Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003724.1

Orthogroup ID

OG0014287

Physical Location & Seq

Genomic Coordinates Forward (+)

12971 .. 13858

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003724.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggaccgacccagattcgtaatcgaagcctcgaaggcggagtcagcggccaagcagaagggcctcaccgtcgtccagcacctcccgtccttcgtcgagtcagccaaggacctcgcccgggtccccatctccaaattccccgtcggagcagtcgggtacgggtcctcgggtcgggtcttcttcggggtcaacctcgagttcccgggcctccccctccactactcggtccacgccgagcagttcctcgtcaccaatctctcgatccagtcggagccccgcctcgaatacgtcgccgtctccgccgccccctgcggccattgccgccaattctttcaggaaatccgccgcgcagaggacatcaagatcctcatcacctccgccgaggccggagacgacacgtcgtgcggccaattcagccccctccgccacctcctcccccaccggttcggccccgaagacctcctcgacgaggacgtgcctttagtcctcgagaagcacaacaatggcctatcttttagcaacaaacccgagacttttagcaacaaatcgcctacttttagcgacgatttgataaaccacgcgctggaggcggcgaataggtcgcacgcgccttacagcctttgcccgtctggggtggcgattctggacggtgaggggaagatttacaaagggtggtatatggaatcggcggcgtataatcctagcatgggtccggtccaggcggctctggtggattacattgtcggcggcggcggcgggtataaggaaatagtggcggcggttctggtggaaaaggagggtgctttggtgaagcaggagcaggctgctaggttgctgttgcagaccatttctcccaaggtcgaatttcgggttttgcattgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

295

Amino Acids

32.16

Weight (kDa)

6.07

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19570
fragaria_vesca	FvH4_1g07230
malus_domestica	MD02G1076800.v1.1 MD15G1205500.v1.1
prunus_persica	Prupe.7G211600_v2.0.a1
pyrus_communis	pycom02g06120 pycom15g18230
rosa_chinensis	RchiOBHm_Chr2g0093131
rosa_laevigata	RLG00000016371
rosa_multiflora	Rmu_sc0003724.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148480
rosa_rugosa	Rorug02G0033200
rosa_samantha	Rh2AG078700 Rh2BG080000 Rh2CG082200 Rh2DG077700
rosa_wichuraiana	Rw2G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccII	CGCG	3 cut(s)	348, 581, 608
AclWI	GGATC	2 cut(s)	256, 358
AcoI	YGGCCR	3 cut(s)	48, 313, 406
AcsI	RAATTY	2 cut(s)	134, 863
AdeI	CACNNNGTG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 583, 631, 707
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	441
AhdI	GACNNNNNGTC	1 cut(s)	397
AjiI	CACGTC	2 cut(s)	399, 475
AjnI	CCWGG	1 cut(s)	717
Alw26I	GTCTC	3 cut(s)	301, 384, 524
AlwI	GGATC	2 cut(s)	256, 358
Ama87I	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 527
AoxI	GGCC	8 cut(s)	48, 61, 205, 313, 384, 406, 448, 505
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	2 cut(s)	134, 863
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 126, 158
AsiGI	ACCGGT	1 cut(s)	441
AspLEI	GCGC	3 cut(s)	350, 583, 610
AsuC2I	CCSGG	4 cut(s)	118, 119, 203, 204
AsuHPI	GGTGA	5 cut(s)	58, 241, 364, 662, 820
AvaI	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 527
AvaII	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 710, 715
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	169, 462
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	719
BcnI	CCSGG	4 cut(s)	118, 119, 203, 204
BcoDI	GTCTC	3 cut(s)	301, 384, 524
BfaI	CTAG	2 cut(s)	702, 828
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	5 cut(s)	118, 119, 203, 204, 719
Bme18I	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 710, 715
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 527
BmgBI	CACGTC	2 cut(s)	399, 475
BmiI	GGNNCC	6 cut(s)	122, 123, 163, 273, 451, 711
BmrFI	CCNGG	5 cut(s)	118, 119, 203, 204, 719
BpiI	GAAGAC	2 cut(s)	169, 462
BpmI	CTGGAG	1 cut(s)	605
BpuMI	CCSGG	4 cut(s)	118, 119, 203, 204
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	6 cut(s)	105, 117, 165, 202, 381, 855
BsaWI	WCCGGW	2 cut(s)	441, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bsc4I	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 583, 631, 707
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	316, 877
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	6 cut(s)	105, 117, 165, 202, 381, 855
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 583, 631, 707
BseMI	GCAATG	2 cut(s)	316, 877
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	422, 452
BseXI	GCAGC	1 cut(s)	811
Bsh1236I	CGCG	3 cut(s)	348, 581, 608
BshFI	GGCC	8 cut(s)	50, 63, 207, 315, 386, 408, 450, 507
BshTI	ACCGGT	1 cut(s)	441
BsiHKCI	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 527
BsiSI	CCGG	5 cut(s)	118, 203, 387, 442, 713
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	8 cut(s)	118, 171, 223, 352, 469, 583, 631, 707
BsmAI	GTCTC	3 cut(s)	301, 384, 524
BsmBI	CGTCTC	2 cut(s)	301, 384
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	8 cut(s)	50, 63, 207, 315, 386, 408, 450, 507
BsoBI	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 527
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	261, 363
BspANI	GGCC	8 cut(s)	50, 63, 207, 315, 386, 408, 450, 507
BspFNI	CGCG	3 cut(s)	348, 581, 608
BspLI	GGNNCC	6 cut(s)	122, 123, 163, 273, 451, 711
BspPI	GGATC	2 cut(s)	256, 358
BsrDI	GCAATG	2 cut(s)	316, 877
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	6 cut(s)	105, 117, 165, 202, 381, 855
BssMI	GATC	2 cut(s)	261, 363
BssT1I	CCWWGG	2 cut(s)	105, 855
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	2 cut(s)	70, 650
BstC8I	GCNNGC	2 cut(s)	606, 822
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstFNI	CGCG	3 cut(s)	348, 581, 608
BstHHI	GCGC	3 cut(s)	350, 583, 610
BstKTI	GATC	2 cut(s)	264, 366
BstMAI	GTCTC	3 cut(s)	301, 384, 524
BstMBI	GATC	2 cut(s)	261, 363
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 44, 299, 318, 321, 414, 423, 587, 753
BstNI	CCWGG	1 cut(s)	719
BstSCI	CCNGG	5 cut(s)	116, 117, 201, 202, 717
BstUI	CGCG	3 cut(s)	348, 581, 608
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	2 cut(s)	169, 462
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	8 cut(s)	50, 63, 207, 315, 386, 408, 450, 507
BtrI	CACGTC	2 cut(s)	399, 475
Cac8I	GCNNGC	2 cut(s)	606, 822
CfoI	GCGC	3 cut(s)	350, 583, 610
Cfr10I	RCCGGY	1 cut(s)	441
Cfr9I	CCCGGG	2 cut(s)	117, 202
Csp6I	GTAC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	1 cut(s)	706
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	263, 365
DpnII	GATC	2 cut(s)	261, 363
DraIII	CACNNNGTG	1 cut(s)	402
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	3 cut(s)	48, 313, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EciI	GGCGGA	5 cut(s)	53, 289, 332, 367, 413
Eco130I	CCWWGG	2 cut(s)	105, 855
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 710, 715
Eco88I	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 527
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	4 cut(s)	61, 109, 121, 162
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	2 cut(s)	105, 855
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	105, 855
Esp3I	CGTCTC	2 cut(s)	301, 384
FaeI	CATG	1 cut(s)	709
FaiI	YATR	5 cut(s)	678, 680, 696, 707, 762
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	705
FauI	CCCGC	2 cut(s)	284, 749
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	702, 828
GlaI	GCGC	3 cut(s)	349, 582, 609
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	8 cut(s)	50, 63, 207, 315, 386, 408, 450, 507
HapII	CCGG	5 cut(s)	118, 203, 387, 442, 713
HhaI	GCGC	3 cut(s)	350, 583, 610
Hin1II	CATG	1 cut(s)	709
Hin6I	GCGC	3 cut(s)	348, 581, 608
HinP1I	GCGC	3 cut(s)	348, 581, 608
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	5 cut(s)	15, 41, 98, 640, 683
HpaII	CCGG	5 cut(s)	118, 203, 387, 442, 713
HphI	GGTGA	5 cut(s)	58, 241, 364, 662, 820
Hpy166II	GTNNAC	2 cut(s)	190, 229
Hpy188I	TCNGA	2 cut(s)	146, 271
Hpy188III	TCNNGA	5 cut(s)	259, 335, 361, 490, 644
Hpy8I	GTNNAC	2 cut(s)	190, 229
Hpy99I	CGWCG	7 cut(s)	74, 98, 146, 293, 403, 470, 566
HpyAV	CCTTC	3 cut(s)	28, 52, 100
HpyCH4III	ACNGT	2 cut(s)	70, 650
HpyCH4IV	ACGT	3 cut(s)	288, 398, 474
HpyCH4V	TGCA	3 cut(s)	841, 877, 882
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 44, 299, 318, 321, 414, 423, 587, 753
HpySE526I	ACGT	3 cut(s)	288, 398, 474
Hsp92II	CATG	1 cut(s)	709
HspAI	GCGC	3 cut(s)	348, 581, 608
KflI	GGGWCCC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	261, 363
LmnI	GCTCC	3 cut(s)	146, 271, 817
Lsp1109I	GCAGC	1 cut(s)	811
MaeI	CTAG	2 cut(s)	702, 828
MaeII	ACGT	3 cut(s)	288, 398, 474
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	263, 365
MboI	GATC	2 cut(s)	261, 363
MboII	GAAGA	4 cut(s)	169, 172, 467, 670
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	134, 326, 410, 863
MlyI	GAGTC	2 cut(s)	50, 107
MmeI	TCCRAC	2 cut(s)	124, 249
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	5 cut(s)	118, 203, 387, 442, 713
MspR9I	CCNGG	5 cut(s)	118, 119, 203, 204, 719
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	3 cut(s)	348, 581, 608
MwoI	GCNNNNNNNGC	9 cut(s)	35, 44, 299, 318, 321, 414, 423, 587, 753
NciI	CCSGG	4 cut(s)	118, 119, 203, 204
NdeII	GATC	2 cut(s)	261, 363
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	6 cut(s)	122, 123, 163, 273, 451, 711
NmeAIII	GCCGAG	2 cut(s)	259, 406
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	2 cut(s)	194, 488
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	15, 640, 683
PflMI	CCANNNNNTGG	1 cut(s)	583
PinAI	ACCGGT	1 cut(s)	441
PleI	GAGTC	2 cut(s)	49, 106
PpsI	GAGTC	2 cut(s)	49, 106
PpuMI	RGGWCCY	3 cut(s)	109, 121, 162
Psp5II	RGGWCCY	3 cut(s)	109, 121, 162
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	6 cut(s)	122, 123, 163, 273, 451, 711
PspPPI	RGGWCCY	3 cut(s)	109, 121, 162
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	501
Sau3AI	GATC	2 cut(s)	261, 363
SchI	GAGTC	2 cut(s)	50, 107
ScrFI	CCNGG	5 cut(s)	118, 119, 203, 204, 719
SduI	GDGCHC	1 cut(s)	276
Sfr274I	CTCGAG	2 cut(s)	194, 488
SinI	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 710, 715
SlaI	CTCGAG	2 cut(s)	194, 488
SmaI	CCCGGG	2 cut(s)	119, 204
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	194, 488
SmoI	CTYRAG	2 cut(s)	194, 488
Sse9I	AATT	4 cut(s)	134, 326, 410, 863
SspMI	CTAG	2 cut(s)	702, 828
StyD4I	CCNGG	5 cut(s)	116, 117, 201, 202, 717
StyI	CCWWGG	2 cut(s)	105, 855
TaaI	ACNGT	2 cut(s)	70, 650
TaiI	ACGT	3 cut(s)	291, 401, 477
TaqI	TCGA	9 cut(s)	24, 32, 96, 195, 260, 282, 465, 489, 861
TaqII	GACCGA	2 cut(s)	21, 214
TasI	AATT	4 cut(s)	134, 326, 410, 863
TfiI	GAWTC	3 cut(s)	15, 640, 683
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	247
TspMI	CCCGGG	2 cut(s)	117, 202
Van91I	CCANNNNNTGG	1 cut(s)	583
VpaK11BI	GGWCC	7 cut(s)	4, 109, 121, 162, 226, 710, 715
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	2 cut(s)	134, 863
XhoI	CTCGAG	2 cut(s)	194, 488
XmaI	CCCGGG	2 cut(s)	117, 202
XspI	CTAG	2 cut(s)	702, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.