Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014287

Physical Location & Seq

Genomic Coordinates Reverse (-)

8470244 .. 8471644

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATAAGCCAAGCTTCGTAATCCAATCCAAAGAAGCAGAATCCGCCGCGAAACAACTCGGCGTTTCCGTCATTCAGCTCCTCCCGTCGCTAGTCAAACCAGCACAATCCTACGCTCGAACTCCGATTTCGAAATTCAACGTCGCAGTCGTCGGACTCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCCACCACTCAATCCACGCCGAACAGTTCCTCGTCACCAATCTCACACTCAACGGTGAACGTCATCTCAATTTCTTCGCCGTCTCCGCCGCACCATGTGGCCATTGCCGTCAATTCCTCCAAGAAATTCGCGACGCACCTGAAATCAAAATCCTTATCACCGATCCAAACAACTCCGCCGATTCCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTGCCACACAGATTCGGTCCCGACGATCTTCTCGGGAAAGATCATCCTCTTCTTCTCGAATCTCACGATAACCATCTCAAAATCTCAGATCTGGATTCGATTTGTAACGGAAACACCGATTCATCCGCCGATTTGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCATCGGGAGTTTCGCTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTATATGGAATCGGCGGCGTATAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTATGTGGCTAATGGTGGTGGAGGAGGATACGAGAGGATCGTCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGGTGGTGAGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAATTCAAAGTGTTTCATTGCTATGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

301

Amino Acids

32.58

Weight (kDa)

5.52

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	29 - 115	1.6e-13	Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2	PF08211	145 - 281	1.4e-51	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19570
fragaria_vesca	FvH4_1g07230
malus_domestica	MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica	Prupe.7G211600_v2.0.a1
pyrus_communis	pycom02g06120 pycom15g18230
rosa_chinensis	RchiOBHm_Chr2g0093131
rosa_laevigata	RLG00000016371
rosa_multiflora	Rmu_sc0003724.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148480
rosa_rugosa	Rorug02G0033200
rosa_samantha	Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana	Rw2G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	791
AccII	CGCG	3 cut(s)	50, 345, 617
AclWI	GGATC	4 cut(s)	169, 182, 371, 788
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	4 cut(s)	134, 197, 339, 875
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	3 cut(s)	614, 674, 726
AfiI	CCNNNNNNNGG	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	139, 580, 880
AluBI	AGCT	4 cut(s)	15, 79, 441, 902
AluI	AGCT	4 cut(s)	15, 79, 441, 902
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	3 cut(s)	301, 437, 848
AlwI	GGATC	4 cut(s)	169, 182, 371, 788
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	313
ApoI	RAATTY	4 cut(s)	134, 197, 339, 875
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	2 cut(s)	461, 719
AsuHPI	GGTGA	4 cut(s)	241, 281, 364, 832
AsuII	TTCGAA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	461, 719
BalI	TGGCCA	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	834
BccI	CCATC	2 cut(s)	525, 643
BceAI	ACGGC	5 cut(s)	278, 306, 603, 604, 852
BciVI	GTATCC	1 cut(s)	764
BcoDI	GTCTC	3 cut(s)	301, 437, 848
BfaI	CTAG	2 cut(s)	92, 711
BfuI	GTATCC	1 cut(s)	764
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	7 cut(s)	48, 303, 408, 597, 600, 699, 732
BlsI	GCNGC	7 cut(s)	49, 304, 409, 598, 601, 700, 733
Bme18I	GGWCC	2 cut(s)	461, 719
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	461, 719
BmiI	GGNNCC	2 cut(s)	463, 720
BmsI	GCATC	1 cut(s)	802
Bpu14I	TTCGAA	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse1I	ACTGG	1 cut(s)	722
Bse3DI	GCAATG	2 cut(s)	316, 889
Bse8I	GATNNNNATC	1 cut(s)	516
BseGI	GGATG	2 cut(s)	487, 566
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseMI	GCAATG	2 cut(s)	316, 889
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	2 cut(s)	71, 780
Bsh1236I	CGCG	3 cut(s)	50, 345, 617
BshFI	GGCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	834
BsiHKCI	CYCGRG	1 cut(s)	476
BsiWI	CGTACG	1 cut(s)	612
BslFI	GGGAC	2 cut(s)	447, 732
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	3 cut(s)	301, 437, 848
BsmBI	CGTCTC	2 cut(s)	301, 437
BsmFI	GGGAC	2 cut(s)	447, 732
BsnI	GGCC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
Bsp68I	TCGCGA	1 cut(s)	345
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	542
BspFNI	CGCG	3 cut(s)	50, 345, 617
BspLI	GGNNCC	2 cut(s)	463, 720
BspPI	GGATC	4 cut(s)	169, 182, 371, 788
BspT104I	TTCGAA	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	791
BsrDI	GCAATG	2 cut(s)	316, 889
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	722
BssMI	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	240, 269
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	672
BstBI	TTCGAA	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	181, 529, 903
BstF5I	GGATG	2 cut(s)	487, 566
BstFNI	CGCG	3 cut(s)	50, 345, 617
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	8 cut(s)	164, 177, 379, 472, 487, 535, 611, 783
BstMAI	GTCTC	3 cut(s)	301, 437, 848
BstMBI	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 299, 596
BstUI	CGCG	3 cut(s)	50, 345, 617
BstX2I	RGATCY	2 cut(s)	174, 532
BstYI	RGATCY	2 cut(s)	174, 532
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	487, 566
BtuMI	TCGCGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	619
Cfr13I	GGNCC	2 cut(s)	461, 719
CseI	GACGC	2 cut(s)	175, 356
Csp6I	GTAC	3 cut(s)	613, 673, 725
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	8 cut(s)	10, 15, 79, 315, 441, 590, 752, 902
CviKI_1	RGCY	8 cut(s)	10, 15, 79, 315, 441, 590, 752, 902
CviQI	GTAC	3 cut(s)	613, 673, 725
DdeI	CTNAG	3 cut(s)	181, 529, 903
DpnI	GATC	8 cut(s)	163, 176, 378, 471, 486, 534, 610, 782
DpnII	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	5 cut(s)	34, 289, 379, 394, 559
Eco47I	GGWCC	2 cut(s)	461, 719
Eco88I	CYCGRG	1 cut(s)	476
EcoRI	GAATTC	2 cut(s)	197, 875
Esp3I	CGTCTC	2 cut(s)	301, 437
FaeI	CATG	1 cut(s)	312
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	447, 732
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	7 cut(s)	48, 303, 408, 597, 600, 699, 732
FokI	GGATG	2 cut(s)	474, 553
Fsp4HI	GCNGC	7 cut(s)	48, 303, 408, 597, 600, 699, 732
FspBI	CTAG	2 cut(s)	92, 711
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	7 cut(s)	48, 303, 408, 597, 600, 699, 732
HaeIII	GGCC	1 cut(s)	315
HgaI	GACGC	2 cut(s)	175, 356
HhaI	GCGC	1 cut(s)	619
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HindIII	AAGCTT	3 cut(s)	13, 439, 900
HphI	GGTGA	4 cut(s)	241, 281, 364, 832
Hpy166II	GTNNAC	2 cut(s)	272, 673
Hpy188I	TCNGA	9 cut(s)	126, 155, 161, 174, 400, 418, 437, 532, 788
Hpy188III	TCNNGA	7 cut(s)	344, 464, 478, 500, 509, 536, 639
Hpy8I	GTNNAC	2 cut(s)	272, 673
Hpy99I	CGWCG	6 cut(s)	91, 146, 155, 350, 470, 788
HpyCH4III	ACNGT	2 cut(s)	240, 269
HpyCH4IV	ACGT	3 cut(s)	141, 274, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 299, 596
HpyF3I	CTNAG	3 cut(s)	181, 529, 903
HpySE526I	ACGT	3 cut(s)	141, 274, 430
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	1 cut(s)	617
Kzo9I	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
LmnI	GCTCC	2 cut(s)	84, 788
LpnPI	CCDG	8 cut(s)	114, 153, 366, 521, 635, 713, 735, 782
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	2 cut(s)	92, 711
MaeII	ACGT	3 cut(s)	141, 274, 430
MaeIII	GTNAC	3 cut(s)	247, 548, 659
MalI	GATC	8 cut(s)	163, 176, 378, 471, 486, 534, 610, 782
MbiI	CCGCTC	1 cut(s)	791
MboI	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
MboII	GAAGA	6 cut(s)	169, 280, 464, 485, 488, 821
MflI	RGATCY	2 cut(s)	174, 532
MhlI	GDGCHC	1 cut(s)	834
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	6 cut(s)	134, 197, 283, 326, 339, 875
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	3 cut(s)	133, 152, 766
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	315
MvnI	CGCG	3 cut(s)	50, 345, 617
MwoI	GCNNNNNNNGC	3 cut(s)	44, 299, 596
NdeII	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	2 cut(s)	463, 720
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	247, 659
NruI	TCGCGA	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	7 cut(s)	66, 147, 465, 507, 558, 617, 780
Pfl23II	CGTACG	1 cut(s)	612
PkrI	GCNGC	7 cut(s)	49, 304, 409, 598, 601, 700, 733
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PspLI	CGTACG	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	463, 720
PspPI	GGNCC	2 cut(s)	461, 719
PsuI	RGATCY	2 cut(s)	174, 532
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	3 cut(s)	614, 674, 726
RsaNI	GTAC	3 cut(s)	613, 673, 725
RseI	CAYNNNNRTG	1 cut(s)	894
SatI	GCNGC	7 cut(s)	48, 303, 408, 597, 600, 699, 732
Sau3AI	GATC	8 cut(s)	161, 174, 376, 469, 484, 532, 608, 780
Sau96I	GGNCC	2 cut(s)	461, 719
SchI	GAGTC	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	802
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	2 cut(s)	461, 719
SmiMI	CAYNNNNRTG	1 cut(s)	894
Sse9I	AATT	6 cut(s)	134, 197, 283, 326, 339, 875
SspMI	CTAG	2 cut(s)	92, 711
TaaI	ACNGT	2 cut(s)	240, 269
TaiI	ACGT	3 cut(s)	144, 277, 433
TaqI	TCGA	5 cut(s)	118, 131, 195, 501, 542
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	6 cut(s)	134, 197, 283, 326, 339, 875
TatI	WGTACW	2 cut(s)	672, 724
TauI	GCSGC	7 cut(s)	50, 305, 410, 599, 602, 701, 734
TseFI	GTSAC	2 cut(s)	247, 659
Tsp45I	GTSAC	2 cut(s)	247, 659
TspDTI	ATGAA	2 cut(s)	555, 878
TspGWI	ACGGA	3 cut(s)	58, 435, 567
VpaK11BI	GGWCC	2 cut(s)	461, 719
XapI	RAATTY	4 cut(s)	134, 197, 339, 875
XspI	CTAG	2 cut(s)	92, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.