Prupe.1G072100_v2.0.a1

Plant intracellular ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014334
Physical Location & Seq
Reverse (-)
5111501 .. 5114680
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G072100.1

Sequence Viewer

Length: 1047 bp
ATGATGTACGAACAGCAACAGCACCAGCAGCAAATGAGAATGGATACCAAGAAGAAAGCTGCTCATGAGAGGAAAAAGTCAATGGATGAAGAGAGGCTTGAGATTGTGGATTTGAGTGGGATGTCTCTTGATGCCCTGCCTAATCCTTCCCTTAATTTGGGAACTATTTGCAAGCTTGATCTTTCCAATAACAATCTTCAGAACATACCAGAATCCTTGACAGCAAGGTTACTAAACGTGCTAGTGCTGGACGTGCATTCAAATCAGCTGAAATCTCTTCCAAACTCAATTGGTTGTTTGTCCAAGCTTAAGGTCCTCAATGTTTCTGGAAACCTTCTTGCATTTCTCCCAAAAACCATTGAAAATTGCAGGTCATTGGAAGATCTGAATGCCAACTTCAACAAGCTGAGCCAGCTCCCAGACACCATTGGTTTTGAGCTCCACAACCTCAAGAAGCTATCAGTGAACTCCAACAAGCTTGTCTTCCTACCACGCTCCCTCACCCACCTGTCTTCTTTGCGCGTACTAGACGCTCGTCTCAACTGCCTCAGGTCCCTCCCTGAAGATCTTGAGAACCTTATCAACCTTGAAATTCTCAATGTGAGCCAAAACTTCCAGTACCTCGAAACCCTACCATACTCCATTGGCCTCCTCATGTCTCTTGTCGAATTGGACGTCAGCTACAACAAGATCACGGCTCTACCAGACTCCATCGGATGCCTCAAGAAGCTTCAGAAGCTTACTGTACAAGGCAACCCTATGTCTTCGCCTCCTCCTGAGGTGTTTGAGCAAGGATTGCATTCAGTGAAGGAGTACCTTAGTGAGAAAATGAATGGGGGACACAAGAGCCCACCCAAGAAGAAGTCTTGGATGGGCAAGTTGGTCAAGTACGGCACATTCAACGGGGCTCGAAGCGTATCCCGGGAGGAGAAAGAAGGGTTCATCATGCCCGAGTATCGCTCCATCGACGGCCTTGCTTCCCCGAGGTACATGGGGATGTTCTCACCACGTCGCCTCTTCTCTCCCCGTAATTACTTCACTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

349

Amino Acids

39.39

Weight (kDa)

9.2

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 360
AccII CGCG 1 cut(s) 522
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 3 cut(s) 182, 582, 716
AcyI GRCGYC 1 cut(s) 675
AdeI CACNNNGTG 1 cut(s) 1044
AfaI GTAC 7 cut(s) 8, 525, 620, 747, 815, 890, 989
AfiI CCNNNNNNNGG 1 cut(s) 157
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 5 cut(s) 261, 362, 400, 590, 901
AjiI CACGTC 2 cut(s) 253, 1010
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 3 cut(s) 129, 542, 663
Ama87I CYCGRG 3 cut(s) 921, 950, 982
AoxI GGCC 2 cut(s) 646, 970
ApeKI GCWGC 2 cut(s) 28, 59
ApoI RAATTY 1 cut(s) 591
ArsI GACNNNNNNTTYG 2 cut(s) 660, 692
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 2 cut(s) 313, 552
AsuC2I CCSGG 2 cut(s) 922, 923
AsuHPI GGTGA 2 cut(s) 493, 996
AvaI CYCGRG 3 cut(s) 921, 950, 982
AvaII GGWCC 2 cut(s) 313, 552
AxyI CCTNAGG 2 cut(s) 548, 777
BanII GRGCYC 3 cut(s) 441, 851, 910
BbsI GAAGAC 3 cut(s) 475, 504, 756
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 40, 46
BccI CCATC 3 cut(s) 719, 865, 971
BceAI ACGGC 3 cut(s) 711, 907, 985
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciVI GTATCC 2 cut(s) 37, 928
BcnI CCSGG 2 cut(s) 922, 923
BcoDI GTCTC 3 cut(s) 129, 542, 663
BfaI CTAG 2 cut(s) 242, 527
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 360
BfuI GTATCC 2 cut(s) 37, 928
BglII AGATCT 2 cut(s) 382, 565
BisI GCNGC 2 cut(s) 29, 60
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 2 cut(s) 30, 61
Bme1390I CCNGG 2 cut(s) 922, 923
Bme18I GGWCC 2 cut(s) 313, 552
BmeT110I CYCGRG 3 cut(s) 921, 950, 982
BmgBI CACGTC 2 cut(s) 253, 1010
BmgT120I GGNCC 2 cut(s) 313, 552
BmiI GGNNCC 1 cut(s) 554
BmrFI CCNGG 2 cut(s) 922, 923
BmsI GCATC 2 cut(s) 121, 707
BoxI GACNNNNGTC 1 cut(s) 534
BpiI GAAGAC 3 cut(s) 475, 504, 756
BplI GAGNNNNNCTC 2 cut(s) 944, 976
Bpu1102I GCTNAGC 1 cut(s) 407
BpuEI CTTGAG 4 cut(s) 119, 434, 590, 707
BpuMI CCSGG 2 cut(s) 922, 923
BsaHI GRCGYC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 921, 983
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 616
Bse21I CCTNAGG 2 cut(s) 548, 777
BseDI CCNNGG 2 cut(s) 921, 983
BseGI GGATG 5 cut(s) 91, 126, 722, 876, 1002
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 3 cut(s) 398, 562, 768
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 3 cut(s) 641, 762, 941
BseXI GCAGC 2 cut(s) 40, 46
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 2 cut(s) 648, 972
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 3 cut(s) 921, 950, 982
BsiSI CCGG 1 cut(s) 922
BslFI GGGAC 2 cut(s) 538, 852
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 3 cut(s) 129, 542, 663
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 2 cut(s) 538, 852
BsmI GAATGC 3 cut(s) 256, 394, 799
BsnI GGCC 2 cut(s) 648, 972
BsoBI CYCGRG 3 cut(s) 921, 950, 982
Bsp1286I GDGCHC 3 cut(s) 441, 851, 910
Bsp1407I TGTACA 1 cut(s) 745
Bsp143I GATC 4 cut(s) 178, 382, 565, 690
Bsp1720I GCTNAGC 1 cut(s) 407
BspANI GGCC 2 cut(s) 648, 972
BspCNI CTCAG 3 cut(s) 399, 561, 769
BspFNI CGCG 1 cut(s) 522
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 554
BspMI ACCTGC 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 745
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 921, 983
BssMI GATC 4 cut(s) 178, 382, 565, 690
BssNI GRCGYC 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 3 cut(s) 84, 282, 1022
BstACI GRCGYC 1 cut(s) 675
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 796
BstAUI TGTACA 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 173, 413
BstDEI CTNAG 4 cut(s) 407, 548, 777, 818
BstF5I GGATG 5 cut(s) 91, 126, 722, 876, 1002
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 4 cut(s) 181, 385, 568, 693
BstMAI GTCTC 3 cut(s) 129, 542, 663
BstMBI GATC 4 cut(s) 178, 382, 565, 690
BstMWI GCNNNNNNNGC 5 cut(s) 28, 253, 412, 736, 796
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 2 cut(s) 920, 921
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 40, 46
BstV2I GAAGAC 3 cut(s) 475, 504, 756
BstX2I RGATCY 2 cut(s) 382, 565
BstYI RGATCY 2 cut(s) 382, 565
Bsu36I CCTNAGG 2 cut(s) 548, 777
BsuI GTATCC 2 cut(s) 37, 928
BsuRI GGCC 2 cut(s) 648, 972
BtrI CACGTC 2 cut(s) 253, 1010
BtsCI GGATG 5 cut(s) 91, 126, 722, 876, 1002
BtsIMutI CAGTG 2 cut(s) 468, 810
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 173, 413
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 522
Cfr13I GGNCC 2 cut(s) 313, 552
Cfr9I CCCGGG 1 cut(s) 921
CseI GACGC 1 cut(s) 539
Csp6I GTAC 7 cut(s) 7, 524, 619, 746, 814, 889, 988
CviAII CATG 4 cut(s) 65, 655, 946, 991
CviQI GTAC 7 cut(s) 7, 524, 619, 746, 814, 889, 988
DdeI CTNAG 4 cut(s) 407, 548, 777, 818
DpnI GATC 4 cut(s) 180, 384, 567, 692
DpnII GATC 4 cut(s) 178, 382, 565, 690
DraIII CACNNNGTG 1 cut(s) 1044
Eam1104I CTCTTC 3 cut(s) 84, 282, 1022
EarI CTCTTC 3 cut(s) 84, 282, 1022
Ecl136II GAGCTC 1 cut(s) 439
Eco24I GRGCYC 3 cut(s) 441, 851, 910
Eco47I GGWCC 2 cut(s) 313, 552
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 3 cut(s) 182, 582, 716
Eco81I CCTNAGG 2 cut(s) 548, 777
Eco88I CYCGRG 3 cut(s) 921, 950, 982
EcoICRI GAGCTC 1 cut(s) 439
EcoO109I RGGNCCY 2 cut(s) 313, 552
EcoT38I GRGCYC 3 cut(s) 441, 851, 910
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 4 cut(s) 68, 658, 949, 994
FaiI YATR 7 cut(s) 66, 206, 637, 656, 761, 947, 992
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 467, 499
FaqI GGGAC 2 cut(s) 538, 852
FatI CATG 4 cut(s) 64, 654, 945, 990
Fnu4HI GCNGC 2 cut(s) 29, 60
FokI GGATG 5 cut(s) 98, 133, 729, 883, 1009
FriOI GRGCYC 3 cut(s) 441, 851, 910
Fsp4HI GCNGC 2 cut(s) 29, 60
FspBI CTAG 2 cut(s) 242, 527
GlaI GCGC 1 cut(s) 521
GluI GCNGC 2 cut(s) 29, 60
HaeIII GGCC 2 cut(s) 648, 972
HapII CCGG 1 cut(s) 922
HgaI GACGC 1 cut(s) 539
HhaI GCGC 1 cut(s) 522
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 4 cut(s) 68, 658, 949, 994
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HindIII AAGCTT 5 cut(s) 173, 305, 476, 728, 737
HinfI GANTC 2 cut(s) 212, 707
HpaII CCGG 1 cut(s) 922
HphI GGTGA 2 cut(s) 493, 996
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 4 cut(s) 201, 387, 716, 735
Hpy188III TCNNGA 7 cut(s) 65, 128, 327, 451, 569, 724, 776
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 2 cut(s) 971, 1014
HpyAV CCTTC 4 cut(s) 156, 344, 802, 929
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 4 cut(s) 237, 252, 675, 1009
HpyCH4V TGCA 5 cut(s) 171, 256, 341, 369, 799
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 253, 412, 736, 796
HpyF3I CTNAG 4 cut(s) 407, 548, 777, 818
HpySE526I ACGT 4 cut(s) 237, 252, 675, 1009
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 4 cut(s) 68, 658, 949, 994
HspAI GCGC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 178, 382, 565, 690
LmnI GCTCC 4 cut(s) 420, 444, 500, 965
Lsp1109I GCAGC 2 cut(s) 40, 46
LweI GCATC 2 cut(s) 121, 707
MaeI CTAG 2 cut(s) 242, 527
MaeII ACGT 4 cut(s) 237, 252, 675, 1009
MaeIII GTNAC 1 cut(s) 228
MalI GATC 4 cut(s) 180, 384, 567, 692
MboI GATC 4 cut(s) 178, 382, 565, 690
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 2 cut(s) 382, 565
MhlI GDGCHC 3 cut(s) 441, 851, 910
MluCI AATT 6 cut(s) 154, 288, 364, 591, 668, 1030
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 495
MseI TTAA 2 cut(s) 153, 309
MslI CAYNNNNRTG 1 cut(s) 995
MspA1I CMGCKG 1 cut(s) 268
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 1 cut(s) 922
MspR9I CCNGG 2 cut(s) 922, 923
MunI CAATTG 1 cut(s) 288
Mva1269I GAATGC 3 cut(s) 256, 394, 799
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 5 cut(s) 28, 253, 412, 736, 796
NciI CCSGG 2 cut(s) 922, 923
NdeII GATC 4 cut(s) 178, 382, 565, 690
NlaIII CATG 4 cut(s) 68, 658, 949, 994
NlaIV GGNNCC 1 cut(s) 554
PagI TCATGA 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PctI GAATGC 3 cut(s) 256, 394, 799
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 30, 61
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PpuMI RGGWCCY 2 cut(s) 313, 552
PshAI GACNNNNGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 441
Psp5II RGGWCCY 2 cut(s) 313, 552
PspN4I GGNNCC 1 cut(s) 554
PspPI GGNCC 2 cut(s) 313, 552
PspPPI RGGWCCY 2 cut(s) 313, 552
PsuI RGATCY 2 cut(s) 382, 565
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 7 cut(s) 8, 525, 620, 747, 815, 890, 989
RsaNI GTAC 7 cut(s) 7, 524, 619, 746, 814, 889, 988
RseI CAYNNNNRTG 1 cut(s) 995
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 153, 309
SatI GCNGC 2 cut(s) 29, 60
Sau3AI GATC 4 cut(s) 178, 382, 565, 690
Sau96I GGNCC 2 cut(s) 313, 552
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 922, 923
SduI GDGCHC 3 cut(s) 441, 851, 910
SfaNI GCATC 2 cut(s) 121, 707
SinI GGWCC 2 cut(s) 313, 552
SmaI CCCGGG 1 cut(s) 923
SmiMI CAYNNNNRTG 1 cut(s) 995
SmlI CTYRAG 5 cut(s) 98, 308, 449, 569, 722
SmoI CTYRAG 5 cut(s) 98, 308, 449, 569, 722
Sse9I AATT 6 cut(s) 154, 288, 364, 591, 668, 1030
SspMI CTAG 2 cut(s) 242, 527
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 920, 921
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 4 cut(s) 240, 255, 678, 1012
TaqI TCGA 4 cut(s) 624, 666, 910, 966
TasI AATT 6 cut(s) 154, 288, 364, 591, 668, 1030
TatI WGTACW 1 cut(s) 745
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 153, 309
Tru9I TTAA 2 cut(s) 153, 309
TscAI CASTG 2 cut(s) 468, 810
TseI GCWGC 2 cut(s) 28, 59
TspDTI ATGAA 3 cut(s) 102, 845, 931
TspMI CCCGGG 1 cut(s) 921
TspRI CASTG 2 cut(s) 468, 810
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 313, 552
XapI RAATTY 1 cut(s) 591
XmaI CCCGGG 1 cut(s) 921
XspI CTAG 2 cut(s) 242, 527
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.