MD15G1205500.v1.1

Cytidine deaminase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
16333984 .. 16334904
921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1205500.v1.1.491

Sequence Viewer

Length: 921 bp
ATGGACCGACCCAGATTCGTAATCGAAGCCTCCGAGGCCGAATCAATGGCCAAGCAGTCCAACCTCACCGTCCTCCAGCTCCTCCCCTCCCTCGTCAAGCCCGCCCAGGCCCTCGCCCGCCCGCCCATCTCCAAATTCCACGTCGGAGCCGTCGGTTACGGTTCATCGGGTCGGATCTTCCTCGGCGTCAACCTCGAGTTCCCGGGTCTCCCCCTCCACTACTCGGTCCACGCCGAGCAGTTCCTCGTCACCAACCTCTCAATCCAATCGGAATCAAAGCTCCAATATATCGCCGTCTCCGCCGCCCCCTGTGGCCATTGCCGCCAGTTCTTCCAAGAAATCCGCGGAGCCCAGGATATCCAGATCCTAATTACCTCGGTGGAATCCGGCGACGACAACTCCGGGTTAAACGGTTTCGACCCGCTTCTCCATTTACTCCCCCACCGATTCGGACCCGAAGACCTCCTGGGACAGGACGTGCCGTTGCTCTTAGAGCAGCACGAAAACGGCCTGTCGTTTTTTAGCGAAACCCAGAATTTAACCGGCGATTTTAAACTTAATGCGGAGTTAAAAGCCGCGGCTTTAGAGGCCGCGAATAAGTCACACGCGCCGTACAGCGGGTGCCCGTCGGGTGTGGCGATTTTGGACTCCGACGGGAAAATGTACAAAGGGTCGTACATGGAGTCCGCCGCCTATAATCCGAGCATGGGCCCGGCTCAGGCGGCGCTGGTGGCTTACATTGTCGGCGGTGGTGGCGGGTATGAGAAAATTGTGGTCGCGGTTTTGGTGGAAAAAGCTGACGTCTTGGTTAAGCAAGAGCACACGGCGAGGTTGCTATTTCAGGCAATCTCGCCCAAGATCGATTTTCGGGTTTTTCACTGCGATTCGGGTTCAAATTGTGTAAAAAGTCTTGATCTTTGA

Protein Analysis

307

Amino Acids

32.94

Weight (kDa)

5.55

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dCMP_cyt_deam_1 PF00383 31 - 115 3.3e-12 Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2 PF08211 143 - 277 1.2e-47 Cytidine and deoxycytidylate deaminase zinc-binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19570
fragaria_vesca FvH4_1g07230
malus_domestica MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica Prupe.7G211600_v2.0.a1
pyrus_communis pycom02g06120 pycom15g18230
rosa_chinensis RchiOBHm_Chr2g0093131
rosa_laevigata RLG00000016371
rosa_multiflora Rmu_sc0003724.1_g000003
rosa_roxburghii Rroxscaffold_2G00148480
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana Rw2G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 804
AccB1I GGYRCC 1 cut(s) 621
AccII CGCG 5 cut(s) 345, 578, 593, 608, 779
AclWI GGATC 2 cut(s) 182, 358
AcoI YGGCCR 2 cut(s) 48, 313
AcsI RAATTY 2 cut(s) 134, 535
AcyI GRCGYC 2 cut(s) 186, 801
AfaI GTAC 3 cut(s) 614, 665, 677
AfiI CCNNNNNNNGG 5 cut(s) 223, 472, 617, 707, 718
AgsI TTSAA 1 cut(s) 894
AjiI CACGTC 2 cut(s) 142, 478
AjnI CCWGG 3 cut(s) 105, 351, 465
AluBI AGCT 3 cut(s) 79, 280, 797
AluI AGCT 3 cut(s) 79, 280, 797
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 2 cut(s) 212, 301
AlwI GGATC 2 cut(s) 182, 358
Ama87I CYCGRG 2 cut(s) 194, 202
AoxI GGCC 7 cut(s) 36, 48, 108, 313, 508, 588, 709
ApaI GGGCCC 1 cut(s) 713
ApeKI GCWGC 1 cut(s) 496
ApoI RAATTY 2 cut(s) 134, 535
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspLEI GCGC 2 cut(s) 610, 727
AspS9I GGNCC 6 cut(s) 4, 109, 226, 452, 709, 710
AsuC2I CCSGG 4 cut(s) 203, 204, 403, 713
AsuHPI GGTGA 2 cut(s) 58, 241
AvaI CYCGRG 2 cut(s) 194, 202
AvaII GGWCC 3 cut(s) 4, 226, 452
BaeGI GKGCMC 2 cut(s) 626, 713
BalI TGGCCA 2 cut(s) 50, 315
BanI GGYRCC 1 cut(s) 621
BanII GRGCYC 2 cut(s) 352, 713
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 134
BceAI ACGGC 6 cut(s) 134, 278, 466, 523, 595, 840
BciT130I CCWGG 3 cut(s) 107, 353, 467
BcnI CCSGG 4 cut(s) 203, 204, 403, 713
BcoDI GTCTC 2 cut(s) 212, 301
BfoI RGCGCY 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 8 cut(s) 303, 322, 497, 576, 579, 591, 690, 723
BlsI GCNGC 8 cut(s) 304, 323, 498, 577, 580, 592, 691, 724
Bme1390I CCNGG 7 cut(s) 107, 203, 204, 353, 403, 467, 713
Bme18I GGWCC 3 cut(s) 4, 226, 452
BmeT110I CYCGRG 2 cut(s) 194, 202
BmgBI CACGTC 2 cut(s) 142, 478
BmgT120I GGNCC 6 cut(s) 4, 109, 226, 452, 709, 710
BmiI GGNNCC 5 cut(s) 148, 349, 454, 623, 711
BmrFI CCNGG 7 cut(s) 107, 203, 204, 353, 403, 467, 713
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 717
BpuMI CCSGG 4 cut(s) 203, 204, 403, 713
Bsa29I ATCGAT 1 cut(s) 861
BsaHI GRCGYC 2 cut(s) 186, 801
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 9 cut(s) 33, 105, 181, 202, 343, 351, 375, 466, 576
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 472, 617, 707, 718
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 3 cut(s) 107, 353, 467
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 9 cut(s) 33, 105, 181, 202, 343, 351, 375, 466, 576
BseLI CCNNNNNNNGG 5 cut(s) 223, 472, 617, 707, 718
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 2 cut(s) 626, 713
BseXI GCAGC 1 cut(s) 508
Bsh1236I CGCG 5 cut(s) 345, 578, 593, 608, 779
BshFI GGCC 7 cut(s) 38, 50, 110, 315, 510, 590, 711
BshNI GGYRCC 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 2 cut(s) 194, 202
BsiSI CCGG 5 cut(s) 203, 387, 402, 543, 713
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 5 cut(s) 223, 472, 617, 707, 718
BsmAI GTCTC 2 cut(s) 212, 301
BsmBI CGTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 7 cut(s) 38, 50, 110, 315, 510, 590, 711
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 2 cut(s) 194, 202
Bsp120I GGGCCC 1 cut(s) 709
Bsp1286I GDGCHC 4 cut(s) 352, 626, 713, 822
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 4 cut(s) 174, 363, 858, 913
BspANI GGCC 7 cut(s) 38, 50, 110, 315, 510, 590, 711
BspCNI CTCAG 1 cut(s) 730
BspDI ATCGAT 1 cut(s) 861
BspFNI CGCG 5 cut(s) 345, 578, 593, 608, 779
BspLI GGNNCC 5 cut(s) 148, 349, 454, 623, 711
BspPI GGATC 2 cut(s) 182, 358
BspT107I GGYRCC 1 cut(s) 621
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 9 cut(s) 33, 105, 181, 202, 343, 351, 375, 466, 576
BssMI GATC 4 cut(s) 174, 363, 858, 913
BssNI GRCGYC 2 cut(s) 186, 801
Bst2UI CCWGG 3 cut(s) 107, 353, 467
Bst4CI ACNGT 3 cut(s) 70, 161, 413
BstACI GRCGYC 2 cut(s) 186, 801
BstAUI TGTACA 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 102, 118, 122
BstDEI CTNAG 2 cut(s) 490, 717
BstDSI CCRYGG 2 cut(s) 343, 576
BstENI CCTNNNNNAGG 1 cut(s) 470
BstFNI CGCG 5 cut(s) 345, 578, 593, 608, 779
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 610, 727
BstKTI GATC 4 cut(s) 177, 366, 861, 916
BstMAI GTCTC 2 cut(s) 212, 301
BstMBI GATC 4 cut(s) 174, 363, 858, 913
BstMWI GCNNNNNNNGC 8 cut(s) 35, 299, 321, 493, 587, 722, 731, 753
BstNI CCWGG 3 cut(s) 107, 353, 467
BstSCI CCNGG 7 cut(s) 105, 201, 202, 351, 401, 465, 711
BstSLI GKGCMC 2 cut(s) 626, 713
BstUI CGCG 5 cut(s) 345, 578, 593, 608, 779
BstV1I GCAGC 1 cut(s) 508
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 174, 363
BstYI RGATCY 2 cut(s) 174, 363
Bsu15I ATCGAT 1 cut(s) 861
BsuRI GGCC 7 cut(s) 38, 50, 110, 315, 510, 590, 711
BsuTUI ATCGAT 1 cut(s) 861
BtgI CCRYGG 2 cut(s) 343, 576
BtrI CACGTC 2 cut(s) 142, 478
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 1 cut(s) 877
Cac8I GCNNGC 3 cut(s) 102, 118, 122
CfoI GCGC 2 cut(s) 610, 727
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 6 cut(s) 4, 109, 226, 452, 709, 710
Cfr42I CCGCGG 2 cut(s) 346, 579
Cfr9I CCCGGG 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 861
CseI GACGC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 613, 664, 676
CviAII CATG 2 cut(s) 679, 706
CviQI GTAC 3 cut(s) 613, 664, 676
DdeI CTNAG 2 cut(s) 490, 717
DpnI GATC 4 cut(s) 176, 365, 860, 915
DpnII GATC 4 cut(s) 174, 363, 858, 913
DraI TTTAAA 1 cut(s) 553
EaeI YGGCCR 2 cut(s) 48, 313
EciI GGCGGA 2 cut(s) 289, 676
Eco24I GRGCYC 2 cut(s) 352, 713
Eco31I GGTCTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 3 cut(s) 4, 226, 452
Eco88I CYCGRG 2 cut(s) 194, 202
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 105, 351, 465
EcoRV GATATC 1 cut(s) 358
EcoT38I GRGCYC 2 cut(s) 352, 713
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 2 cut(s) 682, 709
FaiI YATR 5 cut(s) 288, 680, 696, 707, 762
FaqI GGGAC 1 cut(s) 483
FatI CATG 2 cut(s) 678, 705
FauI CCCGC 6 cut(s) 109, 125, 129, 429, 611, 749
Fnu4HI GCNGC 8 cut(s) 303, 322, 497, 576, 579, 591, 690, 723
FriOI GRGCYC 2 cut(s) 352, 713
Fsp4HI GCNGC 8 cut(s) 303, 322, 497, 576, 579, 591, 690, 723
GlaI GCGC 2 cut(s) 609, 726
GluI GCNGC 8 cut(s) 303, 322, 497, 576, 579, 591, 690, 723
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 7 cut(s) 38, 50, 110, 315, 510, 590, 711
HapII CCGG 5 cut(s) 203, 387, 402, 543, 713
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 610, 727
Hin1I GRCGYC 2 cut(s) 186, 801
Hin1II CATG 2 cut(s) 682, 709
Hin6I GCGC 2 cut(s) 608, 725
HinP1I GCGC 2 cut(s) 608, 725
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 8 cut(s) 15, 41, 272, 383, 447, 647, 683, 884
HpaII CCGG 5 cut(s) 203, 387, 402, 543, 713
HphI GGTGA 2 cut(s) 58, 241
Hpy166II GTNNAC 2 cut(s) 190, 229
Hpy188I TCNGA 7 cut(s) 34, 146, 174, 271, 452, 652, 702
Hpy188III TCNNGA 2 cut(s) 361, 911
Hpy8I GTNNAC 2 cut(s) 190, 229
Hpy99I CGWCG 5 cut(s) 146, 155, 395, 631, 656
HpyCH4III ACNGT 3 cut(s) 70, 161, 413
HpyCH4IV ACGT 3 cut(s) 141, 477, 801
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 299, 321, 493, 587, 722, 731, 753
HpyF3I CTNAG 2 cut(s) 490, 717
HpySE526I ACGT 3 cut(s) 141, 477, 801
Hsp92I GRCGYC 2 cut(s) 186, 801
Hsp92II CATG 2 cut(s) 682, 709
HspAI GCGC 2 cut(s) 608, 725
KspI CCGCGG 2 cut(s) 346, 579
Kzo9I GATC 4 cut(s) 174, 363, 858, 913
LmnI GCTCC 4 cut(s) 84, 146, 285, 347
Lsp1109I GCAGC 1 cut(s) 508
MaeII ACGT 3 cut(s) 141, 477, 801
MaeIII GTNAC 3 cut(s) 155, 247, 600
MalI GATC 4 cut(s) 176, 365, 860, 915
MboI GATC 4 cut(s) 174, 363, 858, 913
MboII GAAGA 3 cut(s) 169, 322, 470
MflI RGATCY 2 cut(s) 174, 363
MhlI GDGCHC 4 cut(s) 352, 626, 713, 822
MlsI TGGCCA 2 cut(s) 50, 315
MluCI AATT 5 cut(s) 134, 369, 535, 768, 895
MluNI TGGCCA 2 cut(s) 50, 315
MlyI GAGTC 2 cut(s) 641, 692
MmeI TCCRAC 4 cut(s) 84, 124, 152, 675
Mox20I TGGCCA 2 cut(s) 50, 315
MscI TGGCCA 2 cut(s) 50, 315
MseI TTAA 6 cut(s) 407, 539, 552, 558, 569, 810
Msp20I TGGCCA 2 cut(s) 50, 315
MspA1I CMGCKG 3 cut(s) 345, 578, 618
MspI CCGG 5 cut(s) 203, 387, 402, 543, 713
MspR9I CCNGG 7 cut(s) 107, 203, 204, 353, 403, 467, 713
MvaI CCWGG 3 cut(s) 107, 353, 467
MvnI CGCG 5 cut(s) 345, 578, 593, 608, 779
MwoI GCNNNNNNNGC 8 cut(s) 35, 299, 321, 493, 587, 722, 731, 753
NciI CCSGG 4 cut(s) 203, 204, 403, 713
NdeII GATC 4 cut(s) 174, 363, 858, 913
NlaIII CATG 2 cut(s) 682, 709
NlaIV GGNNCC 5 cut(s) 148, 349, 454, 623, 711
NmeAIII GCCGAG 2 cut(s) 162, 259
NmuCI GTSAC 2 cut(s) 247, 600
PaeR7I CTCGAG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 147, 635
PfeI GAWTC 6 cut(s) 15, 41, 272, 383, 447, 884
PkrI GCNGC 8 cut(s) 304, 323, 498, 577, 580, 592, 691, 724
PleI GAGTC 2 cut(s) 641, 691
PpsI GAGTC 2 cut(s) 641, 691
Psp6I CCWGG 3 cut(s) 105, 351, 465
PspGI CCWGG 3 cut(s) 105, 351, 465
PspN4I GGNNCC 5 cut(s) 148, 349, 454, 623, 711
PspOMI GGGCCC 1 cut(s) 709
PspPI GGNCC 6 cut(s) 4, 109, 226, 452, 709, 710
PspXI VCTCGAGB 1 cut(s) 194
PsuI RGATCY 2 cut(s) 174, 363
RsaI GTAC 3 cut(s) 614, 665, 677
RsaNI GTAC 3 cut(s) 613, 664, 676
SacII CCGCGG 2 cut(s) 346, 579
SaqAI TTAA 6 cut(s) 407, 539, 552, 558, 569, 810
SatI GCNGC 8 cut(s) 303, 322, 497, 576, 579, 591, 690, 723
Sau3AI GATC 4 cut(s) 174, 363, 858, 913
Sau96I GGNCC 6 cut(s) 4, 109, 226, 452, 709, 710
SchI GAGTC 2 cut(s) 641, 692
ScrFI CCNGG 7 cut(s) 107, 203, 204, 353, 403, 467, 713
SduI GDGCHC 4 cut(s) 352, 626, 713, 822
Sfr274I CTCGAG 1 cut(s) 194
Sfr303I CCGCGG 2 cut(s) 346, 579
SgrBI CCGCGG 2 cut(s) 346, 579
SinI GGWCC 3 cut(s) 4, 226, 452
SlaI CTCGAG 1 cut(s) 194
SmaI CCCGGG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 134, 369, 535, 768, 895
StyD4I CCNGG 7 cut(s) 105, 201, 202, 351, 401, 465, 711
TaaI ACNGT 3 cut(s) 70, 161, 413
TaiI ACGT 3 cut(s) 144, 480, 804
TaqI TCGA 4 cut(s) 24, 195, 417, 861
TaqII GACCGA 2 cut(s) 21, 214
TasI AATT 5 cut(s) 134, 369, 535, 768, 895
TatI WGTACW 1 cut(s) 663
TauI GCSGC 7 cut(s) 305, 324, 578, 581, 593, 692, 725
TfiI GAWTC 6 cut(s) 15, 41, 272, 383, 447, 884
Tru1I TTAA 6 cut(s) 407, 539, 552, 558, 569, 810
Tru9I TTAA 6 cut(s) 407, 539, 552, 558, 569, 810
TscAI CASTG 1 cut(s) 884
TseFI GTSAC 2 cut(s) 247, 600
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 2 cut(s) 247, 600
TspDTI ATGAA 1 cut(s) 153
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 1 cut(s) 884
VpaK11BI GGWCC 3 cut(s) 4, 226, 452
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 2 cut(s) 134, 535
XhoI CTCGAG 1 cut(s) 194
XmaI CCCGGG 1 cut(s) 202
ZraI GACGTC 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.