Rh4DG081400

Plant intracellular ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014334
Physical Location & Seq
Reverse (-)
12160162 .. 12163590
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG081400.1

Sequence Viewer

Length: 1062 bp
ATGATGTACGAGCAACAGCAGCAACAACAGCAGCCGCAGCAAGTGAGGATGGATATCAGGAAGAAGGCTGGTCATGAGAGGAGGAAGTCGATAACCGAAGAAGAGAGGCTTGAGATTGTGGATTTGAGTGGGATGTCTCTTGATGCCTTGCCTAATCCCTCTCTCAATTTGGGGAGTATTTGCAAGCTTGATCTTTCCAATAACAATCTCCAGAACATACCAGAATCCTTGACAGCAAGGTTACTGAACGTGGTGGTGTTCGACGTGCACTCAAATCAGCTGAAGTCCCTTCCAAACTCAATTGGGTGTTTGTCAAAGCTCAAGATTCTCAATGTTTCTGGAAACCTTCTTGAATCTCTCCCCAAACCTATTGAAAATTGCAGGTCACTGGAAGAGTTGAATGCCAACTTCAACAAGATCAGCGTGCTCCCAGATACCATTGGATTCGAAGTTATCAACCTCAAGAAGCTATCCGTGAACTCCAACAAGCTTGTCTTCTTGCCACGCTCTCTCAGCCACCTGACCAATCTGCGGGTACTAGATGCTCGCCTCAATTGCCTCAGGTCTCTTCCTGAAGACCTTGAGAACCTCATCAACCTCGAAGTTCTCAATGTCAGCCAAAACTTCCAGTACCTGGAAACCCTACCCTACTCCATTGGCCTCCTCATGTCCCTTGTCGAACTGGACGTCAGCTACAACAAGATCACCGCCCTCCCAGACTCCATCGGATGTCTCAAGAAGCTCCAGAAGCTCATTGTCGAAGGGAACCCTATGGTCTCGCCTCCAGTCGAGGTTTTCGAGCAGGGTTTGCATGCGGTGAGGGAGTACCTAAGTGAGAAAATGAATGGTGGACACAAGAGTCCAACCAAGAAGAAATCTTGGGTGGGGAAGTTGGTGAAATATGGCACCTTCAACGGGGCCAACAGAAGCGTCTCTCGAGAGGAGAGAGAAGGGTACATCATGCCTGAGTACCGCTCCATCGACGGCCTTGCTTCCCCGAGGTATATGGGAATGTTCTCTCCCCGTCGTCTATTCTCGCCTCGTCATTACTTCAGTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

353

Amino Acids

40.01

Weight (kDa)

9.05

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 62 - 117 1e-07 Leucine rich repeat
LRR_14 PF23598 63 - 138 7.1e-07 Leucine-rich repeat region
LRR_8 PF13855 128 - 183 3.1e-06 Leucine rich repeat
LRR_14 PF23598 193 - 256 8.3e-07 Leucine-rich repeat region
LRR_8 PF13855 199 - 257 6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 858
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 905
AccB7I CCANNNNNTGG 1 cut(s) 634
AccBSI CCGCTC 1 cut(s) 975
AciI CCGC 5 cut(s) 35, 532, 708, 815, 973
AcuI CTGAAG 3 cut(s) 302, 594, 1036
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 6 cut(s) 8, 537, 632, 827, 956, 971
AfiI CCNNNNNNNGG 3 cut(s) 531, 634, 915
AgsI TTSAA 5 cut(s) 353, 374, 400, 412, 913
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 8 cut(s) 187, 280, 319, 469, 490, 693, 742, 751
AluI AGCT 8 cut(s) 187, 280, 319, 469, 490, 693, 742, 751
Alw21I GWGCWC 2 cut(s) 270, 429
Alw26I GTCTC 5 cut(s) 141, 570, 737, 781, 937
Alw44I GTGCAC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 2 cut(s) 936, 997
AoxI GGCC 3 cut(s) 658, 918, 985
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 19, 31, 37
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspS9I GGNCC 1 cut(s) 918
AsuHPI GGTGA 3 cut(s) 697, 829, 907
AsuII TTCGAA 1 cut(s) 447
AvaI CYCGRG 2 cut(s) 936, 997
AxyI CCTNAGG 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 487, 582
Bbv12I GWGCWC 2 cut(s) 270, 429
BbvI GCAGC 3 cut(s) 31, 43, 49
BccI CCATC 3 cut(s) 43, 731, 986
BceAI ACGGC 1 cut(s) 1000
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 1 cut(s) 635
BcoDI GTCTC 5 cut(s) 141, 570, 737, 781, 937
BfaI CTAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 372
BisI GCNGC 4 cut(s) 20, 32, 35, 38
BlsI GCNGC 4 cut(s) 21, 33, 36, 39
Bme1390I CCNGG 1 cut(s) 635
BmeT110I CYCGRG 2 cut(s) 936, 997
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 918
BmiI GGNNCC 3 cut(s) 767, 907, 919
BmrFI CCNGG 1 cut(s) 635
BmsI GCATC 2 cut(s) 133, 532
BpiI GAAGAC 2 cut(s) 487, 582
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 3 cut(s) 194, 728, 768
Bpu14I TTCGAA 1 cut(s) 447
BpuEI CTTGAG 5 cut(s) 131, 305, 446, 602, 719
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 687
BsaI GGTCTC 2 cut(s) 570, 781
BsaJI CCNNGG 1 cut(s) 998
Bsc4I CCNNNNNNNGG 3 cut(s) 531, 634, 915
Bse1I ACTGG 4 cut(s) 393, 628, 687, 785
Bse21I CCTNAGG 1 cut(s) 560
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 998
BseGI GGATG 3 cut(s) 54, 138, 734
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 531, 634, 915
BseMII CTCAG 3 cut(s) 526, 574, 957
BseNI ACTGG 4 cut(s) 393, 628, 687, 785
BseRI GAGGAG 3 cut(s) 94, 653, 956
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 3 cut(s) 31, 43, 49
BshFI GGCC 3 cut(s) 660, 920, 987
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 2 cut(s) 270, 429
BsiHKCI CYCGRG 2 cut(s) 936, 997
BslFI GGGAC 2 cut(s) 271, 655
BslI CCNNNNNNNGG 3 cut(s) 531, 634, 915
BsmAI GTCTC 5 cut(s) 141, 570, 737, 781, 937
BsmBI CGTCTC 1 cut(s) 937
BsmFI GGGAC 2 cut(s) 271, 655
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 660, 920, 987
Bso31I GGTCTC 2 cut(s) 570, 781
BsoBI CYCGRG 2 cut(s) 936, 997
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 270, 429
Bsp143I GATC 3 cut(s) 190, 417, 702
BspACI CCGC 5 cut(s) 35, 532, 708, 815, 973
BspANI GGCC 3 cut(s) 660, 920, 987
BspCNI CTCAG 3 cut(s) 525, 573, 958
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 767, 907, 919
BspMI ACCTGC 1 cut(s) 372
BspT104I TTCGAA 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 905
BspTNI GGTCTC 2 cut(s) 570, 781
BsrBI CCGCTC 1 cut(s) 975
BsrI ACTGG 4 cut(s) 393, 628, 687, 785
BssECI CCNNGG 1 cut(s) 998
BssMI GATC 3 cut(s) 190, 417, 702
BssNI GRCGYC 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 635
Bst6I CTCTTC 3 cut(s) 96, 387, 573
BstACI GRCGYC 1 cut(s) 687
BstAPI GCANNNNNTGC 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 4 cut(s) 185, 425, 547, 813
BstDEI CTNAG 4 cut(s) 512, 560, 830, 966
BstF5I GGATG 3 cut(s) 54, 138, 734
BstKTI GATC 3 cut(s) 193, 420, 705
BstMAI GTCTC 5 cut(s) 141, 570, 737, 781, 937
BstMBI GATC 3 cut(s) 190, 417, 702
BstMWI GCNNNNNNNGC 7 cut(s) 19, 28, 37, 513, 555, 748, 808
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 31, 43, 49
BstV2I GAAGAC 2 cut(s) 487, 582
Bsu36I CCTNAGG 1 cut(s) 560
BsuRI GGCC 3 cut(s) 660, 920, 987
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 54, 138, 734
BtsIMutI CAGTG 1 cut(s) 386
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 4 cut(s) 185, 425, 547, 813
CaiI CAGNNNCTG 1 cut(s) 634
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 918
CseI GACGC 1 cut(s) 919
Csp6I GTAC 6 cut(s) 7, 536, 631, 826, 955, 970
CviAII CATG 4 cut(s) 74, 667, 812, 961
CviQI GTAC 6 cut(s) 7, 536, 631, 826, 955, 970
DdeI CTNAG 4 cut(s) 512, 560, 830, 966
DpnI GATC 3 cut(s) 192, 419, 704
DpnII GATC 3 cut(s) 190, 417, 702
DrdI GACNNNNNNGTC 1 cut(s) 858
DseDI GACNNNNNNGTC 1 cut(s) 858
Eam1104I CTCTTC 3 cut(s) 96, 387, 573
EarI CTCTTC 3 cut(s) 96, 387, 573
Eco31I GGTCTC 2 cut(s) 570, 781
Eco32I GATATC 1 cut(s) 55
Eco57I CTGAAG 3 cut(s) 302, 594, 1036
Eco81I CCTNAGG 1 cut(s) 560
Eco88I CYCGRG 2 cut(s) 936, 997
EcoRII CCWGG 1 cut(s) 633
EcoRV GATATC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 937
FaeI CATG 4 cut(s) 77, 670, 815, 964
FaiI YATR 9 cut(s) 75, 218, 668, 773, 813, 903, 962, 1005, 1007
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 479, 511
FaqI GGGAC 2 cut(s) 271, 655
FatI CATG 4 cut(s) 73, 666, 811, 960
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 20, 32, 35, 38
FokI GGATG 3 cut(s) 61, 145, 741
Fsp4HI GCNGC 4 cut(s) 20, 32, 35, 38
FspBI CTAG 1 cut(s) 539
GluI GCNGC 4 cut(s) 20, 32, 35, 38
GsuI CTGGAG 3 cut(s) 194, 728, 768
HaeIII GGCC 3 cut(s) 660, 920, 987
HgaI GACGC 1 cut(s) 919
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 4 cut(s) 77, 670, 815, 964
HindIII AAGCTT 2 cut(s) 185, 488
HinfI GANTC 6 cut(s) 224, 325, 353, 444, 719, 859
HphI GGTGA 3 cut(s) 697, 829, 907
Hpy166II GTNNAC 3 cut(s) 268, 478, 851
Hpy188I TCNGA 1 cut(s) 728
Hpy8I GTNNAC 3 cut(s) 268, 478, 851
Hpy99I CGWCG 3 cut(s) 266, 986, 1029
HpyAV CCTTC 6 cut(s) 58, 299, 356, 755, 919, 944
HpyCH4IV ACGT 3 cut(s) 249, 264, 687
HpyCH4V TGCA 4 cut(s) 183, 268, 381, 811
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 28, 37, 513, 555, 748, 808
HpyF3I CTNAG 4 cut(s) 512, 560, 830, 966
HpySE526I ACGT 3 cut(s) 249, 264, 687
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 4 cut(s) 77, 670, 815, 964
Kzo9I GATC 3 cut(s) 190, 417, 702
LmnI GCTCC 3 cut(s) 432, 747, 980
Lsp1109I GCAGC 3 cut(s) 31, 43, 49
LweI GCATC 2 cut(s) 133, 532
MaeI CTAG 1 cut(s) 539
MaeII ACGT 3 cut(s) 249, 264, 687
MaeIII GTNAC 2 cut(s) 240, 384
MalI GATC 3 cut(s) 192, 419, 704
MbiI CCGCTC 1 cut(s) 975
MboI GATC 3 cut(s) 190, 417, 702
MboII GAAGA 8 cut(s) 73, 110, 113, 404, 487, 560, 587, 883
MfeI CAATTG 2 cut(s) 300, 553
MhlI GDGCHC 2 cut(s) 270, 429
MluCI AATT 4 cut(s) 166, 300, 376, 553
MlyI GAGTC 2 cut(s) 713, 868
MmeI TCCRAC 2 cut(s) 507, 887
MspA1I CMGCKG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 635
MunI CAATTG 2 cut(s) 300, 553
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 7 cut(s) 19, 28, 37, 513, 555, 748, 808
NdeII GATC 3 cut(s) 190, 417, 702
NlaIII CATG 4 cut(s) 77, 670, 815, 964
NlaIV GGNNCC 3 cut(s) 767, 907, 919
NmuCI GTSAC 1 cut(s) 384
NspI RCATGY 1 cut(s) 815
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 815
PaeR7I CTCGAG 1 cut(s) 936
PagI TCATGA 1 cut(s) 73
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 795
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 4 cut(s) 224, 325, 353, 444
PflMI CCANNNNNTGG 1 cut(s) 634
PkrI GCNGC 4 cut(s) 21, 33, 36, 39
PleI GAGTC 2 cut(s) 713, 867
PpsI GAGTC 2 cut(s) 713, 867
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 3 cut(s) 767, 907, 919
PspPI GGNCC 1 cut(s) 918
PstNI CAGNNNCTG 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 6 cut(s) 8, 537, 632, 827, 956, 971
RsaNI GTAC 6 cut(s) 7, 536, 631, 826, 955, 970
SatI GCNGC 4 cut(s) 20, 32, 35, 38
Sau3AI GATC 3 cut(s) 190, 417, 702
Sau96I GGNCC 1 cut(s) 918
SchI GAGTC 2 cut(s) 713, 868
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 2 cut(s) 270, 429
SfaNI GCATC 2 cut(s) 133, 532
Sfr274I CTCGAG 1 cut(s) 936
SfuI TTCGAA 1 cut(s) 447
SlaI CTCGAG 1 cut(s) 936
SmlI CTYRAG 6 cut(s) 110, 320, 461, 581, 734, 936
SmoI CTYRAG 6 cut(s) 110, 320, 461, 581, 734, 936
SphI GCATGC 1 cut(s) 815
Sse9I AATT 4 cut(s) 166, 300, 376, 553
SsiI CCGC 5 cut(s) 35, 532, 708, 815, 973
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 633
TaiI ACGT 3 cut(s) 252, 267, 690
TasI AATT 4 cut(s) 166, 300, 376, 553
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 4 cut(s) 224, 325, 353, 444
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 3 cut(s) 19, 31, 37
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 857
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 1 cut(s) 393
Van91I CCANNNNNTGG 1 cut(s) 634
VneI GTGCAC 1 cut(s) 266
XceI RCATGY 1 cut(s) 815
XhoI CTCGAG 1 cut(s) 936
XspI CTAG 1 cut(s) 539
ZraI GACGTC 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.