Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014287

Physical Location & Seq

Genomic Coordinates Forward (+)

3823250 .. 3824645

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCCGACCCAGATTCGTAATCGAAGCCTCAGAGGCCGAGTCGATGGCCAAGCAGTCCGGTCTCACCGTCGTCCAGCTCCTCCCGTCCCTCGTCAAGTCCGCCCAGTCCCTCGCCCGGGTCCCCATCTCCAAATTCCACGTCGGAGCCGTCGGGTACGGGTCCTCGGGTCGGATCTTCTTCGGAGTCAACCTCGAGTTCCCGGGCCTCCCTCTCCACTACTCCGTCCACGCCGAGCAGTTCCTCGTCACCAACCTCTCGATCCAGTCGGAGCCCCGACTCGACTACGTCGCCGTCTCCGCCGCCCCCTGCGGCCATTGCCGCCAATTCTTCCAGGAAATCCGCCGCGCTCAGGACATCAACATCCTCATCACCTCCGATGAATCCGGAGACGACGAAAACGACAAGTCGTGCGGCCAGTTCAGCCCGCTCCGCCACCTCCTCCCCCGCCGGTTCGGCCCCGAAGACCTGCTCGGCGAGGACGTGCCGTTAGTCCTCGAGAAACACAACAATGCCCTATCGTTCATCAACAAACCCGAAACTTTCGGGGACGATTTATTAATCCACGCGCTGGAGGCGGCGAATAGGTCGCACGCGCCGTACAGCCAGTGCCCGTCTGGGGTGGCGATTATGGACAGTGAGGGGAAGATTTACAGAGGGTGGTATATGGAGTCGGCGGCGTATAATCCGAGCATGGGTCCGGTAAGGGCGGCGCTGGTGGATTACATTGTCAGCGGCGGCGGCGGGTATGAGCAAATCGTGGCGGCGGTTCTGGTGGAGAAGGAGGATGCTTTGGTTAAGCAGGAGCAGACTGCTAGGCTGCTGTTGCAGACCATTTCTCCCAAGCTCGAATTTCGGGTTTTGCATTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

292

Amino Acids

31.98

Weight (kDa)

5.73

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	31 - 115	8.7e-12	Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2	PF08211	144 - 273	4.4e-48	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19570
fragaria_vesca	FvH4_1g07230
malus_domestica	MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica	Prupe.7G211600_v2.0.a1
pyrus_communis	pycom02g06120 pycom15g18230
rosa_chinensis	RchiOBHm_Chr2g0093131
rosa_laevigata	RLG00000016371
rosa_multiflora	Rmu_sc0003724.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148480
rosa_rugosa	Rorug02G0033200
rosa_samantha	Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana	Rw2G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	430
AccII	CGCG	3 cut(s)	348, 569, 596
AccIII	TCCGGA	1 cut(s)	386
AclWI	GGATC	2 cut(s)	182, 256
AcoI	YGGCCR	3 cut(s)	48, 313, 415
AcsI	RAATTY	2 cut(s)	134, 851
AfaI	GTAC	2 cut(s)	158, 602
AfiI	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 571, 619, 695
AjiI	CACGTC	2 cut(s)	142, 484
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	79, 847
AluI	AGCT	2 cut(s)	79, 847
Alw26I	GTCTC	3 cut(s)	68, 301, 384
AlwI	GGATC	2 cut(s)	182, 256
Ama87I	CYCGRG	5 cut(s)	117, 166, 194, 202, 497
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	7 cut(s)	3, 36, 48, 205, 313, 415, 457
ApeKI	GCWGC	1 cut(s)	820
ApoI	RAATTY	2 cut(s)	134, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AseI	ATTAAT	1 cut(s)	560
AspLEI	GCGC	4 cut(s)	350, 571, 598, 715
AspS9I	GGNCC	6 cut(s)	4, 121, 162, 205, 458, 698
AsuC2I	CCSGG	4 cut(s)	118, 119, 203, 204
AsuHPI	GGTGA	3 cut(s)	58, 241, 364
AvaI	CYCGRG	5 cut(s)	117, 166, 194, 202, 497
AvaII	GGWCC	3 cut(s)	121, 162, 698
BaeGI	GKGCMC	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	807
BccI	CCATC	2 cut(s)	40, 134
BceAI	ACGGC	4 cut(s)	134, 278, 472, 583
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	4 cut(s)	118, 119, 203, 204
BcoDI	GTCTC	3 cut(s)	68, 301, 384
BfaI	CTAG	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	477
BglI	GCCNNNNNGGC	2 cut(s)	35, 456
Bme1390I	CCNGG	5 cut(s)	118, 119, 203, 204, 335
Bme18I	GGWCC	3 cut(s)	121, 162, 698
BmeT110I	CYCGRG	5 cut(s)	117, 166, 194, 202, 497
BmgBI	CACGTC	2 cut(s)	142, 484
BmgT120I	GGNCC	6 cut(s)	4, 121, 162, 205, 458, 698
BmiI	GGNNCC	7 cut(s)	122, 123, 148, 163, 273, 460, 699
BmrFI	CCNGG	5 cut(s)	118, 119, 203, 204, 335
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	351
BpuMI	CCSGG	4 cut(s)	118, 119, 203, 204
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	117, 165, 202
BsaWI	WCCGGW	3 cut(s)	59, 386, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	823, 853
Bsc4I	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 571, 619, 695
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	4 cut(s)	106, 265, 418, 607
Bse3DI	GCAATG	2 cut(s)	316, 865
BseAI	TCCGGA	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	117, 165, 202
BseGI	GGATG	2 cut(s)	363, 793
BseLI	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 571, 619, 695
BseMI	GCAATG	2 cut(s)	316, 865
BseMII	CTCAG	2 cut(s)	45, 365
BseNI	ACTGG	4 cut(s)	106, 265, 418, 607
BseRI	GAGGAG	2 cut(s)	71, 431
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	807
Bsh1236I	CGCG	3 cut(s)	348, 569, 596
BshFI	GGCC	7 cut(s)	5, 38, 50, 207, 315, 417, 459
BsiHKCI	CYCGRG	5 cut(s)	117, 166, 194, 202, 497
BsiSI	CCGG	6 cut(s)	60, 118, 203, 387, 451, 701
BslFI	GGGAC	4 cut(s)	73, 94, 107, 563
BslI	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 571, 619, 695
BsmAI	GTCTC	3 cut(s)	68, 301, 384
BsmBI	CGTCTC	2 cut(s)	301, 384
BsmFI	GGGAC	4 cut(s)	73, 94, 107, 563
BsnI	GGCC	7 cut(s)	5, 38, 50, 207, 315, 417, 459
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	5 cut(s)	117, 166, 194, 202, 497
Bsp1286I	GDGCHC	2 cut(s)	276, 614
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	174, 261
BspANI	GGCC	7 cut(s)	5, 38, 50, 207, 315, 417, 459
BspCNI	CTCAG	2 cut(s)	44, 364
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	3 cut(s)	348, 569, 596
BspLI	GGNNCC	7 cut(s)	122, 123, 148, 163, 273, 460, 699
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	182, 256
BspTNI	GGTCTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	2 cut(s)	316, 865
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	4 cut(s)	106, 265, 418, 607
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	117, 165, 202
BssMI	GATC	2 cut(s)	174, 261
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	70, 638
BstC8I	GCNNGC	2 cut(s)	428, 594
BstDEI	CTNAG	2 cut(s)	31, 351
BstF5I	GGATG	2 cut(s)	363, 793
BstFNI	CGCG	3 cut(s)	348, 569, 596
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	4 cut(s)	350, 571, 598, 715
BstKTI	GATC	2 cut(s)	177, 264
BstMAI	GTCTC	3 cut(s)	68, 301, 384
BstMBI	GATC	2 cut(s)	174, 261
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	5 cut(s)	116, 117, 201, 202, 333
BstSLI	GKGCMC	1 cut(s)	614
BstUI	CGCG	3 cut(s)	348, 569, 596
BstV1I	GCAGC	1 cut(s)	807
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	7 cut(s)	5, 38, 50, 207, 315, 417, 459
BtrI	CACGTC	2 cut(s)	142, 484
BtsCI	GGATG	2 cut(s)	363, 793
BtsIMutI	CAGTG	2 cut(s)	614, 643
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	428, 594
CfoI	GCGC	4 cut(s)	350, 571, 598, 715
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	6 cut(s)	4, 121, 162, 205, 458, 698
Cfr9I	CCCGGG	2 cut(s)	117, 202
Csp6I	GTAC	2 cut(s)	157, 601
CviAII	CATG	1 cut(s)	694
CviQI	GTAC	2 cut(s)	157, 601
DdeI	CTNAG	2 cut(s)	31, 351
DpnI	GATC	2 cut(s)	176, 263
DpnII	GATC	2 cut(s)	174, 261
EaeI	YGGCCR	3 cut(s)	48, 313, 415
EciI	GGCGGA	4 cut(s)	91, 289, 332, 422
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	3 cut(s)	121, 162, 698
Eco88I	CYCGRG	5 cut(s)	117, 166, 194, 202, 497
EcoO109I	RGGNCCY	2 cut(s)	121, 162
EcoRII	CCWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	2 cut(s)	301, 384
FaeI	CATG	1 cut(s)	697
FaiI	YATR	6 cut(s)	632, 666, 668, 684, 695, 750
FaqI	GGGAC	4 cut(s)	73, 94, 107, 563
FatI	CATG	1 cut(s)	693
FauI	CCCGC	3 cut(s)	435, 455, 737
FokI	GGATG	2 cut(s)	350, 800
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	816
GlaI	GCGC	4 cut(s)	349, 570, 597, 714
GsuI	CTGGAG	1 cut(s)	593
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	7 cut(s)	5, 38, 50, 207, 315, 417, 459
HapII	CCGG	6 cut(s)	60, 118, 203, 387, 451, 701
HhaI	GCGC	4 cut(s)	350, 571, 598, 715
Hin1II	CATG	1 cut(s)	697
Hin6I	GCGC	4 cut(s)	348, 569, 596, 713
HinP1I	GCGC	4 cut(s)	348, 569, 596, 713
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	6 cut(s)	15, 41, 186, 279, 383, 671
HpaII	CCGG	6 cut(s)	60, 118, 203, 387, 451, 701
HphI	GGTGA	3 cut(s)	58, 241, 364
Hpy166II	GTNNAC	2 cut(s)	190, 229
Hpy188I	TCNGA	7 cut(s)	34, 146, 174, 185, 271, 379, 690
Hpy188III	TCNNGA	4 cut(s)	259, 353, 387, 499
Hpy8I	GTNNAC	2 cut(s)	190, 229
Hpy99I	CGWCG	5 cut(s)	74, 146, 155, 293, 398
HpyAV	CCTTC	1 cut(s)	775
HpyCH4III	ACNGT	2 cut(s)	70, 638
HpyCH4IV	ACGT	3 cut(s)	141, 288, 483
HpyCH4V	TGCA	3 cut(s)	829, 865, 870
HpyF3I	CTNAG	2 cut(s)	31, 351
HpySE526I	ACGT	3 cut(s)	141, 288, 483
Hsp92II	CATG	1 cut(s)	697
HspAI	GCGC	4 cut(s)	348, 569, 596, 713
KflI	GGGWCCC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	174, 261
LmnI	GCTCC	5 cut(s)	84, 146, 271, 435, 805
Lsp1109I	GCAGC	1 cut(s)	807
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	1 cut(s)	816
MaeII	ACGT	3 cut(s)	141, 288, 483
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	176, 263
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	2 cut(s)	174, 261
MboII	GAAGA	5 cut(s)	169, 172, 322, 476, 658
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	2 cut(s)	276, 614
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	134, 326, 851
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	4 cut(s)	50, 195, 273, 680
MmeI	TCCRAC	3 cut(s)	124, 152, 249
Mox20I	TGGCCA	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	560, 798
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	735
MspI	CCGG	6 cut(s)	60, 118, 203, 387, 451, 701
MspR9I	CCNGG	5 cut(s)	118, 119, 203, 204, 335
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	3 cut(s)	348, 569, 596
NciI	CCSGG	4 cut(s)	118, 119, 203, 204
NdeII	GATC	2 cut(s)	174, 261
NlaIII	CATG	1 cut(s)	697
NlaIV	GGNNCC	7 cut(s)	122, 123, 148, 163, 273, 460, 699
NmeAIII	GCCGAG	3 cut(s)	64, 259, 453
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	2 cut(s)	194, 497
PcsI	WCGNNNNNNNCGW	4 cut(s)	147, 399, 480, 596
PfeI	GAWTC	2 cut(s)	15, 383
PflFI	GACNNNGTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	571
PfoI	TCCNGGA	1 cut(s)	333
PleI	GAGTC	4 cut(s)	49, 194, 273, 679
PpsI	GAGTC	4 cut(s)	49, 194, 273, 679
PpuMI	RGGWCCY	2 cut(s)	121, 162
PshBI	ATTAAT	1 cut(s)	560
Psp5II	RGGWCCY	2 cut(s)	121, 162
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	7 cut(s)	122, 123, 148, 163, 273, 460, 699
PspPI	GGNCC	6 cut(s)	4, 121, 162, 205, 458, 698
PspPPI	RGGWCCY	2 cut(s)	121, 162
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	158, 602
RsaNI	GTAC	2 cut(s)	157, 601
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	560, 798
Sau3AI	GATC	2 cut(s)	174, 261
Sau96I	GGNCC	6 cut(s)	4, 121, 162, 205, 458, 698
SchI	GAGTC	4 cut(s)	50, 195, 273, 680
ScrFI	CCNGG	5 cut(s)	118, 119, 203, 204, 335
SduI	GDGCHC	2 cut(s)	276, 614
SfaNI	GCATC	1 cut(s)	778
Sfr274I	CTCGAG	2 cut(s)	194, 497
SinI	GGWCC	3 cut(s)	121, 162, 698
SlaI	CTCGAG	2 cut(s)	194, 497
SmaI	CCCGGG	2 cut(s)	119, 204
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	194, 497
SmoI	CTYRAG	2 cut(s)	194, 497
Sse9I	AATT	3 cut(s)	134, 326, 851
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	5 cut(s)	116, 117, 201, 202, 333
TaaI	ACNGT	2 cut(s)	70, 638
TaiI	ACGT	3 cut(s)	144, 291, 486
TaqI	TCGA	7 cut(s)	24, 44, 195, 260, 282, 498, 849
TasI	AATT	3 cut(s)	134, 326, 851
TfiI	GAWTC	2 cut(s)	15, 383
Tru1I	TTAA	2 cut(s)	560, 798
Tru9I	TTAA	2 cut(s)	560, 798
TscAI	CASTG	2 cut(s)	614, 643
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	396, 514
TspGWI	ACGGA	1 cut(s)	214
TspMI	CCCGGG	2 cut(s)	117, 202
TspRI	CASTG	2 cut(s)	614, 643
Tth111I	GACNNNGTC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	571
VpaK11BI	GGWCC	3 cut(s)	121, 162, 698
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	2 cut(s)	134, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XhoI	CTCGAG	2 cut(s)	194, 497
XmaI	CCCGGG	2 cut(s)	117, 202
XspI	CTAG	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.