Cytidine deaminase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19570 |
| fragaria_vesca | FvH4_1g07230 |
| malus_domestica | MD02G1076800.v1.1 MD15G1205500.v1.1 |
| prunus_persica | Prupe.7G211600_v2.0.a1 |
| pyrus_communis | pycom02g06120 pycom15g18230 |
| rosa_chinensis | RchiOBHm_Chr2g0093131 |
| rosa_laevigata | RLG00000016371 |
| rosa_multiflora | Rmu_sc0003724.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00148480 |
| rosa_rugosa | Rorug02G0033200 |
| rosa_samantha | Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700 |
| rosa_wichuraiana | Rw2G006780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 571 |
| AccII | CGCG | 3 cut(s) | 348, 569, 596 |
| AclWI | GGATC | 2 cut(s) | 256, 358 |
| AcoI | YGGCCR | 3 cut(s) | 48, 313, 415 |
| AcsI | RAATTY | 2 cut(s) | 134, 851 |
| AdeI | CACNNNGTG | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 118, 171, 223, 352, 478, 571, 619, 695 |
| AflIII | ACRYGT | 1 cut(s) | 405 |
| AgeI | ACCGGT | 1 cut(s) | 450 |
| AjiI | CACGTC | 1 cut(s) | 484 |
| AjnI | CCWGG | 1 cut(s) | 705 |
| Alw26I | GTCTC | 4 cut(s) | 301, 384, 393, 533 |
| AlwI | GGATC | 2 cut(s) | 256, 358 |
| Ama87I | CYCGRG | 6 cut(s) | 117, 166, 194, 202, 497, 536 |
| AoxI | GGCC | 7 cut(s) | 48, 61, 205, 313, 415, 457, 514 |
| ApeKI | GCWGC | 1 cut(s) | 812 |
| ApoI | RAATTY | 2 cut(s) | 134, 851 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 126, 158 |
| AsiGI | ACCGGT | 1 cut(s) | 450 |
| AspLEI | GCGC | 3 cut(s) | 350, 571, 598 |
| AsuC2I | CCSGG | 4 cut(s) | 118, 119, 203, 204 |
| AsuHPI | GGTGA | 5 cut(s) | 58, 241, 364, 650, 808 |
| AvaI | CYCGRG | 6 cut(s) | 117, 166, 194, 202, 497, 536 |
| AvaII | GGWCC | 8 cut(s) | 4, 109, 121, 162, 226, 588, 698, 703 |
| BaeGI | GKGCMC | 1 cut(s) | 614 |
| BanII | GRGCYC | 1 cut(s) | 276 |
| BbsI | GAAGAC | 1 cut(s) | 471 |
| BbvI | GCAGC | 1 cut(s) | 799 |
| BccI | CCATC | 1 cut(s) | 134 |
| BceAI | ACGGC | 2 cut(s) | 134, 278 |
| BciT130I | CCWGG | 1 cut(s) | 707 |
| BciVI | GTATCC | 1 cut(s) | 149 |
| BcnI | CCSGG | 4 cut(s) | 118, 119, 203, 204 |
| BcoDI | GTCTC | 4 cut(s) | 301, 384, 393, 533 |
| BfaI | CTAG | 1 cut(s) | 816 |
| BfuI | GTATCC | 1 cut(s) | 149 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 35 |
| Bme1390I | CCNGG | 5 cut(s) | 118, 119, 203, 204, 707 |
| Bme18I | GGWCC | 8 cut(s) | 4, 109, 121, 162, 226, 588, 698, 703 |
| BmeT110I | CYCGRG | 6 cut(s) | 117, 166, 194, 202, 497, 536 |
| BmgBI | CACGTC | 1 cut(s) | 484 |
| BmiI | GGNNCC | 8 cut(s) | 122, 123, 148, 163, 273, 460, 590, 699 |
| BmrFI | CCNGG | 5 cut(s) | 118, 119, 203, 204, 707 |
| BpiI | GAAGAC | 1 cut(s) | 471 |
| BpmI | CTGGAG | 2 cut(s) | 408, 593 |
| BpuMI | CCSGG | 4 cut(s) | 118, 119, 203, 204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 368 |
| BsaJI | CCNNGG | 7 cut(s) | 30, 105, 117, 165, 202, 381, 843 |
| BsaWI | WCCGGW | 2 cut(s) | 450, 700 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 823, 853 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 118, 171, 223, 352, 478, 571, 619, 695 |
| Bse118I | RCCGGY | 1 cut(s) | 450 |
| Bse1I | ACTGG | 1 cut(s) | 265 |
| Bse3DI | GCAATG | 2 cut(s) | 316, 865 |
| Bse8I | GATNNNNATC | 1 cut(s) | 368 |
| BseBI | CCWGG | 1 cut(s) | 707 |
| BseDI | CCNNGG | 7 cut(s) | 30, 105, 117, 165, 202, 381, 843 |
| BseJI | GATNNNNATC | 1 cut(s) | 368 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 118, 171, 223, 352, 478, 571, 619, 695 |
| BseMI | GCAATG | 2 cut(s) | 316, 865 |
| BseNI | ACTGG | 1 cut(s) | 265 |
| BseRI | GAGGAG | 2 cut(s) | 431, 461 |
| BseSI | GKGCMC | 1 cut(s) | 614 |
| BseXI | GCAGC | 1 cut(s) | 799 |
| Bsh1236I | CGCG | 3 cut(s) | 348, 569, 596 |
| BshFI | GGCC | 7 cut(s) | 50, 63, 207, 315, 417, 459, 516 |
| BshTI | ACCGGT | 1 cut(s) | 450 |
| BsiHKCI | CYCGRG | 6 cut(s) | 117, 166, 194, 202, 497, 536 |
| BsiSI | CCGG | 4 cut(s) | 118, 203, 451, 701 |
| BslFI | GGGAC | 3 cut(s) | 73, 107, 574 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 118, 171, 223, 352, 478, 571, 619, 695 |
| BsmAI | GTCTC | 4 cut(s) | 301, 384, 393, 533 |
| BsmBI | CGTCTC | 3 cut(s) | 301, 384, 393 |
| BsmFI | GGGAC | 3 cut(s) | 73, 107, 574 |
| BsnI | GGCC | 7 cut(s) | 50, 63, 207, 315, 417, 459, 516 |
| BsoBI | CYCGRG | 6 cut(s) | 117, 166, 194, 202, 497, 536 |
| Bsp1286I | GDGCHC | 2 cut(s) | 276, 614 |
| Bsp143I | GATC | 2 cut(s) | 261, 363 |
| BspANI | GGCC | 7 cut(s) | 50, 63, 207, 315, 417, 459, 516 |
| BspFNI | CGCG | 3 cut(s) | 348, 569, 596 |
| BspLI | GGNNCC | 8 cut(s) | 122, 123, 148, 163, 273, 460, 590, 699 |
| BspPI | GGATC | 2 cut(s) | 256, 358 |
| BsrDI | GCAATG | 2 cut(s) | 316, 865 |
| BsrFI | RCCGGY | 1 cut(s) | 450 |
| BsrI | ACTGG | 1 cut(s) | 265 |
| BssAI | RCCGGY | 1 cut(s) | 450 |
| BssECI | CCNNGG | 7 cut(s) | 30, 105, 117, 165, 202, 381, 843 |
| BssMI | GATC | 2 cut(s) | 261, 363 |
| BssT1I | CCWWGG | 2 cut(s) | 105, 843 |
| Bst2UI | CCWGG | 1 cut(s) | 707 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 638 |
| BstC8I | GCNNGC | 1 cut(s) | 810 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 476 |
| BstFNI | CGCG | 3 cut(s) | 348, 569, 596 |
| BstHHI | GCGC | 3 cut(s) | 350, 571, 598 |
| BstKTI | GATC | 2 cut(s) | 264, 366 |
| BstMAI | GTCTC | 4 cut(s) | 301, 384, 393, 533 |
| BstMBI | GATC | 2 cut(s) | 261, 363 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 35, 44, 299, 318, 321, 423, 432, 575, 741 |
| BstNI | CCWGG | 1 cut(s) | 707 |
| BstSCI | CCNGG | 5 cut(s) | 116, 117, 201, 202, 705 |
| BstSLI | GKGCMC | 1 cut(s) | 614 |
| BstUI | CGCG | 3 cut(s) | 348, 569, 596 |
| BstV1I | GCAGC | 1 cut(s) | 799 |
| BstV2I | GAAGAC | 1 cut(s) | 471 |
| BstX2I | RGATCY | 1 cut(s) | 363 |
| BstYI | RGATCY | 1 cut(s) | 363 |
| BsuI | GTATCC | 1 cut(s) | 149 |
| BsuRI | GGCC | 7 cut(s) | 50, 63, 207, 315, 417, 459, 516 |
| BtrI | CACGTC | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 1 cut(s) | 810 |
| CfoI | GCGC | 3 cut(s) | 350, 571, 598 |
| Cfr10I | RCCGGY | 1 cut(s) | 450 |
| Cfr9I | CCCGGG | 2 cut(s) | 117, 202 |
| CspAI | ACCGGT | 1 cut(s) | 450 |
| CviAII | CATG | 1 cut(s) | 694 |
| DpnI | GATC | 2 cut(s) | 263, 365 |
| DpnII | GATC | 2 cut(s) | 261, 363 |
| DraIII | CACNNNGTG | 1 cut(s) | 411 |
| EaeI | YGGCCR | 3 cut(s) | 48, 313, 415 |
| EciI | GGCGGA | 6 cut(s) | 53, 91, 289, 332, 367, 422 |
| Eco130I | CCWWGG | 2 cut(s) | 105, 843 |
| Eco24I | GRGCYC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 8 cut(s) | 4, 109, 121, 162, 226, 588, 698, 703 |
| Eco88I | CYCGRG | 6 cut(s) | 117, 166, 194, 202, 497, 536 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 476 |
| EcoO109I | RGGNCCY | 5 cut(s) | 61, 109, 121, 162, 588 |
| EcoRII | CCWGG | 1 cut(s) | 705 |
| EcoT14I | CCWWGG | 2 cut(s) | 105, 843 |
| EcoT38I | GRGCYC | 1 cut(s) | 276 |
| ErhI | CCWWGG | 2 cut(s) | 105, 843 |
| Esp3I | CGTCTC | 3 cut(s) | 301, 384, 393 |
| FaeI | CATG | 1 cut(s) | 697 |
| FaiI | YATR | 5 cut(s) | 666, 668, 684, 695, 750 |
| FaqI | GGGAC | 3 cut(s) | 73, 107, 574 |
| FatI | CATG | 1 cut(s) | 693 |
| FauI | CCCGC | 2 cut(s) | 284, 737 |
| FriOI | GRGCYC | 1 cut(s) | 276 |
| FspBI | CTAG | 1 cut(s) | 816 |
| GlaI | GCGC | 3 cut(s) | 349, 570, 597 |
| GsuI | CTGGAG | 2 cut(s) | 408, 593 |
| HaeIII | GGCC | 7 cut(s) | 50, 63, 207, 315, 417, 459, 516 |
| HapII | CCGG | 4 cut(s) | 118, 203, 451, 701 |
| HhaI | GCGC | 3 cut(s) | 350, 571, 598 |
| Hin1II | CATG | 1 cut(s) | 697 |
| Hin6I | GCGC | 3 cut(s) | 348, 569, 596 |
| HinP1I | GCGC | 3 cut(s) | 348, 569, 596 |
| HincII | GTYRAC | 1 cut(s) | 190 |
| HindII | GTYRAC | 1 cut(s) | 190 |
| HinfI | GANTC | 5 cut(s) | 15, 41, 98, 628, 671 |
| HpaII | CCGG | 4 cut(s) | 118, 203, 451, 701 |
| HphI | GGTGA | 5 cut(s) | 58, 241, 364, 650, 808 |
| Hpy166II | GTNNAC | 2 cut(s) | 190, 229 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 146, 155, 271, 690 |
| Hpy188III | TCNNGA | 6 cut(s) | 259, 335, 361, 497, 499, 632 |
| Hpy8I | GTNNAC | 2 cut(s) | 190, 229 |
| Hpy99I | CGWCG | 7 cut(s) | 74, 98, 146, 155, 293, 479, 554 |
| HpyAV | CCTTC | 1 cut(s) | 52 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 638 |
| HpyCH4IV | ACGT | 3 cut(s) | 288, 407, 483 |
| HpyCH4V | TGCA | 3 cut(s) | 829, 865, 870 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 35, 44, 299, 318, 321, 423, 432, 575, 741 |
| HpySE526I | ACGT | 3 cut(s) | 288, 407, 483 |
| Hsp92II | CATG | 1 cut(s) | 697 |
| HspAI | GCGC | 3 cut(s) | 348, 569, 596 |
| KflI | GGGWCCC | 1 cut(s) | 121 |
| Kzo9I | GATC | 2 cut(s) | 261, 363 |
| LmnI | GCTCC | 3 cut(s) | 146, 271, 805 |
| Lsp1109I | GCAGC | 1 cut(s) | 799 |
| MaeI | CTAG | 1 cut(s) | 816 |
| MaeII | ACGT | 3 cut(s) | 288, 407, 483 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 2 cut(s) | 263, 365 |
| MboI | GATC | 2 cut(s) | 261, 363 |
| MboII | GAAGA | 3 cut(s) | 172, 476, 658 |
| MflI | RGATCY | 1 cut(s) | 363 |
| MhlI | GDGCHC | 2 cut(s) | 276, 614 |
| MluCI | AATT | 4 cut(s) | 134, 326, 419, 851 |
| MlyI | GAGTC | 2 cut(s) | 50, 107 |
| MmeI | TCCRAC | 3 cut(s) | 124, 133, 249 |
| MslI | CAYNNNNRTG | 1 cut(s) | 510 |
| MspA1I | CMGCKG | 1 cut(s) | 47 |
| MspI | CCGG | 4 cut(s) | 118, 203, 451, 701 |
| MspR9I | CCNGG | 5 cut(s) | 118, 119, 203, 204, 707 |
| MvaI | CCWGG | 1 cut(s) | 707 |
| MvnI | CGCG | 3 cut(s) | 348, 569, 596 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 35, 44, 299, 318, 321, 423, 432, 575, 741 |
| NciI | CCSGG | 4 cut(s) | 118, 119, 203, 204 |
| NdeII | GATC | 2 cut(s) | 261, 363 |
| NlaIII | CATG | 1 cut(s) | 697 |
| NlaIV | GGNNCC | 8 cut(s) | 122, 123, 148, 163, 273, 460, 590, 699 |
| NmeAIII | GCCGAG | 2 cut(s) | 259, 406 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| PaeR7I | CTCGAG | 2 cut(s) | 194, 497 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 399, 480 |
| PfeI | GAWTC | 3 cut(s) | 15, 628, 671 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 571 |
| PinAI | ACCGGT | 1 cut(s) | 450 |
| PleI | GAGTC | 2 cut(s) | 49, 106 |
| PpsI | GAGTC | 2 cut(s) | 49, 106 |
| PpuMI | RGGWCCY | 4 cut(s) | 109, 121, 162, 588 |
| Psp5II | RGGWCCY | 4 cut(s) | 109, 121, 162, 588 |
| Psp6I | CCWGG | 1 cut(s) | 705 |
| PspGI | CCWGG | 1 cut(s) | 705 |
| PspN4I | GGNNCC | 8 cut(s) | 122, 123, 148, 163, 273, 460, 590, 699 |
| PspPPI | RGGWCCY | 4 cut(s) | 109, 121, 162, 588 |
| PspXI | VCTCGAGB | 1 cut(s) | 194 |
| PsuI | RGATCY | 1 cut(s) | 363 |
| RseI | CAYNNNNRTG | 1 cut(s) | 510 |
| Sau3AI | GATC | 2 cut(s) | 261, 363 |
| SchI | GAGTC | 2 cut(s) | 50, 107 |
| ScrFI | CCNGG | 5 cut(s) | 118, 119, 203, 204, 707 |
| SduI | GDGCHC | 2 cut(s) | 276, 614 |
| Sfr274I | CTCGAG | 2 cut(s) | 194, 497 |
| SinI | GGWCC | 8 cut(s) | 4, 109, 121, 162, 226, 588, 698, 703 |
| SlaI | CTCGAG | 2 cut(s) | 194, 497 |
| SmaI | CCCGGG | 2 cut(s) | 119, 204 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 510 |
| SmlI | CTYRAG | 2 cut(s) | 194, 497 |
| SmoI | CTYRAG | 2 cut(s) | 194, 497 |
| Sse9I | AATT | 4 cut(s) | 134, 326, 419, 851 |
| SspMI | CTAG | 1 cut(s) | 816 |
| StyD4I | CCNGG | 5 cut(s) | 116, 117, 201, 202, 705 |
| StyI | CCWWGG | 2 cut(s) | 105, 843 |
| TaaI | ACNGT | 2 cut(s) | 70, 638 |
| TaiI | ACGT | 3 cut(s) | 291, 410, 486 |
| TaqI | TCGA | 8 cut(s) | 24, 96, 195, 260, 282, 474, 498, 849 |
| TaqII | GACCGA | 2 cut(s) | 21, 214 |
| TasI | AATT | 4 cut(s) | 134, 326, 419, 851 |
| TfiI | GAWTC | 3 cut(s) | 15, 628, 671 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| TseI | GCWGC | 1 cut(s) | 812 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspMI | CCCGGG | 2 cut(s) | 117, 202 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 571 |
| VpaK11BI | GGWCC | 8 cut(s) | 4, 109, 121, 162, 226, 588, 698, 703 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 476 |
| XapI | RAATTY | 2 cut(s) | 134, 851 |
| XhoI | CTCGAG | 2 cut(s) | 194, 497 |
| XmaI | CCCGGG | 2 cut(s) | 117, 202 |
| XspI | CTAG | 1 cut(s) | 816 |