Rorug04G0012000

Plant intracellular ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014334
Physical Location & Seq
Reverse (-)
1954147 .. 1954758
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0012000.1

Sequence Viewer

Length: 612 bp
ATGCACAATGTTACCTGTGTCAAAAAAGAATGGCTTGTCGAGTATGCTCGGTCTTTATGCACTTTACCTGACCCCAAAAAAGGTACCAGACATCGTTATGATCCAATAACAGACCAGGTAGTACATAATGTCGTTCCAACCTTTGGTGATCATTTGTGTGATCTTCCACCGCATCCTCGGGCAATTAGTGAGTTTGAAGATCGAGTGAAAGCTTTTGCTTTTGCTTTGCTTGATGGCCAAGTATTTCCTTGCTTAAAACCTGTTAGCAAGTCAAGAGATCCTCCTCCTGCTATTGTTTTAAGGCCATTAGAATTAGTTCCAAAACAGATTTGGAATCACCTGGAGAAGCTCAAGACAAAAAACATAGACAGCTGTGCTACGTTACGAGAGGTCTGGAAGGTTAATCCCTGGGAATTGTATCAAGAAATCGGGGAATGTAAAAAGAGTCTCCACAGTAAATTTGGATCTCTCTGGTTAGATATGCTTAAACAAGTTGGTTCAGACTTCAGACCTCCCACGATGATTTCACAATTGAATCAAAATAAGGCAACGGCTGGTGTTGGAGTTGGACCAACGTATAGTATTTACATTGATGTCTTTTTAGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

203

Amino Acids

23.12

Weight (kDa)

8.7

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 143
AciI CCGC 1 cut(s) 170
AclWI GGATC 3 cut(s) 95, 272, 472
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 490
AfaI GTAC 2 cut(s) 85, 123
AfiI CCNNNNNNNGG 2 cut(s) 80, 143
AgsI TTSAA 2 cut(s) 197, 535
AjnI CCWGG 3 cut(s) 114, 339, 407
AluBI AGCT 3 cut(s) 212, 349, 372
AluI AGCT 3 cut(s) 212, 349, 372
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 3 cut(s) 95, 272, 472
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 2 cut(s) 235, 302
ApoI RAATTY 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 315
Asp718I GGTACC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 158, 329
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 83
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 3 cut(s) 116, 341, 409
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 452
Bme1390I CCNGG 3 cut(s) 116, 341, 409
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 116, 341, 409
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 176, 407, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 143
BseBI CCWGG 3 cut(s) 116, 341, 409
BseDI CCNNGG 3 cut(s) 176, 407, 408
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 80, 143
BseRI GAGGAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 237, 304
BshNI GGYRCC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 80, 143
BsmAI GTCTC 1 cut(s) 452
BsnI GGCC 2 cut(s) 237, 304
BsoBI CYCGRG 1 cut(s) 177
Bsp143I GATC 6 cut(s) 100, 148, 160, 199, 277, 464
BspACI CCGC 1 cut(s) 170
BspANI GGCC 2 cut(s) 237, 304
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 3 cut(s) 95, 272, 472
BspT107I GGYRCC 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 176, 407, 408
BssMI GATC 6 cut(s) 100, 148, 160, 199, 277, 464
Bst2UI CCWGG 3 cut(s) 116, 341, 409
Bst4CI ACNGT 1 cut(s) 455
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 6 cut(s) 103, 151, 163, 202, 280, 467
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 6 cut(s) 100, 148, 160, 199, 277, 464
BstNI CCWGG 3 cut(s) 116, 341, 409
BstSCI CCNGG 3 cut(s) 114, 339, 407
BstX2I RGATCY 2 cut(s) 277, 464
BstYI RGATCY 2 cut(s) 277, 464
BsuRI GGCC 2 cut(s) 237, 304
BtsCI GGATG 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 569
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 84, 122
CviJI RGCY 7 cut(s) 34, 212, 237, 304, 349, 372, 554
CviKI_1 RGCY 7 cut(s) 34, 212, 237, 304, 349, 372, 554
CviQI GTAC 2 cut(s) 84, 122
DpnI GATC 6 cut(s) 102, 150, 162, 201, 279, 466
DpnII GATC 6 cut(s) 100, 148, 160, 199, 277, 464
EaeI YGGCCR 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 177
EcoRII CCWGG 3 cut(s) 114, 339, 407
FaiI YATR 7 cut(s) 45, 58, 99, 126, 365, 482, 579
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FbaI TGATCA 1 cut(s) 148
FokI GGATG 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 2 cut(s) 237, 304
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 3 cut(s) 334, 445, 535
HphI GGTGA 2 cut(s) 158, 329
Hpy188I TCNGA 2 cut(s) 502, 509
Hpy188III TCNNGA 4 cut(s) 273, 352, 394, 422
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 2 cut(s) 380, 575
HpyCH4V TGCA 2 cut(s) 4, 60
HpySE526I ACGT 2 cut(s) 380, 575
KpnI GGTACC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 6 cut(s) 100, 148, 160, 199, 277, 464
LweI GCATC 1 cut(s) 181
MabI ACCWGGT 1 cut(s) 114
MaeII ACGT 2 cut(s) 380, 575
MaeIII GTNAC 3 cut(s) 10, 381, 604
MalI GATC 6 cut(s) 102, 150, 162, 201, 279, 466
MboI GATC 6 cut(s) 100, 148, 160, 199, 277, 464
MboII GAAGA 2 cut(s) 155, 209
MfeI CAATTG 1 cut(s) 530
MflI RGATCY 2 cut(s) 277, 464
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 5 cut(s) 183, 311, 413, 458, 530
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 3 cut(s) 161, 541, 547
MnlI CCTC 5 cut(s) 186, 291, 294, 382, 522
Mox20I TGGCCA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 1 cut(s) 237
MseI TTAA 4 cut(s) 254, 299, 402, 486
MslI CAYNNNNRTG 2 cut(s) 96, 156
Msp20I TGGCCA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 116, 341, 409
MunI CAATTG 1 cut(s) 530
MvaI CCWGG 3 cut(s) 116, 341, 409
NdeII GATC 6 cut(s) 100, 148, 160, 199, 277, 464
NlaIV GGNNCC 1 cut(s) 85
PasI CCCWGGG 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 334, 535
PflMI CCANNNNNTGG 1 cut(s) 143
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
Psp6I CCWGG 3 cut(s) 114, 339, 407
PspGI CCWGG 3 cut(s) 114, 339, 407
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 569
PsuI RGATCY 2 cut(s) 277, 464
PvuII CAGCTG 1 cut(s) 372
RsaI GTAC 2 cut(s) 85, 123
RsaNI GTAC 2 cut(s) 84, 122
RseI CAYNNNNRTG 2 cut(s) 96, 156
SaqAI TTAA 4 cut(s) 254, 299, 402, 486
Sau3AI GATC 6 cut(s) 100, 148, 160, 199, 277, 464
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 3 cut(s) 116, 341, 409
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 2 cut(s) 96, 156
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 5 cut(s) 183, 311, 413, 458, 530
SsiI CCGC 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 114, 339, 407
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 2 cut(s) 383, 578
TaqI TCGA 2 cut(s) 39, 202
TaqII GACCGA 1 cut(s) 39
TasI AATT 5 cut(s) 183, 311, 413, 458, 530
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 2 cut(s) 334, 535
Tru1I TTAA 4 cut(s) 254, 299, 402, 486
Tru9I TTAA 4 cut(s) 254, 299, 402, 486
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 2 cut(s) 327, 458
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.