pycom13g21190

Plant intracellular ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014334
Physical Location & Seq
Reverse (-)
17453650 .. 17456528
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21190.3

Sequence Viewer

Length: 957 bp
ATGATGTACGAGCAGCAGCAGCAGCAAATTAGAATGGACACGAATAAAAAAGCTGCTCATGAGAGGAAGAGATCGATAGAAGAAGAGAGGCTTGAAATTGTGGATTTGAGTGGGATGTCTCTTGATGCCCTTCCCAATCCTTCCCTTAATTTGGGGACTATTTGCAAGCTTGACCTTTCCAATAACAATCTTCAGAACATACCAGAATCCTTAACAGCAAGATTACTAAACGTGGTAGTGCTGGACGTGCACTCAAATCAGCTGAAATCTCTTCCAAACTCAATTGGTTGTTTGTCCAAGCTTAAGGTTCTCAATGTTGCAGGAAACCTTCTTTCATATCTCCCAAAAACTATTGAAAATTGCAGGTCAATGGAAGAGCTGAATGCCAACTTCAACAAGCTGAGCCACCTCCCAGACACCATTGGTTTTGAACTCAATAACCTCAAGAAGCTATCAGTGAACTCCAACAAGCTTGTCTTTCTACCACGCTCCCTCACCCATCTTACGTCTCTGCGCGTACTCGATGCTCGTCTCAACTGCCTCAGGTCCCTTCCTGAAGATCTTGAGAATCTTATCAACCTTGAAGTTCTCAATGTAAGCCAAAATTTCCAGTACCTCGAAACCCTACCATACTCCATTGGCCTCCTTTTGTCTCTAGTAGAATTGGACGTCAGCTACAACAAGATCACAGCCCTACCAGACTCCATTGGATGCCTCAAGAAGCTTCAGAAGCTTATTGTGGAAGGAAACCCTATGGTTTCTCCTCCTCCTGAGGTGTTTGAGCAAGGTATGGCACGTTCAATGGGGCCAACCGAAGCGGACCTCGAGAGGAGAGAGGAGGGTTCATCATGCCTGAGTACCGCTCAATTGACGGCCTTGCTTCTCCGAGGTATATGGGGATGTTCTCACCCCGTCGCCTCTTCTCTCCCCGTACTTACTTCAGTCGGTGAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

319

Amino Acids

35.21

Weight (kDa)

5.66

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19330 AT4G29880
fragaria_vesca FvH4_4g06910
malus_domestica MD13G1241200.v1.1 MD16G1245200.v1.1
prunus_persica Prupe.1G072100_v2.0.a1
pyrus_communis pycom13g21190
rosa_chinensis RchiOBHm_Chr4g0398811
rosa_laevigata RLG00000009317
rosa_multiflora Rmu_sc0004751.1_g000026
rosa_roxburghii Rroxscaffold_5G00343770
rosa_rugosa Rorug04G0012000
rosa_samantha Rh4AG089700 Rh4BG087100 Rh4CG097700 Rh4DG081400
rosa_wichuraiana Rw4G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 354
AccBSI CCGCTC 1 cut(s) 863
AccII CGCG 1 cut(s) 516
AciI CCGC 2 cut(s) 818, 861
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 4 cut(s) 176, 576, 710, 924
AcyI GRCGYC 1 cut(s) 669
AfaI GTAC 5 cut(s) 8, 519, 614, 859, 933
AfiI CCNNNNNNNGG 1 cut(s) 151
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 6 cut(s) 95, 356, 394, 431, 584, 801
AjiI CACGTC 1 cut(s) 247
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 4 cut(s) 123, 513, 536, 657
Alw44I GTGCAC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 3 cut(s) 640, 806, 873
ApaLI GTGCAC 1 cut(s) 248
ApeKI GCWGC 5 cut(s) 13, 16, 19, 22, 53
ApoI RAATTY 1 cut(s) 604
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 3 cut(s) 546, 806, 820
AsuHPI GGTGA 2 cut(s) 487, 899
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 2 cut(s) 546, 820
AxyI CCTNAGG 2 cut(s) 542, 771
BaeGI GKGCMC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 25, 28, 31, 34, 40
BccI CCATC 1 cut(s) 507
BceAI ACGGC 1 cut(s) 888
BcoDI GTCTC 4 cut(s) 123, 513, 536, 657
BfaI CTAG 1 cut(s) 656
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 559
BisI GCNGC 5 cut(s) 14, 17, 20, 23, 54
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 5 cut(s) 15, 18, 21, 24, 55
Bme18I GGWCC 2 cut(s) 546, 820
BmeT110I CYCGRG 1 cut(s) 824
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 546, 806, 820
BmiI GGNNCC 2 cut(s) 548, 807
BmsI GCATC 3 cut(s) 115, 514, 701
BplI GAGNNNNNCTC 2 cut(s) 847, 879
Bpu1102I GCTNAGC 1 cut(s) 401
BpuEI CTTGAG 3 cut(s) 428, 584, 701
Bsa29I ATCGAT 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 886
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 610
Bse21I CCTNAGG 2 cut(s) 542, 771
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 886
BseGI GGATG 3 cut(s) 120, 716, 905
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 392, 556, 762, 845
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 4 cut(s) 753, 756, 844, 851
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 5 cut(s) 25, 28, 31, 34, 40
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 3 cut(s) 642, 808, 875
BshVI ATCGAT 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 824
BslFI GGGAC 2 cut(s) 169, 532
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 4 cut(s) 123, 513, 536, 657
BsmBI CGTCTC 2 cut(s) 513, 536
BsmFI GGGAC 2 cut(s) 169, 532
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 642, 808, 875
BsoBI CYCGRG 1 cut(s) 824
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 71, 559, 684
Bsp1720I GCTNAGC 1 cut(s) 401
BspACI CCGC 2 cut(s) 818, 861
BspANI GGCC 3 cut(s) 642, 808, 875
BspCNI CTCAG 4 cut(s) 393, 555, 763, 846
BspDI ATCGAT 1 cut(s) 74
BspFNI CGCG 1 cut(s) 516
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 548, 807
BspMI ACCTGC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 863
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 886
BssMI GATC 3 cut(s) 71, 559, 684
BssNI GRCGYC 1 cut(s) 669
Bst6I CTCTTC 5 cut(s) 62, 78, 276, 369, 925
BstACI GRCGYC 1 cut(s) 669
BstAFI CTTAAG 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 4 cut(s) 401, 542, 771, 854
BstF5I GGATG 3 cut(s) 120, 716, 905
BstFNI CGCG 1 cut(s) 516
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 74, 562, 687
BstMAI GTCTC 4 cut(s) 123, 513, 536, 657
BstMBI GATC 3 cut(s) 71, 559, 684
BstMWI GCNNNNNNNGC 4 cut(s) 19, 22, 247, 730
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 5 cut(s) 25, 28, 31, 34, 40
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 74
Bsu36I CCTNAGG 2 cut(s) 542, 771
BsuRI GGCC 3 cut(s) 642, 808, 875
BsuTUI ATCGAT 1 cut(s) 74
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 3 cut(s) 120, 716, 905
BtsIMutI CAGTG 1 cut(s) 462
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 167
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 546, 806, 820
ClaI ATCGAT 1 cut(s) 74
Csp6I GTAC 5 cut(s) 7, 518, 613, 858, 932
CviAII CATG 2 cut(s) 59, 849
CviQI GTAC 5 cut(s) 7, 518, 613, 858, 932
DdeI CTNAG 4 cut(s) 401, 542, 771, 854
DpnI GATC 3 cut(s) 73, 561, 686
DpnII GATC 3 cut(s) 71, 559, 684
Eam1104I CTCTTC 5 cut(s) 62, 78, 276, 369, 925
EarI CTCTTC 5 cut(s) 62, 78, 276, 369, 925
Eco47I GGWCC 2 cut(s) 546, 820
Eco57I CTGAAG 4 cut(s) 176, 576, 710, 924
Eco81I CCTNAGG 2 cut(s) 542, 771
Eco88I CYCGRG 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 546
Esp3I CGTCTC 2 cut(s) 513, 536
FaeI CATG 2 cut(s) 62, 852
FaiI YATR 9 cut(s) 60, 200, 337, 631, 755, 791, 850, 893, 895
FalI AAGNNNNNCTT 4 cut(s) 75, 107, 461, 493
FaqI GGGAC 2 cut(s) 169, 532
FatI CATG 2 cut(s) 58, 848
Fnu4HI GCNGC 5 cut(s) 14, 17, 20, 23, 54
FokI GGATG 3 cut(s) 127, 723, 912
Fsp4HI GCNGC 5 cut(s) 14, 17, 20, 23, 54
FspBI CTAG 1 cut(s) 656
GlaI GCGC 1 cut(s) 515
GluI GCNGC 5 cut(s) 14, 17, 20, 23, 54
HaeIII GGCC 3 cut(s) 642, 808, 875
HhaI GCGC 1 cut(s) 516
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 2 cut(s) 62, 852
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HindIII AAGCTT 5 cut(s) 167, 299, 470, 722, 731
HinfI GANTC 3 cut(s) 206, 568, 701
HphI GGTGA 2 cut(s) 487, 899
Hpy166II GTNNAC 2 cut(s) 250, 460
Hpy188I TCNGA 3 cut(s) 195, 729, 887
Hpy188III TCNNGA 8 cut(s) 59, 122, 445, 554, 563, 718, 770, 826
Hpy8I GTNNAC 2 cut(s) 250, 460
Hpy99I CGWCG 1 cut(s) 917
HpyAV CCTTC 6 cut(s) 140, 150, 338, 560, 737, 944
HpyCH4IV ACGT 5 cut(s) 231, 246, 506, 669, 796
HpyCH4V TGCA 4 cut(s) 165, 250, 320, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 22, 247, 730
HpyF3I CTNAG 4 cut(s) 401, 542, 771, 854
HpySE526I ACGT 5 cut(s) 231, 246, 506, 669, 796
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 2 cut(s) 62, 852
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 71, 559, 684
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 494
Lsp1109I GCAGC 5 cut(s) 25, 28, 31, 34, 40
LweI GCATC 3 cut(s) 115, 514, 701
MaeI CTAG 1 cut(s) 656
MaeII ACGT 5 cut(s) 231, 246, 506, 669, 796
MalI GATC 3 cut(s) 73, 561, 686
MbiI CCGCTC 1 cut(s) 863
MboI GATC 3 cut(s) 71, 559, 684
MboII GAAGA 8 cut(s) 79, 92, 95, 182, 263, 386, 569, 912
MfeI CAATTG 2 cut(s) 282, 866
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 8 cut(s) 27, 96, 148, 282, 358, 604, 662, 866
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 1 cut(s) 489
MseI TTAA 3 cut(s) 147, 212, 303
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 302
MunI CAATTG 2 cut(s) 282, 866
Mva1269I GAATGC 1 cut(s) 388
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 4 cut(s) 19, 22, 247, 730
NdeII GATC 3 cut(s) 71, 559, 684
NlaIII CATG 2 cut(s) 62, 852
NlaIV GGNNCC 2 cut(s) 548, 807
PaeR7I CTCGAG 1 cut(s) 824
PagI TCATGA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 2 cut(s) 206, 568
PkrI GCNGC 5 cut(s) 15, 18, 21, 24, 55
PleI GAGTC 1 cut(s) 695
PpsI GAGTC 1 cut(s) 695
PpuMI RGGWCCY 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 548, 807
PspPI GGNCC 3 cut(s) 546, 806, 820
PspPPI RGGWCCY 1 cut(s) 546
PsrI GAACNNNNNNTAC 2 cut(s) 781, 813
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 5 cut(s) 8, 519, 614, 859, 933
RsaNI GTAC 5 cut(s) 7, 518, 613, 858, 932
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 147, 212, 303
SatI GCNGC 5 cut(s) 14, 17, 20, 23, 54
Sau3AI GATC 3 cut(s) 71, 559, 684
Sau96I GGNCC 3 cut(s) 546, 806, 820
SchI GAGTC 1 cut(s) 695
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 3 cut(s) 115, 514, 701
Sfr274I CTCGAG 1 cut(s) 824
SinI GGWCC 2 cut(s) 546, 820
SlaI CTCGAG 1 cut(s) 824
SmlI CTYRAG 5 cut(s) 302, 443, 563, 716, 824
SmoI CTYRAG 5 cut(s) 302, 443, 563, 716, 824
Sse9I AATT 8 cut(s) 27, 96, 148, 282, 358, 604, 662, 866
SsiI CCGC 2 cut(s) 818, 861
SspMI CTAG 1 cut(s) 656
TaiI ACGT 5 cut(s) 234, 249, 509, 672, 799
TaqI TCGA 4 cut(s) 74, 522, 618, 825
TasI AATT 8 cut(s) 27, 96, 148, 282, 358, 604, 662, 866
TfiI GAWTC 2 cut(s) 206, 568
Tru1I TTAA 3 cut(s) 147, 212, 303
Tru9I TTAA 3 cut(s) 147, 212, 303
TscAI CASTG 1 cut(s) 462
TseI GCWGC 5 cut(s) 13, 16, 19, 22, 53
TspDTI ATGAA 2 cut(s) 324, 834
TspRI CASTG 1 cut(s) 462
Vha464I CTTAAG 1 cut(s) 302
VneI GTGCAC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 546, 820
XapI RAATTY 1 cut(s) 604
XhoI CTCGAG 1 cut(s) 824
XspI CTAG 1 cut(s) 656
ZraI GACGTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.