Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014287

Physical Location & Seq

Genomic Coordinates Forward (+)

5960594 .. 5961493

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGACCGACCCAGATTCGTAATCGAAGCCTCGGAGGCGGAGTCAACGGCCAAGCAGTCCGGCCTCACCGTCGTCCAGCTCCTCCCGTCCTTCGTCGAGTCCGCCAAGGCCCTCGCCCAGGTCCCCATCTCCAAATTCCCCGTCGGAGCCGTCGGGTACGGGTCCTCGGGTCGGGTCTTCTACGGGGTCAACCTCGAGTTCCCGGGCCTCCCCCTCCACTACTCCGTCCACGCCGAGCAGTTCCTCGTCACCAATCTCTCGATCCAGTCGGAGCCCCGCCTGGAATACGTCGCCGTCTCCGCCGCCCCGTGCGGCCATTGCCGCCAATTCTTCCAGGAAATCCGCCGCGCCCAGGACATCAAGATCCTCATCACCTCCGCGGAGGCCGGGGACGACAAAGACGACACGTCGTGCGGCCAATTCAGCCCCCTCCGCCACCTCCTCCCCCACCGGTTCGGCCCCGAAGACCTCCTCGACGAGGACGTGCCTTTAGTCCTCGAGAAACACAACAATGGCCTATCTTTTAGCAACAGACCCGAGACTTTTAGCGACAAATCGCCAACTTTTAGCCACGATTTGATGAACCACGCGCTCGAGGCGGGGAATAGGTCCCACGCGCCGTACAGCCTTTGCCCGTCTGGGGTGGCGATTCTGGACGGCAAGGGGAAGATTTACAAAGGGTGGTACATGGAATCGGCGGCGTATAATCCGAGCATGGGTCCGGTCCAGGCGGCTCTGGTGGATTACATTGTCAGCGGCGGCGGCGGCGGGTATGAGGAAATAGTGGCGGCGGTTCTGGTGGAAAAGGAGGGTGCTTTGGTGAAGCAGGAGCAGGCTGCTAGGTTGCTGTTGCAGACCATTTCTCCAAAGGTCGAATTTCGGGTTTTGCATTGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

300

Amino Acids

32.57

Weight (kDa)

5.7

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	33 - 115	2.8e-12	Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2	PF08211	144 - 281	1.7e-47	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19570
fragaria_vesca	FvH4_1g07230
malus_domestica	MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica	Prupe.7G211600_v2.0.a1
pyrus_communis	pycom02g06120 pycom15g18230
rosa_chinensis	RchiOBHm_Chr2g0093131
rosa_laevigata	RLG00000016371
rosa_multiflora	Rmu_sc0003724.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148480
rosa_rugosa	Rorug02G0033200
rosa_samantha	Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana	Rw2G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	348, 380, 590, 617
AclWI	GGATC	2 cut(s)	256, 358
AcoI	YGGCCR	3 cut(s)	48, 313, 415
AcsI	RAATTY	2 cut(s)	134, 875
AdeI	CACNNNGTG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	158, 623, 686
AfiI	CCNNNNNNNGG	6 cut(s)	118, 171, 352, 478, 640, 716
AflIII	ACRYGT	1 cut(s)	405
AgeI	ACCGGT	1 cut(s)	450
AhdI	GACNNNNNGTC	1 cut(s)	406
AjiI	CACGTC	2 cut(s)	408, 484
AjnI	CCWGG	5 cut(s)	117, 279, 333, 351, 726
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	301, 533
AlwI	GGATC	2 cut(s)	256, 358
Ama87I	CYCGRG	6 cut(s)	166, 194, 202, 497, 536, 593
AoxI	GGCC	9 cut(s)	48, 61, 108, 205, 313, 384, 415, 457, 514
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	2 cut(s)	134, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AsiGI	ACCGGT	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	350, 592, 619
AspS9I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 458, 609, 719, 724
AsuC2I	CCSGG	3 cut(s)	203, 204, 388
AsuHPI	GGTGA	4 cut(s)	58, 241, 364, 832
AvaI	CYCGRG	6 cut(s)	166, 194, 202, 497, 536, 593
AvaII	GGWCC	6 cut(s)	4, 121, 162, 609, 719, 724
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	169, 471
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	5 cut(s)	63, 134, 278, 604, 673
BciT130I	CCWGG	5 cut(s)	119, 281, 335, 353, 728
BcnI	CCSGG	3 cut(s)	203, 204, 388
BcoDI	GTCTC	2 cut(s)	301, 533
BfaI	CTAG	1 cut(s)	840
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	8 cut(s)	119, 203, 204, 281, 335, 353, 388, 728
Bme18I	GGWCC	6 cut(s)	4, 121, 162, 609, 719, 724
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmeT110I	CYCGRG	6 cut(s)	166, 194, 202, 497, 536, 593
BmgBI	CACGTC	2 cut(s)	408, 484
BmgT120I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 458, 609, 719, 724
BmiI	GGNNCC	7 cut(s)	123, 148, 163, 273, 460, 611, 720
BmrFI	CCNGG	8 cut(s)	119, 203, 204, 281, 335, 353, 388, 728
BpiI	GAAGAC	2 cut(s)	169, 471
BpuMI	CCSGG	3 cut(s)	203, 204, 388
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	8 cut(s)	30, 105, 117, 165, 202, 351, 378, 387
BsaWI	WCCGGW	2 cut(s)	450, 721
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 847, 877
Bsc4I	CCNNNNNNNGG	6 cut(s)	118, 171, 352, 478, 640, 716
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	316, 889
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	5 cut(s)	119, 281, 335, 353, 728
BseDI	CCNNGG	8 cut(s)	30, 105, 117, 165, 202, 351, 378, 387
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	6 cut(s)	118, 171, 352, 478, 640, 716
BseMI	GCAATG	2 cut(s)	316, 889
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	3 cut(s)	71, 431, 461
BseXI	GCAGC	1 cut(s)	823
Bsh1236I	CGCG	4 cut(s)	348, 380, 590, 617
BshFI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 417, 459, 516
BshTI	ACCGGT	1 cut(s)	450
BsiHKCI	CYCGRG	6 cut(s)	166, 194, 202, 497, 536, 593
BsiSI	CCGG	5 cut(s)	60, 203, 387, 451, 722
BslFI	GGGAC	3 cut(s)	107, 404, 595
BslI	CCNNNNNNNGG	6 cut(s)	118, 171, 352, 478, 640, 716
BsmAI	GTCTC	2 cut(s)	301, 533
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	3 cut(s)	107, 404, 595
BsnI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 417, 459, 516
BsoBI	CYCGRG	6 cut(s)	166, 194, 202, 497, 536, 593
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	261, 363
BspANI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 417, 459, 516
BspFNI	CGCG	4 cut(s)	348, 380, 590, 617
BspLI	GGNNCC	7 cut(s)	123, 148, 163, 273, 460, 611, 720
BspPI	GGATC	2 cut(s)	256, 358
BsrDI	GCAATG	2 cut(s)	316, 889
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	8 cut(s)	30, 105, 117, 165, 202, 351, 378, 387
BssMI	GATC	2 cut(s)	261, 363
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	5 cut(s)	119, 281, 335, 353, 728
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	834
BstDSI	CCRYGG	1 cut(s)	378
BstENI	CCTNNNNNAGG	2 cut(s)	116, 476
BstFNI	CGCG	4 cut(s)	348, 380, 590, 617
BstHHI	GCGC	3 cut(s)	350, 592, 619
BstKTI	GATC	2 cut(s)	264, 366
BstMAI	GTCTC	2 cut(s)	301, 533
BstMBI	GATC	2 cut(s)	261, 363
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 299, 318, 321, 423, 432, 596, 762, 765
BstNI	CCWGG	5 cut(s)	119, 281, 335, 353, 728
BstSCI	CCNGG	8 cut(s)	117, 201, 202, 279, 333, 351, 386, 726
BstUI	CGCG	4 cut(s)	348, 380, 590, 617
BstV1I	GCAGC	1 cut(s)	823
BstV2I	GAAGAC	2 cut(s)	169, 471
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 417, 459, 516
BtgI	CCRYGG	1 cut(s)	378
BtrI	CACGTC	2 cut(s)	408, 484
Cac8I	GCNNGC	1 cut(s)	834
CfoI	GCGC	3 cut(s)	350, 592, 619
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 458, 609, 719, 724
Cfr42I	CCGCGG	1 cut(s)	381
Cfr9I	CCCGGG	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	157, 622, 685
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	2 cut(s)	688, 715
CviQI	GTAC	3 cut(s)	157, 622, 685
DpnI	GATC	2 cut(s)	263, 365
DpnII	GATC	2 cut(s)	261, 363
DraIII	CACNNNGTG	1 cut(s)	411
DriI	GACNNNNNGTC	1 cut(s)	406
EaeI	YGGCCR	3 cut(s)	48, 313, 415
Eam1105I	GACNNNNNGTC	1 cut(s)	406
EciI	GGCGGA	5 cut(s)	53, 91, 289, 332, 422
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	6 cut(s)	4, 121, 162, 609, 719, 724
Eco88I	CYCGRG	6 cut(s)	166, 194, 202, 497, 536, 593
EcoNI	CCTNNNNNAGG	2 cut(s)	116, 476
EcoO109I	RGGNCCY	4 cut(s)	109, 121, 162, 609
EcoRII	CCWGG	5 cut(s)	117, 279, 333, 351, 726
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	2 cut(s)	691, 718
FaiI	YATR	4 cut(s)	689, 705, 716, 774
FaqI	GGGAC	3 cut(s)	107, 404, 595
FatI	CATG	2 cut(s)	687, 714
FauI	CCCGC	3 cut(s)	284, 592, 761
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	3 cut(s)	349, 591, 618
HaeIII	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 417, 459, 516
HapII	CCGG	5 cut(s)	60, 203, 387, 451, 722
HhaI	GCGC	3 cut(s)	350, 592, 619
Hin1II	CATG	2 cut(s)	691, 718
Hin6I	GCGC	3 cut(s)	348, 590, 617
HinP1I	GCGC	3 cut(s)	348, 590, 617
HincII	GTYRAC	2 cut(s)	45, 190
HindII	GTYRAC	2 cut(s)	45, 190
HinfI	GANTC	5 cut(s)	15, 41, 98, 649, 692
HpaII	CCGG	5 cut(s)	60, 203, 387, 451, 722
HphI	GGTGA	4 cut(s)	58, 241, 364, 832
Hpy166II	GTNNAC	3 cut(s)	45, 190, 229
Hpy188I	TCNGA	4 cut(s)	34, 146, 271, 711
Hpy188III	TCNNGA	4 cut(s)	259, 361, 499, 653
Hpy8I	GTNNAC	3 cut(s)	45, 190, 229
Hpy99I	CGWCG	7 cut(s)	74, 98, 146, 155, 293, 412, 479
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	3 cut(s)	288, 407, 483
HpyCH4V	TGCA	3 cut(s)	853, 889, 894
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 299, 318, 321, 423, 432, 596, 762, 765
HpySE526I	ACGT	3 cut(s)	288, 407, 483
Hsp92II	CATG	2 cut(s)	691, 718
HspAI	GCGC	3 cut(s)	348, 590, 617
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	261, 363
LmnI	GCTCC	4 cut(s)	84, 146, 271, 829
Lsp1109I	GCAGC	1 cut(s)	823
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	3 cut(s)	288, 407, 483
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	263, 365
MboI	GATC	2 cut(s)	261, 363
MboII	GAAGA	4 cut(s)	169, 322, 476, 679
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	134, 326, 419, 875
MlyI	GAGTC	2 cut(s)	50, 107
MmeI	TCCRAC	2 cut(s)	124, 249
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	2 cut(s)	380, 756
MspI	CCGG	5 cut(s)	60, 203, 387, 451, 722
MspR9I	CCNGG	8 cut(s)	119, 203, 204, 281, 335, 353, 388, 728
MvaI	CCWGG	5 cut(s)	119, 281, 335, 353, 728
MvnI	CGCG	4 cut(s)	348, 380, 590, 617
MwoI	GCNNNNNNNGC	9 cut(s)	35, 299, 318, 321, 423, 432, 596, 762, 765
NciI	CCSGG	3 cut(s)	203, 204, 388
NdeII	GATC	2 cut(s)	261, 363
NlaIII	CATG	2 cut(s)	691, 718
NlaIV	GGNNCC	7 cut(s)	123, 148, 163, 273, 460, 611, 720
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	3 cut(s)	194, 497, 593
PcsI	WCGNNNNNNNCGW	2 cut(s)	399, 480
PfeI	GAWTC	3 cut(s)	15, 649, 692
PfoI	TCCNGGA	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	450
PleI	GAGTC	2 cut(s)	49, 106
PpsI	GAGTC	2 cut(s)	49, 106
PpuMI	RGGWCCY	3 cut(s)	121, 162, 609
Psp5II	RGGWCCY	3 cut(s)	121, 162, 609
Psp6I	CCWGG	5 cut(s)	117, 279, 333, 351, 726
PspGI	CCWGG	5 cut(s)	117, 279, 333, 351, 726
PspN4I	GGNNCC	7 cut(s)	123, 148, 163, 273, 460, 611, 720
PspPI	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 458, 609, 719, 724
PspPPI	RGGWCCY	3 cut(s)	121, 162, 609
PspXI	VCTCGAGB	2 cut(s)	194, 593
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	3 cut(s)	158, 623, 686
RsaNI	GTAC	3 cut(s)	157, 622, 685
RseI	CAYNNNNRTG	1 cut(s)	510
SacII	CCGCGG	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	261, 363
Sau96I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 458, 609, 719, 724
SchI	GAGTC	2 cut(s)	50, 107
ScrFI	CCNGG	8 cut(s)	119, 203, 204, 281, 335, 353, 388, 728
SduI	GDGCHC	1 cut(s)	276
Sfr274I	CTCGAG	3 cut(s)	194, 497, 593
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SinI	GGWCC	6 cut(s)	4, 121, 162, 609, 719, 724
SlaI	CTCGAG	3 cut(s)	194, 497, 593
SmaI	CCCGGG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	3 cut(s)	194, 497, 593
SmoI	CTYRAG	3 cut(s)	194, 497, 593
Sse9I	AATT	4 cut(s)	134, 326, 419, 875
SspMI	CTAG	1 cut(s)	840
StyD4I	CCNGG	8 cut(s)	117, 201, 202, 279, 333, 351, 386, 726
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	3 cut(s)	291, 410, 486
TaqI	TCGA	8 cut(s)	24, 96, 195, 260, 474, 498, 594, 873
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	134, 326, 419, 875
TfiI	GAWTC	3 cut(s)	15, 649, 692
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	596
TspGWI	ACGGA	1 cut(s)	214
TspMI	CCCGGG	1 cut(s)	202
VpaK11BI	GGWCC	6 cut(s)	4, 121, 162, 609, 719, 724
XagI	CCTNNNNNAGG	2 cut(s)	116, 476
XapI	RAATTY	2 cut(s)	134, 875
XhoI	CTCGAG	3 cut(s)	194, 497, 593
XmaI	CCCGGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.