Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014287

Physical Location & Seq

Genomic Coordinates Forward (+)

6092665 .. 6093531

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGACCGACCCAGATTCGTAATCGAAGCCTCGGAGGCGGAGTCAGCGGCCAAGCAGAAGGGCCTCACCGTCGTCCAGCACCTCCCGTCCCTCGTCGAGTCCGCCAAGGACCTCGCCCGGGTCCCCATCTCCAAATTCCCCGTCGGAGCCGTCGGGTACGGGTCCTCGGGTCGGGTCTTCTTCGGGGTCAACCTCGAGTTCCCGGGCCTCCCCCTCCACTACTCGGTCCACGCCGAGCAGTTCCTCGTCACCAATCTCTCGATCCAGTCGGAGCCCCGCCTCGAATACGTCGCCGTCTCCGCCGCCCCCTGCGGCCATTGCCGCCAATTCTTTCAGGAAATCCGCCGCGCACAGGACATCAAGATCCTCATCACCTCCGGAGACGACAGAGACGACACGTCGTGCGGCCAATTCAGCCCCCTCCGCCACCTCCTCCCCCACCGGTTCGGCCCCGAAGACCTCCTCGACGAGGACGTGCCTTTAGTTCTCGAGAAGCACAACAATGGCCTATCTTTTAGCAACAAACCCGAGACTTTTAGCGACGATTTGATAAACCACGCGCTGGAGGCGGCGAATAGGTCCCACGCGCCTTACAGCCTGTGCCCGTCTGGGGTGGCGATTCTGGACGGTGAGGGGAAGATTTACAAAGGGTGGTATATGGAATCGGCGGCGTATAATCCGAGCATGGGTCCTGTCCAGGCGGCTCTGGTGGATTACATTGTCGGCGGCGGCGGCGGGTATGAGGAAATAGTGGCGGCGGTTCTGGTGGAAAAGGAGGGTGCTTTGGTGAAGCAGGAGCAGGCTGCTAGGTTGCTGTTGCAGACCATTTCTCCCGAGGTCGAATTTCGGGTTTTGCATTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

288

Amino Acids

31.48

Weight (kDa)

5.38

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	31 - 115	5.7e-12	Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2	PF08211	141 - 270	1e-48	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19570
fragaria_vesca	FvH4_1g07230
malus_domestica	MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica	Prupe.7G211600_v2.0.a1
pyrus_communis	pycom02g06120 pycom15g18230
rosa_chinensis	RchiOBHm_Chr2g0093131
rosa_laevigata	RLG00000016371
rosa_multiflora	Rmu_sc0003724.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148480
rosa_rugosa	Rorug02G0033200
rosa_samantha	Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana	Rw2G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccII	CGCG	3 cut(s)	348, 560, 587
AccIII	TCCGGA	1 cut(s)	377
AclWI	GGATC	2 cut(s)	256, 358
AcoI	YGGCCR	3 cut(s)	48, 313, 406
AcsI	RAATTY	2 cut(s)	134, 842
AdeI	CACNNNGTG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 562, 610, 686
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	441
AhdI	GACNNNNNGTC	1 cut(s)	397
AjiI	CACGTC	2 cut(s)	399, 475
AjnI	CCWGG	1 cut(s)	696
Alw26I	GTCTC	4 cut(s)	301, 375, 384, 524
AlwI	GGATC	2 cut(s)	256, 358
Ama87I	CYCGRG	7 cut(s)	117, 166, 194, 202, 488, 527, 833
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	7 cut(s)	48, 61, 205, 313, 406, 448, 505
ApeKI	GCWGC	1 cut(s)	803
ApoI	RAATTY	2 cut(s)	134, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AsiGI	ACCGGT	1 cut(s)	441
AspLEI	GCGC	3 cut(s)	350, 562, 589
AsuC2I	CCSGG	4 cut(s)	118, 119, 203, 204
AsuHPI	GGTGA	5 cut(s)	58, 241, 364, 641, 799
AvaI	CYCGRG	7 cut(s)	117, 166, 194, 202, 488, 527, 833
AvaII	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 579, 689
BaeGI	GKGCMC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	169, 462
BbvI	GCAGC	1 cut(s)	790
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	134, 278
BciT130I	CCWGG	1 cut(s)	698
BcnI	CCSGG	4 cut(s)	118, 119, 203, 204
BcoDI	GTCTC	4 cut(s)	301, 375, 384, 524
BfaI	CTAG	1 cut(s)	807
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	5 cut(s)	118, 119, 203, 204, 698
Bme18I	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 579, 689
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	7 cut(s)	117, 166, 194, 202, 488, 527, 833
BmgBI	CACGTC	2 cut(s)	399, 475
BmiI	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 581, 690
BmrFI	CCNGG	5 cut(s)	118, 119, 203, 204, 698
BpiI	GAAGAC	2 cut(s)	169, 462
BpmI	CTGGAG	1 cut(s)	584
BpuMI	CCSGG	4 cut(s)	118, 119, 203, 204
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	6 cut(s)	30, 105, 117, 165, 202, 834
BsaWI	WCCGGW	2 cut(s)	377, 441
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 814, 844
Bsc4I	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 562, 610, 686
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	316, 856
Bse8I	GATNNNNATC	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	6 cut(s)	30, 105, 117, 165, 202, 834
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 562, 610, 686
BseMI	GCAATG	2 cut(s)	316, 856
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	422, 452
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	790
Bsh1236I	CGCG	3 cut(s)	348, 560, 587
BshFI	GGCC	7 cut(s)	50, 63, 207, 315, 408, 450, 507
BshTI	ACCGGT	1 cut(s)	441
BsiHKCI	CYCGRG	7 cut(s)	117, 166, 194, 202, 488, 527, 833
BsiSI	CCGG	4 cut(s)	118, 203, 378, 442
BslFI	GGGAC	3 cut(s)	73, 107, 565
BslI	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 562, 610, 686
BsmAI	GTCTC	4 cut(s)	301, 375, 384, 524
BsmBI	CGTCTC	3 cut(s)	301, 375, 384
BsmFI	GGGAC	3 cut(s)	73, 107, 565
BsnI	GGCC	7 cut(s)	50, 63, 207, 315, 408, 450, 507
BsoBI	CYCGRG	7 cut(s)	117, 166, 194, 202, 488, 527, 833
Bsp1286I	GDGCHC	2 cut(s)	276, 605
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	2 cut(s)	261, 363
BspANI	GGCC	7 cut(s)	50, 63, 207, 315, 408, 450, 507
BspEI	TCCGGA	1 cut(s)	377
BspFNI	CGCG	3 cut(s)	348, 560, 587
BspLI	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 581, 690
BspPI	GGATC	2 cut(s)	256, 358
BsrDI	GCAATG	2 cut(s)	316, 856
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	6 cut(s)	30, 105, 117, 165, 202, 834
BssMI	GATC	2 cut(s)	261, 363
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	70, 629
BstC8I	GCNNGC	1 cut(s)	801
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstFNI	CGCG	3 cut(s)	348, 560, 587
BstHHI	GCGC	3 cut(s)	350, 562, 589
BstKTI	GATC	2 cut(s)	264, 366
BstMAI	GTCTC	4 cut(s)	301, 375, 384, 524
BstMBI	GATC	2 cut(s)	261, 363
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 44, 299, 318, 321, 414, 423, 566, 732
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	5 cut(s)	116, 117, 201, 202, 696
BstSLI	GKGCMC	1 cut(s)	605
BstUI	CGCG	3 cut(s)	348, 560, 587
BstV1I	GCAGC	1 cut(s)	790
BstV2I	GAAGAC	2 cut(s)	169, 462
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	7 cut(s)	50, 63, 207, 315, 408, 450, 507
BtrI	CACGTC	2 cut(s)	399, 475
Cac8I	GCNNGC	1 cut(s)	801
CfoI	GCGC	3 cut(s)	350, 562, 589
Cfr10I	RCCGGY	1 cut(s)	441
Cfr9I	CCCGGG	2 cut(s)	117, 202
Csp6I	GTAC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	1 cut(s)	685
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	263, 365
DpnII	GATC	2 cut(s)	261, 363
DraIII	CACNNNGTG	1 cut(s)	402
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	3 cut(s)	48, 313, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EciI	GGCGGA	5 cut(s)	53, 91, 289, 332, 413
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 579, 689
Eco88I	CYCGRG	7 cut(s)	117, 166, 194, 202, 488, 527, 833
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	6 cut(s)	61, 109, 121, 162, 579, 689
EcoRII	CCWGG	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	3 cut(s)	301, 375, 384
FaeI	CATG	1 cut(s)	688
FaiI	YATR	5 cut(s)	657, 659, 675, 686, 741
FaqI	GGGAC	3 cut(s)	73, 107, 565
FatI	CATG	1 cut(s)	684
FauI	CCCGC	2 cut(s)	284, 728
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	807
GlaI	GCGC	3 cut(s)	349, 561, 588
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	7 cut(s)	50, 63, 207, 315, 408, 450, 507
HapII	CCGG	4 cut(s)	118, 203, 378, 442
HhaI	GCGC	3 cut(s)	350, 562, 589
Hin1II	CATG	1 cut(s)	688
Hin6I	GCGC	3 cut(s)	348, 560, 587
HinP1I	GCGC	3 cut(s)	348, 560, 587
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	5 cut(s)	15, 41, 98, 619, 662
HpaII	CCGG	4 cut(s)	118, 203, 378, 442
HphI	GGTGA	5 cut(s)	58, 241, 364, 641, 799
Hpy166II	GTNNAC	2 cut(s)	190, 229
Hpy188I	TCNGA	4 cut(s)	34, 146, 271, 681
Hpy188III	TCNNGA	8 cut(s)	259, 335, 361, 378, 488, 490, 623, 833
Hpy8I	GTNNAC	2 cut(s)	190, 229
Hpy99I	CGWCG	8 cut(s)	74, 98, 146, 155, 293, 403, 470, 545
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	70, 629
HpyCH4IV	ACGT	3 cut(s)	288, 398, 474
HpyCH4V	TGCA	3 cut(s)	820, 856, 861
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 44, 299, 318, 321, 414, 423, 566, 732
HpySE526I	ACGT	3 cut(s)	288, 398, 474
Hsp92II	CATG	1 cut(s)	688
HspAI	GCGC	3 cut(s)	348, 560, 587
KflI	GGGWCCC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	261, 363
LmnI	GCTCC	3 cut(s)	146, 271, 796
Lsp1109I	GCAGC	1 cut(s)	790
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	3 cut(s)	288, 398, 474
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	263, 365
MboI	GATC	2 cut(s)	261, 363
MboII	GAAGA	4 cut(s)	169, 172, 467, 649
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	276, 605
MluCI	AATT	4 cut(s)	134, 326, 410, 842
MlyI	GAGTC	2 cut(s)	50, 107
MmeI	TCCRAC	2 cut(s)	124, 249
MroI	TCCGGA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	4 cut(s)	118, 203, 378, 442
MspR9I	CCNGG	5 cut(s)	118, 119, 203, 204, 698
MvaI	CCWGG	1 cut(s)	698
MvnI	CGCG	3 cut(s)	348, 560, 587
MwoI	GCNNNNNNNGC	9 cut(s)	35, 44, 299, 318, 321, 414, 423, 566, 732
NciI	CCSGG	4 cut(s)	118, 119, 203, 204
NdeII	GATC	2 cut(s)	261, 363
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 581, 690
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	2 cut(s)	194, 488
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 471
PfeI	GAWTC	3 cut(s)	15, 619, 662
PflMI	CCANNNNNTGG	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	441
PleI	GAGTC	2 cut(s)	49, 106
PpsI	GAGTC	2 cut(s)	49, 106
PpuMI	RGGWCCY	5 cut(s)	109, 121, 162, 579, 689
Psp5II	RGGWCCY	5 cut(s)	109, 121, 162, 579, 689
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 581, 690
PspPPI	RGGWCCY	5 cut(s)	109, 121, 162, 579, 689
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	501
Sau3AI	GATC	2 cut(s)	261, 363
SchI	GAGTC	2 cut(s)	50, 107
ScrFI	CCNGG	5 cut(s)	118, 119, 203, 204, 698
SduI	GDGCHC	2 cut(s)	276, 605
Sfr274I	CTCGAG	2 cut(s)	194, 488
SinI	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 579, 689
SlaI	CTCGAG	2 cut(s)	194, 488
SmaI	CCCGGG	2 cut(s)	119, 204
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	194, 488
SmoI	CTYRAG	2 cut(s)	194, 488
Sse9I	AATT	4 cut(s)	134, 326, 410, 842
SspMI	CTAG	1 cut(s)	807
StyD4I	CCNGG	5 cut(s)	116, 117, 201, 202, 696
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	70, 629
TaiI	ACGT	3 cut(s)	291, 401, 477
TaqI	TCGA	8 cut(s)	24, 96, 195, 260, 282, 465, 489, 840
TaqII	GACCGA	2 cut(s)	21, 214
TasI	AATT	4 cut(s)	134, 326, 410, 842
TfiI	GAWTC	3 cut(s)	15, 619, 662
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	1 cut(s)	247
TspMI	CCCGGG	2 cut(s)	117, 202
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 579, 689
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	2 cut(s)	134, 842
XhoI	CTCGAG	2 cut(s)	194, 488
XmaI	CCCGGG	2 cut(s)	117, 202
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.