684
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 224, 325, 444
PflMI CCANNNNNTGG 1 cut(s) 634
PkrI GCNGC 4 cut(s) 21, 33, 36, 39
PleI GAGTC 3 cut(s) 361, 713, 867
PpsI GAGTC 3 cut(s) 361, 713, 867
Psp6I CCWGG 2 cut(s) 597, 633
PspGI CCWGG 2 cut(s) 597, 633
PspN4I GGNNCC 3 cut(s) 767, 907, 919
PspPI GGNCC 1 cut(s) 918
PstI CTGCAG 1 cut(s) 383
PstNI CAGNNNCTG 2 cut(s) 634, 1059
RsaI GTAC 6 cut(s) 8, 537, 632, 827, 956, 971
RsaNI GTAC 6 cut(s) 7, 536, 631, 826, 955, 970
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 4 cut(s) 20, 32, 35, 38
Sau3AI GATC 2 cut(s) 190, 702
Sau96I GGNCC 1 cut(s) 918
SchI GAGTC 3 cut(s) 362, 713, 868
ScrFI CCNGG 3 cut(s) 599, 635, 786
SduI GDGCHC 3 cut(s) 270, 388, 429
SfaNI GCATC 2 cut(s) 532, 719
SfcI CTRYAG 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 447
SmlI CTYRAG 6 cut(s) 110, 320, 350, 461, 734, 934
SmoI CTYRAG 6 cut(s) 110, 320, 350, 461, 734, 934
SphI GCATGC 1 cut(s) 815
Sse9I AATT 1 cut(s) 166
SsiI CCGC 3 cut(s) 35, 708, 973
StyD4I CCNGG 3 cut(s) 597, 633, 784
TaaI ACNGT 1 cut(s) 848
TaiI ACGT 4 cut(s) 252, 267, 615, 690
TaqI TCGA 7 cut(s) 299, 447, 482, 678, 759, 798, 981
TasI AATT 1 cut(s) 166
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 3 cut(s) 224, 325, 444
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 3 cut(s) 393, 822, 853
TseI GCWGC 3 cut(s) 19, 31, 37
TspDTI ATGAA 1 cut(s) 857
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 3 cut(s) 393, 822, 853
Van91I CCANNNNNTGG 1 cut(s) 634
Vha464I CTTAAG 1 cut(s) 734
VneI GTGCAC 1 cut(s) 266
XceI RCATGY 2 cut(s) 136, 815
ZraI GACGTC 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.