pycom15g18230

Cytidine deaminase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
12921964 .. 12923189
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18230.1

Sequence Viewer

Length: 1095 bp
ATGAGGCAACGAGATAATCTCTTACATTATGCAACATCCACTTCAAACCTCTATATAAACAACTCCCATTCCCTCCCCACTCCCTCTCCCACCACATTTCTAGGATCTCTCCCTCTCCGATCCCAACCCACCTATCCCATCAACCGGGACGACCCGCCCACCCCTCTCCCCGAAATGGACCGACCCAGATTCGTAATCGAAGCCTCCGAGGCCGAATCAATGGCCAAGCAGTCCAACCTCACCGTCCTCCAGCTCCTCCCCTCCCTCGTCAAGCCCGCCCAGGCCCTCGCCCGCCCGCCCATCTCCAAATTCCACGTCGGAGCCGTCGGGTACGGTTCATCGGGTCGGATCTTCCTCGGCGTCAACCTCGAGTTCCCGGGTCTCCCCCTCCACTACTCGGTCCACGCCGAGCAGTTCCTCGTCACCAACCTCTCAATCCATTCGGAATCAAAGCTCCGATACATCGCCGTCTCCGCCGCCCCTTGTGGCCATTGCCGCCAGTTCTTCCAAGAAATCCGCGGAGCCCAGGATATCCAGATCCTAATTACCTCGGTGGAATCAGGCGACGACAACTCCGGGCTAAACGGTTTCGACCCGCTTCTCCGTTTACTCCCCCACCGATTCGGACCCGAAGACCTCCTGGGACAGGACGTGCCGTTGCTCTTAGAGCAGCACGAAAACGGCCAGTCGTTTTTGAGCGAAACCGAGAATTTAACCGGAGATTTTAAACTGAATGCGGAGTTAAAAGCCGCGGCTTTAGAGGCCGCGAATAAGTCACACGCGCCGTACAGCGGGTGCCCGTCGGGTGTGGCGATTTTGGACTCCGACGGGAAAATGTACAAAGGGTCGTACATGGAGTCCGCCGCCTATAATCCGAGCATGGGCCCGGCTCAGGCGGCGCTGGTGGCTTACATTGTCGGCGGTGGTGGCGGGTATGAGAAAATTGTGGGCGCGGTTTTGGTGGAAAAAGCTGACGTCTTGGTTAAGCAAGAGCACACGGCGAGGTTGCTATTTCAGGCAATCTCGCCCAAGGTCGATTTTCGGGTTTTTCACTGCGGTTCGGGTTCAAATTGTGTAAAAAGTCTTGATCTTTGA

Protein Analysis

365

Amino Acids

39.38

Weight (kDa)

5.94

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dCMP_cyt_deam_1 PF00383 89 - 173 9.4e-12 Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2 PF08211 202 - 335 9.7e-47 Cytidine and deoxycytidylate deaminase zinc-binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19570
fragaria_vesca FvH4_1g07230
malus_domestica MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica Prupe.7G211600_v2.0.a1
pyrus_communis pycom02g06120 pycom15g18230
rosa_chinensis RchiOBHm_Chr2g0093131
rosa_laevigata RLG00000016371
rosa_multiflora Rmu_sc0003724.1_g000003
rosa_roxburghii Rroxscaffold_2G00148480
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana Rw2G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 795
AccII CGCG 5 cut(s) 519, 752, 767, 782, 953
AclWI GGATC 4 cut(s) 112, 114, 356, 532
AcoI YGGCCR 3 cut(s) 222, 487, 682
AcsI RAATTY 2 cut(s) 308, 709
AcyI GRCGYC 2 cut(s) 360, 975
AfaI GTAC 4 cut(s) 332, 788, 839, 851
AfiI CCNNNNNNNGG 7 cut(s) 144, 175, 397, 646, 791, 881, 892
AgsI TTSAA 2 cut(s) 45, 1068
AjiI CACGTC 2 cut(s) 316, 652
AjnI CCWGG 3 cut(s) 279, 525, 639
AluBI AGCT 3 cut(s) 253, 454, 971
AluI AGCT 3 cut(s) 253, 454, 971
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 2 cut(s) 386, 475
AlwI GGATC 4 cut(s) 112, 114, 356, 532
Ama87I CYCGRG 2 cut(s) 368, 376
AoxI GGCC 7 cut(s) 210, 222, 282, 487, 682, 762, 883
ApaI GGGCCC 1 cut(s) 887
ApeKI GCWGC 1 cut(s) 670
ApoI RAATTY 2 cut(s) 308, 709
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AspLEI GCGC 3 cut(s) 784, 901, 953
AspS9I GGNCC 6 cut(s) 178, 283, 400, 626, 883, 884
AsuC2I CCSGG 5 cut(s) 146, 377, 378, 577, 887
AsuHPI GGTGA 2 cut(s) 232, 415
AvaI CYCGRG 2 cut(s) 368, 376
AvaII GGWCC 3 cut(s) 178, 400, 626
BaeGI GKGCMC 2 cut(s) 800, 887
BalI TGGCCA 2 cut(s) 224, 489
BanI GGYRCC 1 cut(s) 795
BanII GRGCYC 2 cut(s) 526, 887
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 682
BccI CCATC 2 cut(s) 146, 308
BceAI ACGGC 6 cut(s) 308, 452, 640, 697, 769, 1014
BciT130I CCWGG 3 cut(s) 281, 527, 641
BcnI CCSGG 5 cut(s) 146, 377, 378, 577, 887
BcoDI GTCTC 2 cut(s) 386, 475
BfaI CTAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 902
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 8 cut(s) 477, 496, 671, 750, 753, 765, 864, 897
BlsI GCNGC 8 cut(s) 478, 497, 672, 751, 754, 766, 865, 898
Bme1390I CCNGG 8 cut(s) 146, 281, 377, 378, 527, 577, 641, 887
Bme18I GGWCC 3 cut(s) 178, 400, 626
BmeT110I CYCGRG 2 cut(s) 368, 376
BmgBI CACGTC 2 cut(s) 316, 652
BmgT120I GGNCC 6 cut(s) 178, 283, 400, 626, 883, 884
BmiI GGNNCC 5 cut(s) 322, 523, 628, 797, 885
BmrFI CCNGG 8 cut(s) 146, 281, 377, 378, 527, 577, 641, 887
BpiI GAAGAC 1 cut(s) 639
BplI GAGNNNNNCTC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 891
BpuMI CCSGG 5 cut(s) 146, 377, 378, 577, 887
BsaHI GRCGYC 2 cut(s) 360, 975
BsaI GGTCTC 1 cut(s) 386
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 557, 587
Bsc4I CCNNNNNNNGG 7 cut(s) 144, 175, 397, 646, 791, 881, 892
Bse1I ACTGG 2 cut(s) 499, 685
Bse3DI GCAATG 1 cut(s) 490
BseBI CCWGG 3 cut(s) 281, 527, 641
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 7 cut(s) 144, 175, 397, 646, 791, 881, 892
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 905
BseNI ACTGG 2 cut(s) 499, 685
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 2 cut(s) 800, 887
BseXI GCAGC 1 cut(s) 682
Bsh1236I CGCG 5 cut(s) 519, 752, 767, 782, 953
BshFI GGCC 7 cut(s) 212, 224, 284, 489, 684, 764, 885
BshNI GGYRCC 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 2 cut(s) 368, 376
BsiSI CCGG 5 cut(s) 145, 377, 576, 717, 887
BslFI GGGAC 2 cut(s) 161, 657
BslI CCNNNNNNNGG 7 cut(s) 144, 175, 397, 646, 791, 881, 892
BsmAI GTCTC 2 cut(s) 386, 475
BsmBI CGTCTC 1 cut(s) 475
BsmFI GGGAC 2 cut(s) 161, 657
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 7 cut(s) 212, 224, 284, 489, 684, 764, 885
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 2 cut(s) 368, 376
Bsp120I GGGCCC 1 cut(s) 883
Bsp1286I GDGCHC 4 cut(s) 526, 800, 887, 996
Bsp1407I TGTACA 1 cut(s) 837
Bsp143I GATC 5 cut(s) 104, 119, 348, 537, 1087
BspANI GGCC 7 cut(s) 212, 224, 284, 489, 684, 764, 885
BspCNI CTCAG 1 cut(s) 904
BspFNI CGCG 5 cut(s) 519, 752, 767, 782, 953
BspLI GGNNCC 5 cut(s) 322, 523, 628, 797, 885
BspPI GGATC 4 cut(s) 112, 114, 356, 532
BspT107I GGYRCC 1 cut(s) 795
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 2 cut(s) 499, 685
BssMI GATC 5 cut(s) 104, 119, 348, 537, 1087
BssNI GRCGYC 2 cut(s) 360, 975
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 3 cut(s) 281, 527, 641
Bst4CI ACNGT 3 cut(s) 244, 335, 587
BstACI GRCGYC 2 cut(s) 360, 975
BstAUI TGTACA 1 cut(s) 837
BstC8I GCNNGC 3 cut(s) 276, 292, 296
BstDEI CTNAG 2 cut(s) 664, 891
BstDSI CCRYGG 2 cut(s) 517, 750
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 5 cut(s) 519, 752, 767, 782, 953
BstH2I RGCGCY 1 cut(s) 902
BstHHI GCGC 3 cut(s) 784, 901, 953
BstKTI GATC 5 cut(s) 107, 122, 351, 540, 1090
BstMAI GTCTC 2 cut(s) 386, 475
BstMBI GATC 5 cut(s) 104, 119, 348, 537, 1087
BstMWI GCNNNNNNNGC 8 cut(s) 209, 473, 495, 667, 761, 896, 905, 927
BstNI CCWGG 3 cut(s) 281, 527, 641
BstSCI CCNGG 8 cut(s) 144, 279, 375, 376, 525, 575, 639, 885
BstSLI GKGCMC 2 cut(s) 800, 887
BstUI CGCG 5 cut(s) 519, 752, 767, 782, 953
BstV1I GCAGC 1 cut(s) 682
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 3 cut(s) 104, 348, 537
BstYI RGATCY 3 cut(s) 104, 348, 537
BsuRI GGCC 7 cut(s) 212, 224, 284, 489, 684, 764, 885
BtgI CCRYGG 2 cut(s) 517, 750
BtgZI GCGATG 1 cut(s) 448
BtrI CACGTC 2 cut(s) 316, 652
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 1 cut(s) 1051
Cac8I GCNNGC 3 cut(s) 276, 292, 296
CfoI GCGC 3 cut(s) 784, 901, 953
Cfr13I GGNCC 6 cut(s) 178, 283, 400, 626, 883, 884
Cfr42I CCGCGG 2 cut(s) 520, 753
Cfr9I CCCGGG 1 cut(s) 376
CseI GACGC 1 cut(s) 349
Csp6I GTAC 4 cut(s) 331, 787, 838, 850
CviAII CATG 2 cut(s) 853, 880
CviQI GTAC 4 cut(s) 331, 787, 838, 850
DdeI CTNAG 2 cut(s) 664, 891
DpnI GATC 5 cut(s) 106, 121, 350, 539, 1089
DpnII GATC 5 cut(s) 104, 119, 348, 537, 1087
DraI TTTAAA 1 cut(s) 727
EaeI YGGCCR 3 cut(s) 222, 487, 682
EciI GGCGGA 2 cut(s) 463, 850
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 2 cut(s) 526, 887
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 178, 400, 626
Eco88I CYCGRG 2 cut(s) 368, 376
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 279, 525, 639
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 2 cut(s) 526, 887
ErhI CCWWGG 1 cut(s) 1029
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 2 cut(s) 856, 883
FaiI YATR 7 cut(s) 30, 54, 56, 854, 870, 881, 936
FaqI GGGAC 2 cut(s) 161, 657
FatI CATG 2 cut(s) 852, 879
FauI CCCGC 7 cut(s) 162, 283, 299, 303, 603, 785, 923
Fnu4HI GCNGC 8 cut(s) 477, 496, 671, 750, 753, 765, 864, 897
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 2 cut(s) 526, 887
Fsp4HI GCNGC 8 cut(s) 477, 496, 671, 750, 753, 765, 864, 897
FspBI CTAG 1 cut(s) 101
GlaI GCGC 3 cut(s) 783, 900, 952
GluI GCNGC 8 cut(s) 477, 496, 671, 750, 753, 765, 864, 897
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 902
HaeIII GGCC 7 cut(s) 212, 224, 284, 489, 684, 764, 885
HapII CCGG 5 cut(s) 145, 377, 576, 717, 887
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 784, 901, 953
Hin1I GRCGYC 2 cut(s) 360, 975
Hin1II CATG 2 cut(s) 856, 883
Hin6I GCGC 3 cut(s) 782, 899, 951
HinP1I GCGC 3 cut(s) 782, 899, 951
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 7 cut(s) 189, 215, 446, 557, 621, 821, 857
HpaII CCGG 5 cut(s) 145, 377, 576, 717, 887
HphI GGTGA 2 cut(s) 232, 415
Hpy166II GTNNAC 3 cut(s) 364, 403, 608
Hpy188I TCNGA 9 cut(s) 119, 208, 320, 348, 445, 458, 626, 826, 876
Hpy188III TCNNGA 2 cut(s) 535, 1085
Hpy8I GTNNAC 3 cut(s) 364, 403, 608
Hpy99I CGWCG 5 cut(s) 320, 329, 569, 805, 830
HpyCH4III ACNGT 3 cut(s) 244, 335, 587
HpyCH4IV ACGT 3 cut(s) 315, 651, 975
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 8 cut(s) 209, 473, 495, 667, 761, 896, 905, 927
HpyF3I CTNAG 2 cut(s) 664, 891
HpySE526I ACGT 3 cut(s) 315, 651, 975
Hsp92I GRCGYC 2 cut(s) 360, 975
Hsp92II CATG 2 cut(s) 856, 883
HspAI GCGC 3 cut(s) 782, 899, 951
KspI CCGCGG 2 cut(s) 520, 753
Kzo9I GATC 5 cut(s) 104, 119, 348, 537, 1087
LmnI GCTCC 4 cut(s) 258, 320, 459, 521
Lsp1109I GCAGC 1 cut(s) 682
MaeI CTAG 1 cut(s) 101
MaeII ACGT 3 cut(s) 315, 651, 975
MaeIII GTNAC 2 cut(s) 421, 774
MalI GATC 5 cut(s) 106, 121, 350, 539, 1089
MboI GATC 5 cut(s) 104, 119, 348, 537, 1087
MboII GAAGA 3 cut(s) 343, 496, 644
MflI RGATCY 3 cut(s) 104, 348, 537
MhlI GDGCHC 4 cut(s) 526, 800, 887, 996
MlsI TGGCCA 2 cut(s) 224, 489
MluCI AATT 5 cut(s) 308, 543, 709, 942, 1069
MluNI TGGCCA 2 cut(s) 224, 489
MlyI GAGTC 2 cut(s) 815, 866
MmeI TCCRAC 4 cut(s) 258, 298, 326, 849
Mox20I TGGCCA 2 cut(s) 224, 489
MscI TGGCCA 2 cut(s) 224, 489
MseI TTAA 4 cut(s) 713, 726, 743, 984
Msp20I TGGCCA 2 cut(s) 224, 489
MspA1I CMGCKG 3 cut(s) 519, 752, 792
MspI CCGG 5 cut(s) 145, 377, 576, 717, 887
MspR9I CCNGG 8 cut(s) 146, 281, 377, 378, 527, 577, 641, 887
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 3 cut(s) 281, 527, 641
MvnI CGCG 5 cut(s) 519, 752, 767, 782, 953
MwoI GCNNNNNNNGC 8 cut(s) 209, 473, 495, 667, 761, 896, 905, 927
NciI CCSGG 5 cut(s) 146, 377, 378, 577, 887
NdeII GATC 5 cut(s) 104, 119, 348, 537, 1087
NlaIII CATG 2 cut(s) 856, 883
NlaIV GGNNCC 5 cut(s) 322, 523, 628, 797, 885
NmeAIII GCCGAG 2 cut(s) 336, 433
NmuCI GTSAC 2 cut(s) 421, 774
PaeR7I CTCGAG 1 cut(s) 368
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 321, 809
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 5 cut(s) 189, 215, 446, 557, 621
PkrI GCNGC 8 cut(s) 478, 497, 672, 751, 754, 766, 865, 898
PleI GAGTC 2 cut(s) 815, 865
PpsI GAGTC 2 cut(s) 815, 865
Psp6I CCWGG 3 cut(s) 279, 525, 639
PspGI CCWGG 3 cut(s) 279, 525, 639
PspN4I GGNNCC 5 cut(s) 322, 523, 628, 797, 885
PspOMI GGGCCC 1 cut(s) 883
PspPI GGNCC 6 cut(s) 178, 283, 400, 626, 883, 884
PspXI VCTCGAGB 1 cut(s) 368
PsuI RGATCY 3 cut(s) 104, 348, 537
RsaI GTAC 4 cut(s) 332, 788, 839, 851
RsaNI GTAC 4 cut(s) 331, 787, 838, 850
SacII CCGCGG 2 cut(s) 520, 753
SaqAI TTAA 4 cut(s) 713, 726, 743, 984
SatI GCNGC 8 cut(s) 477, 496, 671, 750, 753, 765, 864, 897
Sau3AI GATC 5 cut(s) 104, 119, 348, 537, 1087
Sau96I GGNCC 6 cut(s) 178, 283, 400, 626, 883, 884
SchI GAGTC 2 cut(s) 815, 866
ScrFI CCNGG 8 cut(s) 146, 281, 377, 378, 527, 577, 641, 887
SduI GDGCHC 4 cut(s) 526, 800, 887, 996
Sfr274I CTCGAG 1 cut(s) 368
Sfr303I CCGCGG 2 cut(s) 520, 753
SgrBI CCGCGG 2 cut(s) 520, 753
SinI GGWCC 3 cut(s) 178, 400, 626
SlaI CTCGAG 1 cut(s) 368
SmaI CCCGGG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 5 cut(s) 308, 543, 709, 942, 1069
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 8 cut(s) 144, 279, 375, 376, 525, 575, 639, 885
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 3 cut(s) 244, 335, 587
TaiI ACGT 3 cut(s) 318, 654, 978
TaqI TCGA 4 cut(s) 198, 369, 591, 1035
TaqII GACCGA 2 cut(s) 195, 388
TasI AATT 5 cut(s) 308, 543, 709, 942, 1069
TatI WGTACW 1 cut(s) 837
TauI GCSGC 7 cut(s) 479, 498, 752, 755, 767, 866, 899
TfiI GAWTC 5 cut(s) 189, 215, 446, 557, 621
Tru1I TTAA 4 cut(s) 713, 726, 743, 984
Tru9I TTAA 4 cut(s) 713, 726, 743, 984
TscAI CASTG 1 cut(s) 1058
TseFI GTSAC 2 cut(s) 421, 774
TseI GCWGC 1 cut(s) 670
Tsp45I GTSAC 2 cut(s) 421, 774
TspDTI ATGAA 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 593
TspMI CCCGGG 1 cut(s) 376
TspRI CASTG 1 cut(s) 1058
VpaK11BI GGWCC 3 cut(s) 178, 400, 626
XagI CCTNNNNNAGG 1 cut(s) 644
XapI RAATTY 2 cut(s) 308, 709
XhoI CTCGAG 1 cut(s) 368
XmaI CCCGGG 1 cut(s) 376
XspI CTAG 1 cut(s) 101
ZraI GACGTC 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.