Prupe.7G211600_v2.0.a1

Cytidine deaminase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
19328072 .. 19329382
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211600.1

Sequence Viewer

Length: 915 bp
ATGGACCGACCCAGATTCGTAATTGAAGCATCCGAGGCCGAATCAATGGCCAAGCGATCCAACCTCACCGTCCTCCAGCTCCTCCCCTCCTTAGTCAAACCCGCCCAGGCCCTCGCCCGCCCGCCCATCTCCAAATTCCACGTCGGAGCTATCGGATACGGGTCTTCGGGTCGGATCTTCTTCGGCGGCAACCTCGAGTTCCCGGGTCTCCCGCTCCACTACTCCGTCCACGCCGAGCAGTTCCTCGTCACCAACCTCTCAATCCACAACGAGTCCAAACTCGAATACGTCGCCGTTTCGGCGGCTCCGTGCGGCCATTGCCGTCAGTTCCTCCAAGAAATCCGCGGAGCCCCGGATATCAAGATTCTAATAACCTCGGCCGAGTCCGGAGACGACAATTCCGGGTTAAACCGGTTTGACCCGCTTCTCCATTTGCTCCCCCACCGGTTCGGACCCGAAGACCTTCTCGGAGGAGACGTGCCGTTGCTTTTAGAGCACCACCACAACGGGCTGTCATTTTTGGGCGAAACCGAGATTTTAACCAACGATTTTAAATTGAATGCGGAGTTAAAAGTCGCGGCTTTAGAGGCCGCGAACAAGTCTTATGCTCCGTACAGTGGGTGCCCATCTGGTGTGGCTATTTTGGACTGTGATGGGAATGTTTACAAAGGGTCGTACATGGAGTCCGCAGCTTATAATCCGAGCATGGGCCCGGTTCAATCGGCTCTGGTGGCTTACATTGTTGGTGGGGGTGCTGGGTATGAGAAAATTGTAGGTGCGGTTTTGGTGGAAAAAGATGGAGTTTTGGTTAAACAAGAGCACACAGCAAGGCTGCTCTTGCAGGCCATTTCCCCCAAGCTTGAGTTTCGGGTTTTTCACTGCGCTTCGGGTTCGAATGCCTGTAAAAAGTCTTGA

Protein Analysis

305

Amino Acids

32.66

Weight (kDa)

6.17

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19570
fragaria_vesca FvH4_1g07230
malus_domestica MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica Prupe.7G211600_v2.0.a1
pyrus_communis pycom02g06120 pycom15g18230
rosa_chinensis RchiOBHm_Chr2g0093131
rosa_laevigata RLG00000016371
rosa_multiflora Rmu_sc0003724.1_g000003
rosa_roxburghii Rroxscaffold_2G00148480
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana Rw2G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 621
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 3 cut(s) 345, 578, 593
AccIII TCCGGA 1 cut(s) 386
AclWI GGATC 2 cut(s) 51, 182
AcoI YGGCCR 3 cut(s) 48, 313, 378
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 614, 677
AfiI CCNNNNNNNGG 2 cut(s) 617, 707
AgeI ACCGGT 2 cut(s) 411, 444
AgsI TTSAA 3 cut(s) 26, 559, 719
AjiI CACGTC 2 cut(s) 142, 478
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 79, 149, 692, 859
AluI AGCT 4 cut(s) 79, 149, 692, 859
Alw21I GWGCWC 2 cut(s) 498, 822
Alw26I GTCTC 3 cut(s) 212, 384, 468
AlwI GGATC 2 cut(s) 51, 182
Ama87I CYCGRG 2 cut(s) 194, 202
Aor13HI TCCGGA 1 cut(s) 386
AoxI GGCC 8 cut(s) 36, 48, 108, 313, 378, 588, 709, 843
ApaI GGGCCC 1 cut(s) 713
ApeKI GCWGC 2 cut(s) 689, 832
ApoI RAATTY 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AsiGI ACCGGT 2 cut(s) 411, 444
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 5 cut(s) 4, 109, 452, 709, 710
AsuC2I CCSGG 5 cut(s) 203, 204, 353, 403, 713
AsuHPI GGTGA 2 cut(s) 58, 241
AsuII TTCGAA 1 cut(s) 893
AvaI CYCGRG 2 cut(s) 194, 202
AvaII GGWCC 2 cut(s) 4, 452
BaeGI GKGCMC 2 cut(s) 626, 713
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 621
BanII GRGCYC 2 cut(s) 352, 713
BbsI GAAGAC 2 cut(s) 156, 465
Bbv12I GWGCWC 2 cut(s) 498, 822
BbvI GCAGC 2 cut(s) 701, 819
BccI CCATC 4 cut(s) 134, 634, 647, 791
BceAI ACGGC 3 cut(s) 278, 306, 466
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 149
BcnI CCSGG 5 cut(s) 203, 204, 353, 403, 713
BcoDI GTCTC 3 cut(s) 212, 384, 468
BfuI GTATCC 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 7 cut(s) 187, 303, 313, 579, 591, 690, 833
BlsI GCNGC 7 cut(s) 188, 304, 314, 580, 592, 691, 834
Bme1390I CCNGG 6 cut(s) 107, 203, 204, 353, 403, 713
Bme18I GGWCC 2 cut(s) 4, 452
BmeT110I CYCGRG 2 cut(s) 194, 202
BmgBI CACGTC 2 cut(s) 142, 478
BmgT120I GGNCC 5 cut(s) 4, 109, 452, 709, 710
BmiI GGNNCC 5 cut(s) 306, 349, 454, 623, 711
BmrFI CCNGG 6 cut(s) 107, 203, 204, 353, 403, 713
BmsI GCATC 1 cut(s) 38
BpiI GAAGAC 2 cut(s) 156, 465
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 5 cut(s) 203, 204, 353, 403, 713
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 6 cut(s) 33, 105, 202, 343, 351, 375
BsaWI WCCGGW 3 cut(s) 386, 411, 444
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 792, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 707
Bse118I RCCGGY 2 cut(s) 411, 444
Bse3DI GCAATG 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 386
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 6 cut(s) 33, 105, 202, 343, 351, 375
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 617, 707
BseMI GCAATG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 71, 486
BseSI GKGCMC 2 cut(s) 626, 713
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 701, 819
BseYI CCCAGC 1 cut(s) 755
Bsh1236I CGCG 3 cut(s) 345, 578, 593
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 8 cut(s) 38, 50, 110, 315, 380, 590, 711, 845
BshNI GGYRCC 1 cut(s) 621
BshTI ACCGGT 2 cut(s) 411, 444
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 498, 822
BsiHKCI CYCGRG 2 cut(s) 194, 202
BsiSI CCGG 7 cut(s) 203, 353, 387, 402, 412, 445, 713
BslI CCNNNNNNNGG 2 cut(s) 617, 707
BsmAI GTCTC 3 cut(s) 212, 384, 468
BsmBI CGTCTC 2 cut(s) 384, 468
BsmI GAATGC 2 cut(s) 565, 901
BsnI GGCC 8 cut(s) 38, 50, 110, 315, 380, 590, 711, 845
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 2 cut(s) 194, 202
Bsp119I TTCGAA 1 cut(s) 893
Bsp120I GGGCCC 1 cut(s) 709
Bsp1286I GDGCHC 5 cut(s) 352, 498, 626, 713, 822
Bsp13I TCCGGA 1 cut(s) 386
Bsp143I GATC 2 cut(s) 56, 174
BspANI GGCC 8 cut(s) 38, 50, 110, 315, 380, 590, 711, 845
BspEI TCCGGA 1 cut(s) 386
BspFNI CGCG 3 cut(s) 345, 578, 593
BspLI GGNNCC 5 cut(s) 306, 349, 454, 623, 711
BspPI GGATC 2 cut(s) 51, 182
BspT104I TTCGAA 1 cut(s) 893
BspT107I GGYRCC 1 cut(s) 621
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 2 cut(s) 411, 444
BssAI RCCGGY 2 cut(s) 411, 444
BssECI CCNNGG 6 cut(s) 33, 105, 202, 343, 351, 375
BssMI GATC 2 cut(s) 56, 174
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 70, 617, 650
BstBI TTCGAA 1 cut(s) 893
BstC8I GCNNGC 3 cut(s) 118, 122, 843
BstDEI CTNAG 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 3 cut(s) 345, 578, 593
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 2 cut(s) 59, 177
BstMAI GTCTC 3 cut(s) 212, 384, 468
BstMBI GATC 2 cut(s) 56, 174
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 7 cut(s) 35, 299, 318, 493, 587, 731, 838
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 6 cut(s) 105, 201, 202, 351, 401, 711
BstSLI GKGCMC 2 cut(s) 626, 713
BstUI CGCG 3 cut(s) 345, 578, 593
BstV1I GCAGC 2 cut(s) 701, 819
BstV2I GAAGAC 2 cut(s) 156, 465
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BstZI CGGCCG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 8 cut(s) 38, 50, 110, 315, 380, 590, 711, 845
BtgI CCRYGG 1 cut(s) 343
BtrI CACGTC 2 cut(s) 142, 478
BtsCI GGATG 1 cut(s) 29
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 2 cut(s) 622, 877
Cac8I GCNNGC 3 cut(s) 118, 122, 843
CfoI GCGC 1 cut(s) 884
Cfr10I RCCGGY 2 cut(s) 411, 444
Cfr13I GGNCC 5 cut(s) 4, 109, 452, 709, 710
Cfr42I CCGCGG 1 cut(s) 346
Cfr9I CCCGGG 1 cut(s) 202
Csp6I GTAC 2 cut(s) 613, 676
CspAI ACCGGT 2 cut(s) 411, 444
CviAII CATG 2 cut(s) 679, 706
CviQI GTAC 2 cut(s) 613, 676
DdeI CTNAG 1 cut(s) 91
DpnI GATC 2 cut(s) 58, 176
DpnII GATC 2 cut(s) 56, 174
DraI TTTAAA 1 cut(s) 553
EaeI YGGCCR 3 cut(s) 48, 313, 378
EagI CGGCCG 1 cut(s) 378
EclXI CGGCCG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 352, 713
Eco31I GGTCTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 4, 452
Eco52I CGGCCG 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 194, 202
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 358
EcoT38I GRGCYC 2 cut(s) 352, 713
Esp3I CGTCTC 2 cut(s) 384, 468
FaeI CATG 2 cut(s) 682, 709
FaiI YATR 5 cut(s) 606, 680, 696, 707, 762
FatI CATG 2 cut(s) 678, 705
FauI CCCGC 5 cut(s) 109, 125, 129, 219, 429
Fnu4HI GCNGC 7 cut(s) 187, 303, 313, 579, 591, 690, 833
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 2 cut(s) 352, 713
Fsp4HI GCNGC 7 cut(s) 187, 303, 313, 579, 591, 690, 833
GlaI GCGC 1 cut(s) 883
GluI GCNGC 7 cut(s) 187, 303, 313, 579, 591, 690, 833
GsaI CCCAGC 1 cut(s) 759
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 8 cut(s) 38, 50, 110, 315, 380, 590, 711, 845
HapII CCGG 7 cut(s) 203, 353, 387, 402, 412, 445, 713
HhaI GCGC 1 cut(s) 884
Hin1II CATG 2 cut(s) 682, 709
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 6 cut(s) 15, 41, 272, 364, 383, 683
HpaII CCGG 7 cut(s) 203, 353, 387, 402, 412, 445, 713
HphI GGTGA 2 cut(s) 58, 241
Hpy166II GTNNAC 2 cut(s) 229, 664
Hpy188I TCNGA 7 cut(s) 34, 146, 155, 174, 452, 470, 702
Hpy188III TCNNGA 3 cut(s) 361, 387, 912
Hpy8I GTNNAC 2 cut(s) 229, 664
Hpy99I CGWCG 2 cut(s) 146, 293
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 3 cut(s) 70, 617, 650
HpyCH4IV ACGT 3 cut(s) 141, 288, 477
HpyCH4V TGCA 1 cut(s) 841
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 299, 318, 493, 587, 731, 838
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 3 cut(s) 141, 288, 477
Hsp92II CATG 2 cut(s) 682, 709
HspAI GCGC 1 cut(s) 882
Kpn2I TCCGGA 1 cut(s) 386
KspI CCGCGG 1 cut(s) 346
Kzo9I GATC 2 cut(s) 56, 174
LmnI GCTCC 7 cut(s) 84, 146, 219, 310, 347, 441, 613
Lsp1109I GCAGC 2 cut(s) 701, 819
LweI GCATC 1 cut(s) 38
MaeII ACGT 3 cut(s) 141, 288, 477
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 58, 176
MbiI CCGCTC 1 cut(s) 214
MboI GATC 2 cut(s) 56, 174
MboII GAAGA 4 cut(s) 156, 169, 172, 470
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 5 cut(s) 352, 498, 626, 713, 822
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 5 cut(s) 21, 134, 397, 554, 768
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 3 cut(s) 281, 392, 692
MmeI TCCRAC 3 cut(s) 84, 124, 152
Mox20I TGGCCA 1 cut(s) 50
MroI TCCGGA 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 50
MseI TTAA 5 cut(s) 407, 539, 552, 569, 810
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 7 cut(s) 203, 353, 387, 402, 412, 445, 713
MspR9I CCNGG 6 cut(s) 107, 203, 204, 353, 403, 713
Mva1269I GAATGC 2 cut(s) 565, 901
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 3 cut(s) 345, 578, 593
MwoI GCNNNNNNNGC 7 cut(s) 35, 299, 318, 493, 587, 731, 838
NciI CCSGG 5 cut(s) 203, 204, 353, 403, 713
NdeII GATC 2 cut(s) 56, 174
NlaIII CATG 2 cut(s) 682, 709
NlaIV GGNNCC 5 cut(s) 306, 349, 454, 623, 711
NmeAIII GCCGAG 3 cut(s) 259, 356, 406
NmuCI GTSAC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 893
PaeR7I CTCGAG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 305, 474
PctI GAATGC 2 cut(s) 565, 901
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 3 cut(s) 15, 41, 364
PinAI ACCGGT 2 cut(s) 411, 444
PkrI GCNGC 7 cut(s) 188, 304, 314, 580, 592, 691, 834
PleI GAGTC 3 cut(s) 280, 391, 691
PpsI GAGTC 3 cut(s) 280, 391, 691
PsiI TTATAA 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 755
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 5 cut(s) 306, 349, 454, 623, 711
PspOMI GGGCCC 1 cut(s) 709
PspPI GGNCC 5 cut(s) 4, 109, 452, 709, 710
PspXI VCTCGAGB 1 cut(s) 194
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 2 cut(s) 614, 677
RsaNI GTAC 2 cut(s) 613, 676
SacII CCGCGG 1 cut(s) 346
SaqAI TTAA 5 cut(s) 407, 539, 552, 569, 810
SatI GCNGC 7 cut(s) 187, 303, 313, 579, 591, 690, 833
Sau3AI GATC 2 cut(s) 56, 174
Sau96I GGNCC 5 cut(s) 4, 109, 452, 709, 710
SchI GAGTC 3 cut(s) 281, 392, 692
ScrFI CCNGG 6 cut(s) 107, 203, 204, 353, 403, 713
SduI GDGCHC 5 cut(s) 352, 498, 626, 713, 822
SfaNI GCATC 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 194
Sfr303I CCGCGG 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 893
SgrBI CCGCGG 1 cut(s) 346
SinI GGWCC 2 cut(s) 4, 452
SlaI CTCGAG 1 cut(s) 194
SmaI CCCGGG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 194, 860
SmoI CTYRAG 2 cut(s) 194, 860
Sse9I AATT 5 cut(s) 21, 134, 397, 554, 768
StyD4I CCNGG 6 cut(s) 105, 201, 202, 351, 401, 711
TaaI ACNGT 3 cut(s) 70, 617, 650
TaiI ACGT 3 cut(s) 144, 291, 480
TaqI TCGA 3 cut(s) 195, 282, 893
TaqII GACCGA 1 cut(s) 21
TasI AATT 5 cut(s) 21, 134, 397, 554, 768
TauI GCSGC 5 cut(s) 189, 305, 315, 581, 593
TfiI GAWTC 3 cut(s) 15, 41, 364
Tru1I TTAA 5 cut(s) 407, 539, 552, 569, 810
Tru9I TTAA 5 cut(s) 407, 539, 552, 569, 810
TscAI CASTG 2 cut(s) 622, 884
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 689, 832
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 3 cut(s) 214, 297, 600
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 2 cut(s) 622, 884
VpaK11BI GGWCC 2 cut(s) 4, 452
XapI RAATTY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 194
XmaI CCCGGG 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.